Ggra5051.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra5051.t1
Unique NameGgra5051.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length245
Homology
BLAST of Ggra5051.t1 vs. uniprot
Match: A0A2V3J6V6 (Splicing factor U2af small subunit B n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J6V6_9FLOR)

HSP 1 Score: 384 bits (986), Expect = 2.720e-131
Identity = 191/246 (77.64%), Postives = 210/246 (85.37%), Query Frame = 0
Query:    1 MAEHLASIYGTEKDKINCPFYFKIGACRHGDRCSRVHHKPLFSPTILLHNLYVSPDQLISLATKQGLPPPIIPQEDIIHHFEDFYYDIYDELVKHGAIDKLYVCENLADHLAGNTYVKFFDEHSAQLALQAVNGRFYAGRVVKAEFSPVTDFREGKCRPFEKDGQCERGDFCHFLHLRRQPRSERDPPPDPYAHRREERPSYR--SSAP-YYDSRRREDRYRTS---WYESGVNNNERERRHSYER 240
            MAEHLASIYGTEKDKINCPFYFKIGACRHGDRCSRVHHKPLFSPT+LLHNLYVSP+QLIS+A KQGLPPP+IPQ+DI +HFEDFY+DIYDEL KHG IDKLYVCENLADHLAGNTYVKF DEH+AQLAL A+NGR+YAGR VKAEFSPVTDFREGKCRPFE+DGQCERGDFCHFLHLRRQP S        Y+ RRE+   YR    AP YYD RRREDRYR+S   +Y++G  + ER+R H   R
Sbjct:    1 MAEHLASIYGTEKDKINCPFYFKIGACRHGDRCSRVHHKPLFSPTLLLHNLYVSPNQLISIAAKQGLPPPVIPQQDIFNHFEDFYWDIYDELAKHGPIDKLYVCENLADHLAGNTYVKFLDEHAAQLALNAINGRYYAGRPVKAEFSPVTDFREGKCRPFERDGQCERGDFCHFLHLRRQPNSAAREDTLHYSARREDVRGYRPRDRAPIYYDGRRREDRYRSSSSAYYDAGKRS-ERDRLHDRRR 245          
BLAST of Ggra5051.t1 vs. uniprot
Match: R7QB72 (Splicing factor U2af small subunit B n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QB72_CHOCR)

HSP 1 Score: 311 bits (797), Expect = 4.320e-104
Identity = 151/228 (66.23%), Postives = 172/228 (75.44%), Query Frame = 0
Query:    1 MAEHLASIYGTEKDKINCPFYFKIGACRHGDRCSRVHHKPLFSPTILLHNLYVSPDQLISLATKQGLPPPIIPQEDIIHHFEDFYYDIYDELVKHGAIDKLYVCENLADHLAGNTYVKFFDEHSAQLALQAVNGRFYAGRVVKAEFSPVTDFREGKCRPFEKDGQCERGDFCHFLHLRRQPRSER----DPPPDPYAHRREERPSYRSSAP---------YYDSRRRE 215
            MAEHL SIYGTEKDK+NCPFY+KIGACRHGDRCSRVH+KPLFS T+LLHNLY SPDQ+I+ A  Q LPPP IP +D+ HHF+DFY D+  E++KHG +D+L VCENLADHLAGNTYVKF DE SAQ AL A++GR+YAGR V  EFSPVTDFREGKCRPFE+ GQCERGD+CHF+HLRR P   R    DP PD   +    R  YR   P          YD RR E
Sbjct:    1 MAEHLVSIYGTEKDKVNCPFYYKIGACRHGDRCSRVHNKPLFSQTLLLHNLYQSPDQIIASAAAQSLPPPDIPPDDLRHHFDDFYADVLHEMLKHGPVDELRVCENLADHLAGNTYVKFADEESAQNALNALHGRWYAGRPVLVEFSPVTDFREGKCRPFERYGQCERGDYCHFMHLRRHPGGTRPDDHDPRPDRLRYPHSSRDKYRDYPPRDSRDYPRYQYDDRRSE 228          
BLAST of Ggra5051.t1 vs. uniprot
Match: M2XVE9 (Splicing factor U2AF 35 kDa subunit n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XVE9_GALSU)

HSP 1 Score: 267 bits (682), Expect = 1.960e-86
Identity = 116/179 (64.80%), Postives = 153/179 (85.47%), Query Frame = 0
Query:    1 MAEHLASIYGTEKDKINCPFYFKIGACRHGDRCSRVHHKPLFSPTILLHNLYVSPDQLISLATKQGLPPPIIPQEDIIHHFEDFYYDIYDELVKHGAIDKLYVCENLADHLAGNTYVKFFDEHSAQLALQAVNGRFYAGRVVKAEFSPVTDFREGKCRPFEKDGQCERGDFCHFLHLRR 179
            MAEHLASI+GTEKD++NCPFYFKIGACRHG+RCSR+H+KP+FS TILL N+Y+S DQ+ + A   G  PP + +EDI +HF+DFY D+YDEL K+G I++++VCEN+++HL GN Y+KF DE +AQ ALQAVNGR+YAGR+V AEFSPVTDFRE +CRP+E+   C+RGD+C+F+H++R
Sbjct:    1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGERCSRLHNKPVFSQTILLKNMYLSVDQIAAAAIAVGAKPPEMSEEDIKYHFDDFYEDVYDELSKYGEIEEMHVCENMSEHLTGNVYIKFKDEDAAQRALQAVNGRYYAGRMVHAEFSPVTDFREARCRPYERQ-LCDRGDYCNFMHIKR 178          
BLAST of Ggra5051.t1 vs. uniprot
Match: A0A7S2ZY96 (Hypothetical protein (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZY96_9RHOD)

HSP 1 Score: 257 bits (657), Expect = 3.610e-83
Identity = 112/179 (62.57%), Postives = 148/179 (82.68%), Query Frame = 0
Query:    1 MAEHLASIYGTEKDKINCPFYFKIGACRHGDRCSRVHHKPLFSPTILLHNLYVSPDQLISLATKQGLPPPIIPQEDIIHHFEDFYYDIYDELVKHGAIDKLYVCENLADHLAGNTYVKFFDEHSAQLALQAVNGRFYAGRVVKAEFSPVTDFREGKCRPFEKDGQCERGDFCHFLHLRR 179
            MAEHLASI+GTEKD++NCPFYFKIGACRHG+RCSR+H+KPLFS T+LL N+Y+SP+Q+ + A   G   P + +E   +HFEDFY D+++EL KHG ++++++CENL+DHLAGN YVKF DE  AQ AL AV GR YAGR++K E+SPVT+FRE +CRP+EK   C+RGD+C+F+H+RR
Sbjct:    1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGERCSRMHNKPLFSQTLLLENMYLSPEQIGAAAAAAGKEFPKLSEEAEKYHFEDFYEDVFEELAKHGEVEEMHICENLSDHLAGNAYVKFRDEEGAQAALNAVKGRHYAGRLLKVEYSPVTEFREARCRPYEKK-LCDRGDYCNFMHIRR 178          
BLAST of Ggra5051.t1 vs. uniprot
Match: A0A7S1XED7 (Hypothetical protein (Fragment) n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1XED7_9RHOD)

HSP 1 Score: 246 bits (628), Expect = 2.300e-78
Identity = 107/181 (59.12%), Postives = 140/181 (77.35%), Query Frame = 0
Query:    1 MAEHLASIYGTEKDKINCPFYFKIGACRHGDRCSRVHHKPLFSPTILLHNLYVSPDQLISLATKQGLPPPIIPQEDIIHHFEDFYYDIYDELVKHGAIDKLYVCENLADHLAGNTYVKFFDEHSAQLALQAVNGRFYAGRVVKAEFSPVTDFREGKCRPFEKDGQCERGDFCHFLHLRRQP 181
            MAEHLA+I+GTEKD++NCPFYFKIGACRHG+RCSR+H+KP+FS T+L  N Y+SP+ +   A   G  PP   +E    HFE F+ D++ EL +HG I++ +VC+NL+DHL GN YVKF DE  AQ AL+ V+GR+Y GR VK E+SPVTDFRE +CRP E+ G C+RGD+C+F+H+RR P
Sbjct:    1 MAEHLAAIHGTEKDRVNCPFYFKIGACRHGERCSRMHNKPIFSQTLLFENFYLSPEAIAQAAVSAGQHPPKFSEEGAREHFEFFFEDVFSELAEHGEIEEFHVCQNLSDHLNGNVYVKFADEEGAQEALKKVSGRYYCGRPVKVEYSPVTDFREARCRPHER-GTCDRGDYCNFMHIRRLP 180          
BLAST of Ggra5051.t1 vs. uniprot
Match: A0A1X6NKM9 (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NKM9_PORUM)

HSP 1 Score: 240 bits (612), Expect = 5.210e-75
Identity = 106/180 (58.89%), Postives = 145/180 (80.56%), Query Frame = 0
Query:    1 MAEHLAS---IYGTEKDKINCPFYFKIGACRHGDRCSRVHHKPLFSPTILLHNLYVSPDQLISLATKQGLPPPIIPQEDIIHHFEDFYYDIYDELVKHGAIDKLYVCENLADHLAGNTYVKFFDEHSAQLALQAVNGRFYAGRVVKAEFSPVTDFREGKCRPFEKDGQCERGDFCHFLHL 177
            MA+HLA+   ++GTE+D++NCPFY+K+GACRHG+RCSR+H+KPL S T+LL N+Y SP Q+ + A   GLPPP IP+ +   +F++FY D++ E+ K+G +D+L+VCENL+DHLAGNTYVKF +E SA  AL A+  R+YAGR VKA+ SPVT FRE +CRP+EKD  C+RGD+C+F+HL
Sbjct:    1 MAKHLANLVAVHGTERDRVNCPFYYKMGACRHGERCSRLHNKPLSSTTLLLTNMYYSPAQIRATAAAAGLPPPTIPKAEETTYFDNFYVDVWREMAKYGRVDELHVCENLSDHLAGNTYVKFAEEDSAAAALAALESRWYAGRPVKADLSPVTHFREARCRPYEKDA-CDRGDYCNFMHL 179          
BLAST of Ggra5051.t1 vs. uniprot
Match: A0A022RAZ2 (Uncharacterized protein n=1 Tax=Erythranthe guttata TaxID=4155 RepID=A0A022RAZ2_ERYGU)

HSP 1 Score: 234 bits (598), Expect = 1.790e-73
Identity = 107/179 (59.78%), Postives = 135/179 (75.42%), Query Frame = 0
Query:    1 MAEHLASIYGTEKDKINCPFYFKIGACRHGDRCSRVHHKPLFSPTILLHNLYVSPDQLISLATKQGLPPPIIPQEDIIHHFEDFYYDIYDELVKHGAIDKLYVCENLADHLAGNTYVKFFDEHSAQLALQAVNGRFYAGRVVKAEFSPVTDFREGKCRPFEKDGQCERGDFCHFLHLRR 179
            MAEHLASI+GTEKD++NCPFYFKIGACRHGDRCSR+H KP  SPT+LL N+Y  PD +      QGLP   I  + +  HFEDFY D+++EL KHG I+ L +C+NLADH+ GN YV+F +E  A  AL+A+ GRFYAGR +  +FSPVTDFRE  CR +E+D  C RG +C+F+HL+R
Sbjct:    1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDSITPGVDAQGLP---IDPKKMQEHFEDFYEDLFEELNKHGEIESLNICDNLADHMVGNVYVQFREEEHASKALKALTGRFYAGRPIIVDFSPVTDFREATCRQYEEDA-CNRGGYCNFMHLKR 175          
BLAST of Ggra5051.t1 vs. uniprot
Match: A0A453L511 (Uncharacterized protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453L511_AEGTS)

HSP 1 Score: 231 bits (590), Expect = 2.160e-73
Identity = 110/179 (61.45%), Postives = 135/179 (75.42%), Query Frame = 0
Query:    1 MAEHLASIYGTEKDKINCPFYFKIGACRHGDRCSRVHHKPLFSPTILLHNLYVSPDQLISLATKQGLP-PPIIPQEDIIHHFEDFYYDIYDELVKHGAIDKLYVCENLADHLAGNTYVKFFDEHSAQLALQAVNGRFYAGRVVKAEFSPVTDFREGKCRPFEKDGQCERGDFCHFLHLR 178
            MAEHLASI+GTEKD++NCPFYFKIGACRHGDRCSR+H+KP  SPT+LL N+Y  PD +      QG P  P+  Q D    FEDFY DI+DEL KHG ++ L+VC+NLADHL GN YV+F +E  A  ALQA+ GRFY+GR + AEFSPVTDFRE  CR FE+   C RG +C+F+H++
Sbjct:    1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNKPSVSPTLLLCNMYQRPDMITPGVDAQGNPIDPVKIQGD----FEDFYEDIFDELSKHGEVENLHVCDNLADHLIGNVYVQFREEDQAAKALQALQGRFYSGRPIIAEFSPVTDFREATCRQFEEHN-CNRGGYCNFMHVK 174          
BLAST of Ggra5051.t1 vs. uniprot
Match: splicing factor U2af small subunit B-like n=2 Tax=Telopea speciosissima TaxID=54955 RepID=UPI001CC5DB78 (splicing factor U2af small subunit B-like n=2 Tax=Telopea speciosissima TaxID=54955 RepID=UPI001CC5DB78)

HSP 1 Score: 233 bits (594), Expect = 3.020e-73
Identity = 122/235 (51.91%), Postives = 157/235 (66.81%), Query Frame = 0
Query:    1 MAEHLASIYGTEKDKINCPFYFKIGACRHGDRCSRVHHKPLFSPTILLHNLYVSPDQLISLATKQGLPPPIIPQEDIIHHFEDFYYDIYDELVKHGAIDKLYVCENLADHLAGNTYVKFFDEHSAQLALQAVNGRFYAGRVVKAEFSPVTDFREGKCRPFEKDGQCERGDFCHFLHLRRQPRSERDPPPDPYAHRREERPSYRSSAPYYDSRRREDR---YRTSWYESGVNNNER 232
            MAEHLASI+GTEKD++NCPFYFKIGACRHGDRCSR+H+KP  SPT+LL N+Y  PD +      QG P   I    I  HFEDFY DI++EL K G I+ L +C+NLADH+ GN YV+F +E  A  AL+A+ GRFY+GR +  +FSPVTDFRE  CR FE++  C RG +C+F+H+++  R  R      Y   R  R   RS +PY+  RR  DR   YR   Y +G ++ +R
Sbjct:    1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNKPTISPTLLLSNMYQRPDMITPGVDPQGQP---IDPRKIQEHFEDFYEDIFEELNKFGEIESLNICDNLADHMVGNVYVQFKEEDQAAAALRALQGRFYSGRPIIVDFSPVTDFREATCRQFEENS-CNRGGYCNFMHVKQISRDLRRKLYGRYRRSRGSRSRSRSLSPYH--RRESDRHGDYRDRDYRNGRHSGDR 229          
BLAST of Ggra5051.t1 vs. uniprot
Match: A0A1D1Z0R2 (Splicing factor U2af small subunit A n=3 Tax=Araceae TaxID=4454 RepID=A0A1D1Z0R2_9ARAE)

HSP 1 Score: 231 bits (589), Expect = 1.470e-72
Identity = 116/228 (50.88%), Postives = 154/228 (67.54%), Query Frame = 0
Query:    1 MAEHLASIYGTEKDKINCPFYFKIGACRHGDRCSRVHHKPLFSPTILLHNLYVSPDQLISLATKQGLPPPIIPQEDIIHHFEDFYYDIYDELVKHGAIDKLYVCENLADHLAGNTYVKFFDEHSAQLALQAVNGRFYAGRVVKAEFSPVTDFREGKCRPFEKDGQCERGDFCHFLHLRR--------------QPRSERDPPPDPYAHRREERPSYRSSAPYYDSRRR 214
            MAEHLASI+GTEKD++NCPFYFKIGACRHGDRCSR+H++P  SPT+LL N+Y  PD +      QG P   I    I  HFEDFY DI++EL+K G I+ L +C+NLADH+ GN YV+F +E  A+ AL+A+ GRFY+GR + A+FSPVTDFRE  CR +E++  C RG +C+F+H+++              + R  R   P P+ HRRE+   +R    + DS RR
Sbjct:    1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQP---IDPRKIQEHFEDFYEDIFEELIKFGEIESLNICDNLADHMVGNVYVQFKEEEQAEAALRALQGRFYSGRPIIADFSPVTDFREATCRQYEENS-CNRGGYCNFMHVKQIGRELRRKLFGRYHRSRGGRSRSPSPH-HRREQ---HRGRGDFRDSGRR 220          
The following BLAST results are available for this feature:
BLAST of Ggra5051.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J6V62.720e-13177.64Splicing factor U2af small subunit B n=1 Tax=Graci... [more]
R7QB724.320e-10466.23Splicing factor U2af small subunit B n=1 Tax=Chond... [more]
M2XVE91.960e-8664.80Splicing factor U2AF 35 kDa subunit n=1 Tax=Galdie... [more]
A0A7S2ZY963.610e-8362.57Hypothetical protein (Fragment) n=1 Tax=Rhodosorus... [more]
A0A7S1XED72.300e-7859.12Hypothetical protein (Fragment) n=1 Tax=Compsopogo... [more]
A0A1X6NKM95.210e-7558.89Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A022RAZ21.790e-7359.78Uncharacterized protein n=1 Tax=Erythranthe guttat... [more]
A0A453L5112.160e-7361.45Uncharacterized protein n=1 Tax=Aegilops tauschii ... [more]
splicing factor U2af small subunit B-like n=2 Tax=Telopea speciosissima TaxID=54955 RepID=UPI001CC5DB783.020e-7351.91splicing factor U2af small subunit B-like n=2 Tax=... [more]
A0A1D1Z0R21.470e-7250.88Splicing factor U2af small subunit A n=3 Tax=Arace... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009145U2 auxiliary factor small subunitPRINTSPR01848U2AUXFACTORcoord: 37..57
score: 44.81
coord: 78..93
score: 40.62
coord: 18..37
score: 83.18
coord: 169..181
score: 40.91
coord: 133..157
score: 56.18
coord: 106..128
score: 52.77
IPR009145U2 auxiliary factor small subunitPANTHERPTHR12620U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNITcoord: 1..242
IPR000571Zinc finger, CCCH-typeSMARTSM00356c3hfinal6coord: 153..178
e-value: 0.4
score: 19.4
coord: 13..39
e-value: 0.21
score: 20.7
IPR000571Zinc finger, CCCH-typePFAMPF00642zf-CCCHcoord: 17..38
e-value: 2.7E-6
score: 27.1
coord: 156..177
e-value: 2.0E-4
score: 21.2
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 12..40
score: 12.40826
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 151..179
score: 12.032697
IPR003954RNA recognition motif domain, eukaryoteSMARTSM00361rrm2_1coord: 61..145
e-value: 1.4E-6
score: 37.9
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 43..148
e-value: 2.6E-22
score: 81.1
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 87..143
e-value: 1.6E-4
score: 21.5
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 66..149
score: 9.388031
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 228..244
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 182..221
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 182..244
NoneNo IPR availablePANTHERPTHR12620:SF35SPLICING FACTOR U2AF SMALL SUBUNIT Acoord: 1..242
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 80..152
IPR036855Zinc finger, CCCH-type superfamilySUPERFAMILY90229CCCH zinc fingercoord: 151..179

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000069_piloncontigtig00000069_pilon:338673..339827 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5051.t1Ggra5051.t1Gracilaria gracilis GNS1m malemRNAtig00000069_pilon 338673..339827 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra5051.t1 ID=Ggra5051.t1|Name=Ggra5051.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=245bp
MAEHLASIYGTEKDKINCPFYFKIGACRHGDRCSRVHHKPLFSPTILLHN
LYVSPDQLISLATKQGLPPPIIPQEDIIHHFEDFYYDIYDELVKHGAIDK
LYVCENLADHLAGNTYVKFFDEHSAQLALQAVNGRFYAGRVVKAEFSPVT
DFREGKCRPFEKDGQCERGDFCHFLHLRRQPRSERDPPPDPYAHRREERP
SYRSSAPYYDSRRREDRYRTSWYESGVNNNERERRHSYERRHSR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009145U2AF_small
IPR000571Znf_CCCH
IPR003954RRM_dom_euk
IPR012677Nucleotide-bd_a/b_plait_sf
IPR000504RRM_dom
IPR035979RBD_domain_sf
IPR036855Znf_CCCH_sf