Ggra5040.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra5040.t1
Unique NameGgra5040.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length461
Homology
BLAST of Ggra5040.t1 vs. uniprot
Match: A0A2V3J0J1 (Eukaryotic translation initiation factor 5B n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J0J1_9FLOR)

HSP 1 Score: 139 bits (349), Expect = 1.690e-31
Identity = 77/117 (65.81%), Postives = 84/117 (71.79%), Query Frame = 0
Query:  320 SGLGVCVQAYFLGSLEALLDYLRSTKIP------------------------KEYATILGFDVPVEKEAREVAEHVGVQIVTGDIVYHVFDQFTAYMEKVKKKRREAVNDEMVFPVI 412
            SGLGV VQA  LGSLEALL+YLRS KIP                        KEYATIL FDVPVEKEARE+AE  GVQI T DI+YH+FDQFTAYME+VKK+RREAVNDE+VFPVI
Sbjct:  917 SGLGVYVQASTLGSLEALLEYLRSEKIPVAGINIGPVHKRDVTKASTMLERRKEYATILAFDVPVEKEARELAESEGVQIFTADIIYHLFDQFTAYMERVKKQRREAVNDEVVFPVI 1033          
BLAST of Ggra5040.t1 vs. uniprot
Match: A0A813BT41 (Hypothetical protein (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813BT41_9DINO)

HSP 1 Score: 124 bits (310), Expect = 2.320e-28
Identity = 60/104 (57.69%), Postives = 77/104 (74.04%), Query Frame = 0
Query:  236 GKPKILDRIRRTNVKDAEAGGITQQIGVTYFPIDAAKKEATKLEAGKKLTYNVPSLFIIDTPKHESFSNLRSRGSALCDIAILFSGLGVCVQAYFLGSLEALLD 339
            GK KILD+IRRTNV++ EAGGITQQIG TYFP+D  +K+  K+E+  +L Y VP L +IDTP HESF+NLRSRG+ LCDIA+L   L   ++   + SL  L+D
Sbjct:  120 GKTKILDKIRRTNVQEGEAGGITQQIGATYFPMDRLRKQIDKVESKVELEYKVPGLLVIDTPGHESFTNLRSRGTNLCDIAVLVVDLMHGLEPQTIESLNLLMD 223          
BLAST of Ggra5040.t1 vs. uniprot
Match: A0A484E2V8 (Tr-type G domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E2V8_BRELC)

HSP 1 Score: 128 bits (322), Expect = 4.580e-28
Identity = 69/141 (48.94%), Postives = 89/141 (63.12%), Query Frame = 0
Query:  236 GKPKILDRIRRTNVKDAEAGGITQQIGVTYFPIDAAKKEATKLEAGKKLTYNVPSLFIIDTPKHESFSNLRSRGSALCDIAILFSGLGVCVQAYFLGSLEALLD-----YLRSTKIPKEYATILGFDVPVEKEAREVAEHV 371
            GK K+LD IRRT V+DAEAGGITQQIG T+FP+DA K++  +L    KL Y +P L +IDTP HESF+NLRSRGS+LCDIAIL   +   ++   L SL  L        +   KI + Y      D+PV++  +   EHV
Sbjct:  391 GKTKLLDNIRRTKVQDAEAGGITQQIGATFFPVDAIKQKTARLAETMKLEYRLPGLLVIDTPGHESFTNLRSRGSSLCDIAILVVDIMHGLEPQTLESLRLLRQKKAPFVVALNKIDRCYGWKTMLDMPVQEALKHQNEHV 531          
BLAST of Ggra5040.t1 vs. uniprot
Match: R7QN18 (Eukaryotic translation initiation factor 5B n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QN18_CHOCR)

HSP 1 Score: 125 bits (314), Expect = 4.980e-27
Identity = 70/119 (58.82%), Postives = 81/119 (68.07%), Query Frame = 0
Query:  320 SGLGVCVQAYFLGSLEALLDYLRSTKIP------------------------KEYATILGFDVPVEKEAREVAEHVGVQIVTGDIVYHVFDQFTAYMEKVKKKRREAVNDEMVFPVIER 414
            SG GV VQA  LGSLEALL++LRS+KIP                        KEYATIL FDV VEKEARE+AE  GV+I T DI+YH+FDQFTAYME++KK RRE V+DE+VFP I R
Sbjct:  769 SGKGVYVQASTLGSLEALLEFLRSSKIPVSGINIGPVHKRDVTKASTMLERGKEYATILAFDVGVEKEARELAEDAGVRIFTADIIYHLFDQFTAYMEQIKKDRREQVSDEVVFPSISR 887          
BLAST of Ggra5040.t1 vs. uniprot
Match: I2JSL7 (Eukaryotic translation initiation factor 5B n=1 Tax=Brettanomyces bruxellensis AWRI1499 TaxID=1124627 RepID=I2JSL7_DEKBR)

HSP 1 Score: 124 bits (312), Expect = 7.170e-27
Identity = 61/104 (58.65%), Postives = 78/104 (75.00%), Query Frame = 0
Query:  236 GKPKILDRIRRTNVKDAEAGGITQQIGVTYFPIDAAKKEATKLEAGKKLTYNVPSLFIIDTPKHESFSNLRSRGSALCDIAILFSGLGVCVQAYFLGSLEALLD 339
            GK K+LD+IR+TNV+  EAGGITQQIG TYFP+DA +K+   ++  +KLTY+VP L +IDTP HESF+NLRSRGS+LC+IAIL   +   +Q   L SL  L D
Sbjct:  247 GKTKLLDKIRQTNVQGGEAGGITQQIGATYFPVDALRKKTEVMQKFEKLTYDVPGLLVIDTPGHESFTNLRSRGSSLCNIAILVVDITHGLQQQTLESLRLLRD 350          
BLAST of Ggra5040.t1 vs. uniprot
Match: A0A7D9H0Y8 (Eukaryotic translation initiation factor 5B n=4 Tax=Dekkera bruxellensis TaxID=5007 RepID=A0A7D9H0Y8_DEKBR)

HSP 1 Score: 124 bits (312), Expect = 8.370e-27
Identity = 61/104 (58.65%), Postives = 78/104 (75.00%), Query Frame = 0
Query:  236 GKPKILDRIRRTNVKDAEAGGITQQIGVTYFPIDAAKKEATKLEAGKKLTYNVPSLFIIDTPKHESFSNLRSRGSALCDIAILFSGLGVCVQAYFLGSLEALLD 339
            GK K+LD+IR+TNV+  EAGGITQQIG TYFP+DA +K+   ++  +KLTY+VP L +IDTP HESF+NLRSRGS+LC+IAIL   +   +Q   L SL  L D
Sbjct:  448 GKTKLLDKIRQTNVQGGEAGGITQQIGATYFPVDALRKKTEVMQKFEKLTYDVPGLLVIDTPGHESFTNLRSRGSSLCNIAILVVDITHGLQQQTLESLRLLRD 551          
BLAST of Ggra5040.t1 vs. uniprot
Match: A0A8H8A7P2 (Eukaryotic translation initiation factor 5B n=1 Tax=Pneumocystis sp. 'macacae' TaxID=2698480 RepID=A0A8H8A7P2_9ASCO)

HSP 1 Score: 124 bits (312), Expect = 9.280e-27
Identity = 62/104 (59.62%), Postives = 77/104 (74.04%), Query Frame = 0
Query:  236 GKPKILDRIRRTNVKDAEAGGITQQIGVTYFPIDAAKKEATKLEAGKKLTYNVPSLFIIDTPKHESFSNLRSRGSALCDIAILFSGLGVCVQAYFLGSLEALLD 339
            GK KILD+IR+TNV++ EAGGITQQIG TYFP+D  K++ + L+  KKL Y VP L +IDTP HESF+NLRSRGS+LCDIAIL   +   ++   L SL  L D
Sbjct:  491 GKTKILDKIRQTNVQEGEAGGITQQIGATYFPMDYMKQKISVLDKNKKLEYKVPGLLVIDTPGHESFTNLRSRGSSLCDIAILVVDIMHGLERQTLESLRLLKD 594          
BLAST of Ggra5040.t1 vs. uniprot
Match: A0A2P4YDG2 (Eukaryotic translation initiation factor 5B (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YDG2_9STRA)

HSP 1 Score: 123 bits (308), Expect = 1.140e-26
Identity = 66/141 (46.81%), Postives = 89/141 (63.12%), Query Frame = 0
Query:  236 GKPKILDRIRRTNVKDAEAGGITQQIGVTYFPIDAAKKEATKLEAGKKLTYNVPSLFIIDTPKHESFSNLRSRGSALCDIAILFSGLGVCVQAYFLGSLEALLD-----YLRSTKIPKEYATILGFDVPVEKEAREVAEHV 371
            GK K+LD IR+T V+DAEAGGITQQIG T+FP++A K++  +L    KL Y +P L +IDTP HESF+NLR+RGS+LCDIAIL   +   ++   L SL  L        +   KI + Y      D+PV++  +   EHV
Sbjct:  394 GKTKLLDNIRKTKVQDAEAGGITQQIGATFFPVEAIKQKTARLAETMKLEYRLPGLLVIDTPGHESFTNLRTRGSSLCDIAILVVDIMHGLEPQTLESLRLLRQKKAPFVVALNKIDRCYGWKTMPDMPVQEALKHQNEHV 534          
BLAST of Ggra5040.t1 vs. uniprot
Match: A0A024GC03 (Tr-type G domain-containing protein n=2 Tax=Albugo TaxID=65356 RepID=A0A024GC03_9STRA)

HSP 1 Score: 124 bits (311), Expect = 1.180e-26
Identity = 67/141 (47.52%), Postives = 87/141 (61.70%), Query Frame = 0
Query:  236 GKPKILDRIRRTNVKDAEAGGITQQIGVTYFPIDAAKKEATKLEAGKKLTYNVPSLFIIDTPKHESFSNLRSRGSALCDIAILFSGLGVCVQAYFLGSLEALLD-----YLRSTKIPKEYATILGFDVPVEKEAREVAEHV 371
            GK KILD IRRT V+D EAGGITQQIG T+FP++A K    +L    KL Y +P L +IDTP HESF+NLRSRGS+LCDIAIL   +   ++   L SL  L        +   KI + Y   +  D+P+++  +   EHV
Sbjct:  403 GKTKILDNIRRTKVQDGEAGGITQQIGATFFPVEAIKHRTERLTKTMKLEYRLPGLLVIDTPGHESFTNLRSRGSSLCDIAILVVDIMHGLEPQTLESLRLLRQKKAPFIVALNKIDRCYGWKVMADMPIQEALKHQNEHV 543          
BLAST of Ggra5040.t1 vs. uniprot
Match: M7NTE9 (Eukaryotic translation initiation factor 5B n=1 Tax=Pneumocystis murina (strain B123) TaxID=1069680 RepID=M7NTE9_PNEMU)

HSP 1 Score: 124 bits (311), Expect = 1.230e-26
Identity = 64/112 (57.14%), Postives = 79/112 (70.54%), Query Frame = 0
Query:  236 GKPKILDRIRRTNVKDAEAGGITQQIGVTYFPIDAAKKEATKLEAGKKLTYNVPSLFIIDTPKHESFSNLRSRGSALCDIAILFSGLGVCVQAYFLGSLEALLDYLRSTKIP 347
            GK KILD+IR+TNV++ E GGITQQIG TYFP+D+ K++   L+  +KL Y VP L IIDTP HESF+NLRSRGS+LCDIAIL   +   ++   L SL      LRS K P
Sbjct:  476 GKTKILDKIRQTNVQEGEVGGITQQIGATYFPVDSIKQKIAVLDQNEKLEYKVPGLLIIDTPGHESFANLRSRGSSLCDIAILVVDIMHGLEPQTLESLSL----LRSRKTP 583          
The following BLAST results are available for this feature:
BLAST of Ggra5040.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J0J11.690e-3165.81Eukaryotic translation initiation factor 5B n=1 Ta... [more]
A0A813BT412.320e-2857.69Hypothetical protein (Fragment) n=1 Tax=Symbiodini... [more]
A0A484E2V84.580e-2848.94Tr-type G domain-containing protein n=1 Tax=Bremia... [more]
R7QN184.980e-2758.82Eukaryotic translation initiation factor 5B n=1 Ta... [more]
I2JSL77.170e-2758.65Eukaryotic translation initiation factor 5B n=1 Ta... [more]
A0A7D9H0Y88.370e-2758.65Eukaryotic translation initiation factor 5B n=4 Ta... [more]
A0A8H8A7P29.280e-2759.62Eukaryotic translation initiation factor 5B n=1 Ta... [more]
A0A2P4YDG21.140e-2646.81Eukaryotic translation initiation factor 5B (Fragm... [more]
A0A024GC031.180e-2647.52Tr-type G domain-containing protein n=2 Tax=Albugo... [more]
M7NTE91.230e-2657.14Eukaryotic translation initiation factor 5B n=1 Ta... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR023115Translation initiation factor IF- 2, domain 3PFAMPF11987IF-2coord: 349..388
e-value: 3.0E-7
score: 30.4
IPR036925Translation initiation factor IF-2, domain 3 superfamilyGENE3D3.40.50.10050coord: 348..405
e-value: 1.6E-14
score: 55.8
IPR036925Translation initiation factor IF-2, domain 3 superfamilySUPERFAMILY52156Initiation factor IF2/eIF5b, domain 3coord: 316..401
IPR027417P-loop containing nucleoside triphosphate hydrolaseGENE3D3.40.50.300coord: 232..347
e-value: 2.0E-16
score: 62.1
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 236..319
IPR000795Translational (tr)-type GTP-binding domainPFAMPF00009GTP_EFTUcoord: 248..319
e-value: 3.9E-6
score: 26.5
NoneNo IPR availablePANTHERPTHR43381:SF4EUKARYOTIC TRANSLATION INITIATION FACTOR 5Bcoord: 109..318
coord: 320..413
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 339..460
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..314
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 315..338
IPR015760Translation initiation factor IF- 2PANTHERPTHR43381TRANSLATION INITIATION FACTOR IF-2-RELATEDcoord: 109..318
IPR015760Translation initiation factor IF- 2PANTHERPTHR43381TRANSLATION INITIATION FACTOR IF-2-RELATEDcoord: 320..413

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000069_piloncontigtig00000069_pilon:273372..278101 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5040.t1Ggra5040.t1Gracilaria gracilis GNS1m malemRNAtig00000069_pilon 273372..278101 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra5040.t1 ID=Ggra5040.t1|Name=Ggra5040.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=461bp
MIRTLIMKPIYNQEQWLEFSTTFRKDGRMPMSREALRILLKSYYQHQIAA
RVGSERNVLATDTFQQLFGSASWYPQAVVTIKDVDITFSSGPEAIAKEEP
GPKADAEVEVLLEELGRAGDAPAAKKKSKKKKIKSAAKAEDDEDGTGEGV
FEASEAEKPKKRVRKHLREWCTVQKKGKPKGTEEPGVDHFEEEVQATTKE
RLHVPETEKAKEVPQPQPQPEVIPDAWDELPDTGEGKPKILDRIRRTNVK
DAEAGGITQQIGVTYFPIDAAKKEATKLEAGKKLTYNVPSLFIIDTPKHE
SFSNLRSRGSALCDIAILFSGLGVCVQAYFLGSLEALLDYLRSTKIPKEY
ATILGFDVPVEKEAREVAEHVGVQIVTGDIVYHVFDQFTAYMEKVKKKRR
EAVNDEMVFPVIERSTGARVQKEGRHRSWCGCDGGHPKSWNASSVETWSS
MARRWTHSEH*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR023115TIF_IF2_dom3
IPR036925TIF_IF2_dom3_sf
IPR027417P-loop_NTPase
IPR000795T_Tr_GTP-bd_dom
IPR015760TIF_IF2