Ggra4965.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra4965.t1
Unique NameGgra4965.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length217
Homology
BLAST of Ggra4965.t1 vs. uniprot
Match: A0A2V3IEE0 (50S ribosomal protein L6 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IEE0_9FLOR)

HSP 1 Score: 306 bits (783), Expect = 2.980e-103
Identity = 146/216 (67.59%), Postives = 176/216 (81.48%), Query Frame = 0
Query:    1 MASRSLPFVTLKQFYKYLARYVRFHPSSTRLIPPAKQIRAPTQPGVGVFFYPPDQWQKTAVFAAGPLGETYQTFHPSKIQLFRPIGVEESEQNVQVCYWGVGDALKVTKNLASGVTEGFAVNLELHGVGYRAEAIPDQNKLVLRLGFSHVVEHPLDDGDVFINVVNPQLIQVAGINRSKVHHVAATIRSYRPPEPYKGKGVRYKSEPVRRKQTKKD 216
            MA+R LP ++LKQFYKYL RYVR  P +TR+  P KQ+R PT+PGV +FFYPPD  QKT  FAAGPLG T  T HP+  Q+ R + + E +   ++ YWGVG+AL VTKNLASGVT+GFAVNLELHGVGYRAEA+P++N+L+LRLG SHV+E PL    VFINV++PQL+QVAGINR KVH +AATIRSYRPPEPYKGKG+RYKSEPVRRK+ +KD
Sbjct:    1 MAARMLPIISLKQFYKYLGRYVRASPFATRITAPTKQLRVPTEPGVALFFYPPDSCQKTTAFAAGPLGHTASTIHPANFQIVRSVALPEEQLIPRINYWGVGNALSVTKNLASGVTDGFAVNLELHGVGYRAEALPERNQLLLRLGLSHVIELPLHHPHVFINVISPQLVQVAGINRPKVHQLAATIRSYRPPEPYKGKGIRYKSEPVRRKRARKD 216          
BLAST of Ggra4965.t1 vs. uniprot
Match: R7QTP6 (Ribosomal_L6 domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QTP6_CHOCR)

HSP 1 Score: 292 bits (748), Expect = 7.010e-98
Identity = 139/216 (64.35%), Postives = 175/216 (81.02%), Query Frame = 0
Query:    2 ASRSLPF-VTLKQFYKYLARYVRFHPSSTRLIPPAKQIRAPTQPGVGVFFYPPDQWQKTAVFAAGPLGETYQTFHPSKIQLFRPIGVEESEQNVQVCYWGVGDALKVTKNLASGVTEGFAVNLELHGVGYRAEAIPDQNKLVLRLGFSHVVEHPLDDGDVFINVVNPQLIQVAGINRSKVHHVAATIRSYRPPEPYKGKGVRYKSEPVRRKQTKKD 216
            +S+ LP  ++L+QFYKYL R+ R+ PSSTR +PP+K+IRAP +PGVG+FFYPPD W KT   AAGPLG+T +T HPSK Q+ RPI   + +   ++ YWGVG A++VTK+L SGV +GFAV LELHGVGYRAEA  ++NKLV+RLG+SHVVE PL++ DVF  V+NPQL+QVAGINR+ VH +AA +R  RPPEPYKGKGVRYK+EPVRRK+ KKD
Sbjct:    4 SSKLLPGPISLRQFYKYLGRFARYSPSSTRAVPPSKRIRAPIEPGVGIFFYPPDSWTKTHALAAGPLGQTEETIHPSKFQISRPITAPDGKYTPELQYWGVGGAVQVTKSLISGVEQGFAVALELHGVGYRAEADEERNKLVMRLGYSHVVEFPLNENDVFFTVINPQLVQVAGINRADVHQMAAKVRKARPPEPYKGKGVRYKNEPVRRKEAKKD 219          
BLAST of Ggra4965.t1 vs. uniprot
Match: A0A5J4YV69 (50S ribosomal protein L6 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YV69_PORPP)

HSP 1 Score: 156 bits (394), Expect = 9.400e-44
Identity = 97/237 (40.93%), Postives = 130/237 (54.85%), Query Frame = 0
Query:    9 VTLKQFYKYLARYVRFHPSSTRLIPPAKQ----IRAP---TQPGVGVFFYPPDQWQKTAVFAAGPLGETYQTFHPSKIQLFRPIGVEESEQNVQ----------------------VCYWGVGDALKVTKNLASGVTEGFAVNLELHGVGYRAEAIPDQNKLVLRLGFSHVVEHPLDDGD-VFINVVNPQLIQVAGINRSKVHHVAATIRSYRPPEPYKGKGVRYKSEPVRRKQTKK 215
            VTL    KY  R +  HP++ R IPP ++    +RAP   T+P  G+F+YP D   K   FA GP GE        ++Q+   +  + S   VQ                      +  W  G  +KV++NL +GV  GF V LELHGVGYRAE   D+N++ LRLGFS+ +  P++  D V   VV PQ++QV G N  KVH  AA +R+ R PEPYKGKGVRY++E V+ K  KK
Sbjct:   20 VTLNHVKKYFGRLLWRHPAAGRAIPPPREWRTALRAPGMETEP-TGIFYYPADAVHKLHAFAIGPQGEAVSRVGHVRVQISHDLDPQNSLGVVQAGSAAKAGNAGAAEVPQSTLATIGMWSTGPGMKVSRNLVAGVHSGFVVTLELHGVGYRAEEERDKNRIGLRLGFSNTLYVPIERADGVKYRVVEPQVVQVYGCNLEKVHGAAAALRAMRKPEPYKGKGVRYRNEYVKLKAAKK 255          
BLAST of Ggra4965.t1 vs. uniprot
Match: A0A1T4RV56 (50S ribosomal protein L6 n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A1T4RV56_9HYPH)

HSP 1 Score: 114 bits (284), Expect = 3.150e-28
Identity = 65/134 (48.51%), Postives = 88/134 (65.67%), Query Frame = 0
Query:   82 FRPIGVEESEQNVQVCYWGVGDALKVTKNLASGVTEGFAVNLELHGVGYRAEAIPDQNKLVLRLGFSHVVEHPLDDGDVFINVVNPQLIQVAGINRSKVHHVAATIRSYRPPEPYKGKGVRYKSEPVRRKQTKK 215
            F+P G E     +Q   WG   A  + +N+  GV++GF +NLE++GVGYRA+A  D   L L+LGFSH VE P+  G + I  V P  I++ G +R KV  +AA IRS RPPEPYKGKG++Y +E +RRK+ KK
Sbjct:   52 FKPRG-ESRRARMQ---WGT--ARNLARNMVRGVSDGFTINLEINGVGYRAQA--DAKNLKLQLGFSHDVEVPIPAG-IQIKAVKPTEIEITGSDRQKVGQLAAEIRSLRPPEPYKGKGIKYSTETIRRKEGKK 176          
BLAST of Ggra4965.t1 vs. uniprot
Match: A0A257SZ92 (50S ribosomal protein L6 n=3 Tax=Acidithiobacillus TaxID=119977 RepID=A0A257SZ92_9PROT)

HSP 1 Score: 113 bits (283), Expect = 4.090e-28
Identity = 70/154 (45.45%), Postives = 90/154 (58.44%), Query Frame = 0
Query:   65 GPLGETYQTFHPS-KIQLFRPIG--VEESEQNVQVCYWGVGDALKVTKNLASGVTEGFAVNLELHGVGYRAEAIPDQNKLVLRLGFSHVVEHPLDDGDVFINVVNPQLIQVAGINRSKVHHVAATIRSYRPPEPYKGKGVRYKSEPVRRKQTKK 215
            GP GE    FHPS ++QL   +       +QN Q      G    +  N+  GV++GF   LE+ GVGYRA+A      L L LGFSH V++P+ D D+ I       I + GI++ KV  +AA IR+YRPPEPYKGKGVRY  E VRRK+ KK
Sbjct:   28 GPKGEISAPFHPSVELQLDADVASLTWAEDQNAQA-----GTMRAILSNMVQGVSQGFEQKLEIIGVGYRAQA--KGKSLSLSLGFSHPVDYPVPD-DISIETPTQTEIVIRGIDKQKVGQIAADIRAYRPPEPYKGKGVRYAGENVRRKEAKK 173          
BLAST of Ggra4965.t1 vs. uniprot
Match: A0A512NBY1 (50S ribosomal protein L6 n=1 Tax=Reyranella soli TaxID=1230389 RepID=A0A512NBY1_9HYPH)

HSP 1 Score: 113 bits (283), Expect = 4.440e-28
Identity = 59/114 (51.75%), Postives = 79/114 (69.30%), Query Frame = 0
Query:  102 GDALKVTKNLASGVTEGFAVNLELHGVGYRAEAIPDQNKLVLRLGFSHVVEHPLDDGDVFINVVNPQLIQVAGINRSKVHHVAATIRSYRPPEPYKGKGVRYKSEPVRRKQTKK 215
            G A  +  NL  GV++GF +NLE++GVGYRA+A  D   L L+LGFSH VE P+  G + I  + P  I++ G +R KV  +AA IRS RPPEPYKGKG++Y +E +RRK+ KK
Sbjct:   66 GTARNLASNLVKGVSDGFTINLEINGVGYRAQA--DAKNLKLQLGFSHDVEVPIPAG-IQIKALKPTEIEITGADRQKVGQLAAEIRSLRPPEPYKGKGIKYSTETIRRKEGKK 176          
BLAST of Ggra4965.t1 vs. uniprot
Match: A0A1H8XXW2 (50S ribosomal protein L6 n=6 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A1H8XXW2_9PROT)

HSP 1 Score: 112 bits (279), Expect = 1.750e-27
Identity = 58/114 (50.88%), Postives = 79/114 (69.30%), Query Frame = 0
Query:  102 GDALKVTKNLASGVTEGFAVNLELHGVGYRAEAIPDQNKLVLRLGFSHVVEHPLDDGDVFINVVNPQLIQVAGINRSKVHHVAATIRSYRPPEPYKGKGVRYKSEPVRRKQTKK 215
            G A  +  N+  GV++GF +NLE++GVGYRA+A  D   L L+LGFSH VE P+  G + I  + P  I++ G +R KV  +AA IRS RPPEPYKGKG++Y +E +RRK+ KK
Sbjct:   66 GTARNLASNVVRGVSDGFTINLEINGVGYRAQA--DAKNLKLQLGFSHDVEVPIPAG-IQIKALKPTEIEITGADRQKVGQLAAEIRSLRPPEPYKGKGIKYSTEKIRRKEGKK 176          
BLAST of Ggra4965.t1 vs. uniprot
Match: 50S ribosomal protein L6 n=1 Tax=Caenibacillus caldisaponilyticus TaxID=1674942 RepID=UPI000988354C (50S ribosomal protein L6 n=1 Tax=Caenibacillus caldisaponilyticus TaxID=1674942 RepID=UPI000988354C)

HSP 1 Score: 111 bits (278), Expect = 2.610e-27
Identity = 72/159 (45.28%), Postives = 93/159 (58.49%), Query Frame = 0
Query:   57 QKTAVFAAGPLGETYQTFHPS-KIQLFRPIGVEESEQNVQVCYWGVGDALKVTKNLASGVTEGFAVNLELHGVGYRAEAIPDQNKLVLRLGFSHVVEHPLDDGDVFINVVNPQLIQVAGINRSKVHHVAATIRSYRPPEPYKGKGVRYKSEPVRRKQTK 214
            +   V   GP GE   TFHP  KI L   +   E   + ++     G    + KN+  GVT+G+   LEL GVGYRA+     NKLVL +G+SH VE   +DG + I+V     + V GIN+ +V  VAA IRS RPPEPYKGKG+RY+ E VRRK+ K
Sbjct:   21 ENNKVTVKGPKGELTYTFHPDMKIILEDNVVRVERPSDSKLHRSLHGTTSSLIKNMVEGVTKGYEKRLELVGVGYRAQK--SGNKLVLNVGYSHPVEIVPEDG-IEIDVEGNNKVIVKGINKERVGAVAANIRSVRPPEPYKGKGIRYEGENVRRKEGK 176          
BLAST of Ggra4965.t1 vs. uniprot
Match: A0A3M0YIT8 (50S ribosomal protein L6 n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3M0YIT8_9GAMM)

HSP 1 Score: 110 bits (275), Expect = 6.930e-27
Identity = 71/170 (41.76%), Postives = 92/170 (54.12%), Query Frame = 0
Query:   56 WQKTAVFAAGPLGETYQTFHPSKIQLFRPIGVE-ESEQNVQVCYWG---------VGDALKVTKNLASGVTEGFAVNLELHGVGYRAEAIPDQNKLVLRLGFSHVVEHPLDDGDVFINVVNPQLIQVAGINRSKVHHVAATIRSYRPPEPYKGKGVRYKSEPVRRKQTKK 215
            W    +   GP G+         +Q   P GVE E E +V  C W           G    V  N+ +GVT+GF   L L GVGYRA+     N L L LGFSH V++P+ +G + I   +P  + V GI++ KV  VAA IR++RPPEPYKGKGVRY  E + RK+ KK
Sbjct:   19 WAGRTISVKGPKGQ---------LQFTLPPGVEVEQEDSVLRCRWVSTDPKAKALAGTTRAVLNNIVTGVTQGFEKRLVLVGVGYRAQV--QGNVLNLTLGFSHPVQYPIPEG-ITIETPSPTEVVVKGIDKQKVGQVAAEIRAFRPPEPYKGKGVRYADEVIVRKEAKK 176          
BLAST of Ggra4965.t1 vs. uniprot
Match: A0A6N7FHR8 (50S ribosomal protein L6 n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A6N7FHR8_9PROT)

HSP 1 Score: 110 bits (275), Expect = 6.930e-27
Identity = 72/163 (44.17%), Postives = 92/163 (56.44%), Query Frame = 0
Query:   61 VFAAGPLGETYQTFHPSKIQL--------FRPIGVEESEQNVQVCYWGVGDALKVTKNLASGVTEGFAVNLELHGVGYRAEAIPDQNKLVLRLGFSHVVEHPLDDGDVFINVVNPQLIQVAGINRSKVHHVAATIRSYRPPEPYKGKGVRYKSEPVRRKQTKK 215
            V A G LGE   T    +++L         RP G  +  +N+    WG   +L    NL +GV EGF + LE+ GVGYRA    D   LVL+LG+SH V HP+ +G + I    P  I V+G +R KV  VAA IR YR PEPYKGKG+RY  E + RK+ KK
Sbjct:   24 VTAKGKLGELSMTL-VDEVELSRDDDKLIVRPRGESKQARNM----WGTTRSL--LHNLVTGVDEGFTIRLEIVGVGYRAAV--DSRTLVLQLGYSHEVRHPIPEG-ITIACATPTQISVSGADRQKVGQVAANIRGYRKPEPYKGKGIRYADEFILRKEGKK 176          
The following BLAST results are available for this feature:
BLAST of Ggra4965.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IEE02.980e-10367.5950S ribosomal protein L6 n=1 Tax=Gracilariopsis ch... [more]
R7QTP67.010e-9864.35Ribosomal_L6 domain-containing protein n=1 Tax=Cho... [more]
A0A5J4YV699.400e-4440.9350S ribosomal protein L6 n=1 Tax=Porphyridium purp... [more]
A0A1T4RV563.150e-2848.5150S ribosomal protein L6 n=2 Tax=Alphaproteobacter... [more]
A0A257SZ924.090e-2845.4550S ribosomal protein L6 n=3 Tax=Acidithiobacillus... [more]
A0A512NBY14.440e-2851.7550S ribosomal protein L6 n=1 Tax=Reyranella soli T... [more]
A0A1H8XXW21.750e-2750.8850S ribosomal protein L6 n=6 Tax=Alphaproteobacter... [more]
50S ribosomal protein L6 n=1 Tax=Caenibacillus caldisaponilyticus TaxID=1674942 RepID=UPI000988354C2.610e-2745.2850S ribosomal protein L6 n=1 Tax=Caenibacillus cal... [more]
A0A3M0YIT86.930e-2741.7650S ribosomal protein L6 n=1 Tax=Gammaproteobacter... [more]
A0A6N7FHR86.930e-2744.1750S ribosomal protein L6 n=1 Tax=Alphaproteobacter... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019906Ribosomal protein L6, bacterial-typePRINTSPR00059RIBOSOMALL6coord: 107..132
score: 49.38
coord: 137..153
score: 41.75
coord: 180..201
score: 63.78
IPR019906Ribosomal protein L6, bacterial-typePANTHERPTHR11655:SF14REPLICATION FACTOR C SUBUNIT 1coord: 59..215
IPR036789Ribosomal protein L6, alpha-beta domain superfamilyGENE3D3.90.930.12coord: 119..216
e-value: 1.2E-29
score: 104.2
IPR036789Ribosomal protein L6, alpha-beta domain superfamilySUPERFAMILY56053Ribosomal protein L6coord: 119..215
IPR020040Ribosomal protein L6, alpha-beta domainPFAMPF00347Ribosomal_L6coord: 127..203
e-value: 1.7E-11
score: 44.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 195..216
IPR000702Ribosomal protein L6PANTHERPTHR1165560S/50S RIBOSOMAL PROTEIN L6/L9coord: 59..215
IPR002358Ribosomal protein L6, conserved sitePROSITEPS00525RIBOSOMAL_L6_1coord: 193..201

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000014_piloncontigtig00000014_pilon:185401..186051 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4965.t1Ggra4965.t1Gracilaria gracilis GNS1m malemRNAtig00000014_pilon 185401..186051 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra4965.t1 ID=Ggra4965.t1|Name=Ggra4965.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=217bp
MASRSLPFVTLKQFYKYLARYVRFHPSSTRLIPPAKQIRAPTQPGVGVFF
YPPDQWQKTAVFAAGPLGETYQTFHPSKIQLFRPIGVEESEQNVQVCYWG
VGDALKVTKNLASGVTEGFAVNLELHGVGYRAEAIPDQNKLVLRLGFSHV
VEHPLDDGDVFINVVNPQLIQVAGINRSKVHHVAATIRSYRPPEPYKGKG
VRYKSEPVRRKQTKKD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019906Ribosomal_L6_bac-type
IPR036789Ribosomal_L6_a/b-dom_sf
IPR020040Ribosomal_L6_a/b-dom
IPR000702Ribosomal_L6
IPR002358Ribosomal_L6_CS