Ggra4961.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra4961.t1
Unique NameGgra4961.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length410
Homology
BLAST of Ggra4961.t1 vs. uniprot
Match: A0A2V3IEH3 (Nucleolar protein 8 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IEH3_9FLOR)

HSP 1 Score: 258 bits (660), Expect = 4.670e-79
Identity = 180/415 (43.37%), Postives = 243/415 (58.55%), Query Frame = 0
Query:    1 MLVVRQSQLLQEAPPQDLPRIFVGNLTEHVLDSSLHQLLSRFGTISNFSRSKCSTFAHISLRADETSITKCISSLNRVKWFGTSLRVEKARQHYLNRLREEWKLRSCAAECLSTETNGEQ--ETASKPPFHNFPKGRHIRFSFPDEPLHLPSHSVPSEIEDQLDEPLSRPVRIRS--------SAFASKQNSLQTTLSLFGLNASQDIDHSKPTKRSLQEMSPSGGNPKRSRCVQVETDGDSKLMKPERENDGKPGE-NTHSEDTCRDIKSKRDSPEGTV--DTK-QPYSKENAEAVEEDPSKIDMERERSSHLQVFRSLFPNQVHLFKKSERRNVSRGDMVENKLFTRYRRAALYTMLQTPGTDKLPLQSTKSTGSKSKRETTKDTRQVLERDPEQYTTFAASYRKVALYKKLQ 401
            M++  Q+  L  APP+D+PRIFVGNL  ++ DSSL  LLSRFG+I NFSRS C+TFAH+SL+ADE ++TKCISSLN VKWFGTSLRVE+A+Q+YL+ L +EW+  S   E  S  T   Q  +  SKPPFHN  KG H+RFS  DE   LP    P+     LD  L R  + R         SAF SK+++LQTTLSLFGL+A+     ++    +   + P+   PKR+R     ++G          +D  PG  N  S  T + I    DS  G V  DT  QPYS E+A+AVEEDP++ID++RER+  L ++RS+F +Q+    K++ +N ++   + +     +RRAALYT LQ+   + L     K    K   E     R+ + RD    T F A  R+ ALYK LQ
Sbjct:    1 MMMSSQTPELHNAPPRDIPRIFVGNLNLNITDSSLRTLLSRFGSIDNFSRSSCATFAHVSLKADEAALTKCISSLNHVKWFGTSLRVERAKQYYLHCLLDEWQQTSVHTETESVSTQHHQGGDGPSKPPFHNMSKGSHVRFSLVDE--ELPQKPSPAP----LDNDLPRRDKTRQTTQMPKNPSAFRSKEHALQTTLSLFGLSAANPRPRNEKRAPADAPVQPT---PKRARAP---SNGGPN-------HDDTPGPANPSSHTTSQHI---TDSHSGKVHPDTAHQPYSIESAKAVEEDPNRIDLQRERNLSLTIYRSMFTDQIAPHTKAQLQNSAKPAEIVSPKAAPFRRAALYTKLQSTNREGLTSSPPKPARDKPVNECVH--REDVARDSNVRTRFTALSRRAALYKSLQ 391          
BLAST of Ggra4961.t1 vs. uniprot
Match: A0A8B8JFX2 (uncharacterized protein LOC113846366 n=1 Tax=Abrus precatorius TaxID=3816 RepID=A0A8B8JFX2_ABRPR)

HSP 1 Score: 70.1 bits (170), Expect = 2.750e-9
Identity = 41/125 (32.80%), Postives = 61/125 (48.80%), Query Frame = 0
Query:   20 RIFVGNLTEHVLDSSLHQLLSRFGTISNFS--RSKCSTFAHISLRADETSITKCISSLNRVKWFGTSLRVEKARQHYLNRLREEWKLRSCAAECLSTETNGEQETASKPPFHNFPKGRHIRFSFP 142
            RIFVG L E V    L +L    GT+      R+K  +FA++    D  S++K  S  N   W G  LR+EKA++HYL RL+ EW+  +  A       + + E        + P  +H++  FP
Sbjct:   13 RIFVGGLGEGVSTEDLRRLFGSLGTVQEIQTIRTKGRSFAYLDFLTDHKSLSKLFSKYNGCLWKGGKLRLEKAKEHYLMRLKREWEQDALDATQSPITASKDSEELPNTTHTSKPITKHLKIFFP 137          
BLAST of Ggra4961.t1 vs. uniprot
Match: A0A6J1KY23 (uncharacterized protein LOC111499238 n=3 Tax=Cucurbita TaxID=3660 RepID=A0A6J1KY23_CUCMA)

HSP 1 Score: 69.7 bits (169), Expect = 3.990e-9
Identity = 42/127 (33.07%), Postives = 69/127 (54.33%), Query Frame = 0
Query:   20 RIFVGNLTEHVLDSSLHQLLSRFGTIS---NFSRSKCSTFAHISL-RADETSITKCISSLNRVKWFGTSLRVEKARQHYLNRLREEWKLRSCAAECLSTETNGEQETASKPPFHNFPKGRHIRFSFP 142
            RI+VG L   + +  L ++    G +    +F RSK  +FA++    + ++SI+K  S+ N   W G  LR+EKA++HYL RLR EW+     AE ++ +   + ET++     +  K  HI+  FP
Sbjct:   12 RIYVGGLGASMTEDDLRKVFQSVGGVVEAVDFIRSKSRSFAYVDFFPSSQSSISKLFSTYNGCAWKGGKLRLEKAKEHYLARLRREWEE---DAEIMNYDDGADLETSAPESTEHVAKSEHIQIFFP 135          
BLAST of Ggra4961.t1 vs. uniprot
Match: A0A445C8I2 (RRM domain-containing protein n=5 Tax=Arachis TaxID=3817 RepID=A0A445C8I2_ARAHY)

HSP 1 Score: 63.2 bits (152), Expect = 1.970e-8
Identity = 35/88 (39.77%), Postives = 49/88 (55.68%), Query Frame = 0
Query:   20 RIFVGNLTEHVLDSSLHQLLSRFGTISNFS--RSKCSTFAHISLR---ADETSITKCISSLNRVKWFGTSLRVEKARQHYLNRLREEW 102
            RIFVG L E V    LH L S FG +      R+K  +FA++       D+ S+++  S  N   W G  L++EKA++HYL RL+ EW
Sbjct:   10 RIFVGGLGESVTKQDLHSLFSSFGNVEAVETIRTKGRSFAYLDFLPFPTDDKSLSRLFSKYNGCVWKGEKLKLEKAKEHYLVRLKREW 97          
BLAST of Ggra4961.t1 vs. uniprot
Match: A0A2Z6PE17 (RRM domain-containing protein n=1 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6PE17_TRISU)

HSP 1 Score: 63.2 bits (152), Expect = 2.600e-8
Identity = 32/86 (37.21%), Postives = 51/86 (59.30%), Query Frame = 0
Query:   20 RIFVGNLTEHVLDSSLHQLLSRFGTISNFS--RSKCSTFAHISLRADETSITKCISSLNRVKWFGTSLRVEKARQHYLNRLREEWK 103
            RIFVG + E V    + +L    GT+ +    R+K  + A++   +D  S++K  S  N   W G  LR+EKA++HYL+RL++EW+
Sbjct:   12 RIFVGGIGEAVTADDIRRLFESLGTVQSLETIRTKGRSQAYLDFLSDPKSLSKLFSKYNGCVWKGGKLRLEKAKEHYLDRLKKEWE 97          
BLAST of Ggra4961.t1 vs. uniprot
Match: A0A835M7Q1 (RRM domain-containing protein n=1 Tax=Coptis chinensis TaxID=261450 RepID=A0A835M7Q1_9MAGN)

HSP 1 Score: 67.0 bits (162), Expect = 2.750e-8
Identity = 38/85 (44.71%), Postives = 51/85 (60.00%), Query Frame = 0
Query:   20 RIFVGNLTEHVLDSSLHQLLSRFGTISNFSRSKCSTFAHISLR-ADETSITKCISSLNRVKWFGTSLRVEKARQHYLNRLREEWK 103
            RIFVG L E V ++ L +  S  GT+ +    K S FA++  R + E S+ K  SS N   W G  LR+EKA++HYL RLR EW+
Sbjct:   15 RIFVGGLGEKVTEADLQKTFSSLGTVKSIEFVKTS-FAYVDFRPSSEKSLNKLFSSYNGCVWKGGRLRLEKAKEHYLVRLRREWE 98          
BLAST of Ggra4961.t1 vs. uniprot
Match: I1HX38 (RRM domain-containing protein n=2 Tax=Brachypodium distachyon TaxID=15368 RepID=I1HX38_BRADI)

HSP 1 Score: 66.6 bits (161), Expect = 3.470e-8
Identity = 40/111 (36.04%), Postives = 61/111 (54.95%), Query Frame = 0
Query:   20 RIFVGNLTEHVLDSSLHQLLSRFGTISN--FSRSKCSTFAHISLRA-DETSITKCISSLNRVKWFGTSLRVEKARQHYLNRLREEWKLRSCAAECLSTETNGE-QETASKP 126
            RIFVG L E V  + L  +    G ++   F RS    FA++      + ++ K  S+ N  KW G  L++EKA++HYL RL+ EW+  + AA+ ++ + N E QE   KP
Sbjct:   15 RIFVGGLAEGVTAADLGGVFGSLGRVAGVQFVRSSGRCFAYVDFHCPSDKALAKLFSTYNGCKWKGGKLKLEKAKEHYLVRLKREWEQEAAAAQEMAVKNNVEKQEEKPKP 125          
BLAST of Ggra4961.t1 vs. uniprot
Match: A0A1S2XEV7 (uncharacterized protein LOC101506793 n=1 Tax=Cicer arietinum TaxID=3827 RepID=A0A1S2XEV7_CICAR)

HSP 1 Score: 66.6 bits (161), Expect = 4.180e-8
Identity = 34/86 (39.53%), Postives = 52/86 (60.47%), Query Frame = 0
Query:   20 RIFVGNLTEHVLDSSLHQLLSRFGTISNFS--RSKCSTFAHISLRADETSITKCISSLNRVKWFGTSLRVEKARQHYLNRLREEWK 103
            RIFVG L+E V    + +L    GTI +    R+K  + A++   +D  S++K  S  N   W G  LR+EKA++HYL+RL++EW+
Sbjct:   12 RIFVGGLSEAVTAEDIRRLFESLGTIQSLETIRTKGRSLAYLDFLSDPKSLSKLFSKYNGCVWKGGKLRLEKAKEHYLDRLKKEWE 97          
BLAST of Ggra4961.t1 vs. uniprot
Match: A0A6J0L938 (uncharacterized protein LOC108827467 n=1 Tax=Raphanus sativus TaxID=3726 RepID=A0A6J0L938_RAPSA)

HSP 1 Score: 66.2 bits (160), Expect = 5.150e-8
Identity = 47/126 (37.30%), Postives = 65/126 (51.59%), Query Frame = 0
Query:   20 RIFVGNLTEHVLDSSLHQLLSRFGTIS--NFSRSKCSTFAHISLR-ADETSITKCISSLNRVKWFGTSLRVEKARQHYLNRLREEWKLRSCAAECLSTETNGEQETASKPPFHNFPKGRHIRFSFP 142
            R+ VG L E V    L ++ S  G++    F R+K  +FA+I    A E S+TK  S+ N  KW G  LR+EKA++HY+ RL+ EW      AE  S  T+   ET   P   + P   H+   FP
Sbjct:   11 RLHVGGLGESVGRDDLLKIFSPMGSVEAVEFVRTKGRSFAYIDFSPASENSLTKLFSTYNGCKWKGGKLRLEKAKEHYMARLKREW------AESASVPTD---ETVKAPDKSSAPS-THLNIFFP 126          
BLAST of Ggra4961.t1 vs. uniprot
Match: uncharacterized protein LOC110815622 n=1 Tax=Carica papaya TaxID=3649 RepID=UPI000B8CAA60 (uncharacterized protein LOC110815622 n=1 Tax=Carica papaya TaxID=3649 RepID=UPI000B8CAA60)

HSP 1 Score: 66.2 bits (160), Expect = 5.320e-8
Identity = 44/132 (33.33%), Postives = 67/132 (50.76%), Query Frame = 0
Query:   20 RIFVGNLTEHVLDSSLHQLLSRFGTISNFS--RSKCSTFAHIS-LRADETSITKCISSLNRVKWFGTSLRVEKARQHYLNRLREEWKLRSCAAECLSTETNGEQETASKPPFHNFPKG------RHIRFSFP 142
            R++VG L E V    L ++ +  G ++     R+K  +FAHI  L + + S+TK  S+ N   W G  L++EKA++ YL+RLR EWK     A+  S   N   +T    P    PK       + ++F FP
Sbjct:   17 RVYVGGLGESVTSDDLRKIFTSMGAVNGVDIVRTKGRSFAHIDFLPSSDKSLTKLFSTYNGCVWKGGRLKLEKAKEDYLSRLRREWKE---DAKLASISPNTSVDTIKNVPSSEKPKETLKSEKKQLKFFFP 145          
The following BLAST results are available for this feature:
BLAST of Ggra4961.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IEH34.670e-7943.37Nucleolar protein 8 n=1 Tax=Gracilariopsis chorda ... [more]
A0A8B8JFX22.750e-932.80uncharacterized protein LOC113846366 n=1 Tax=Abrus... [more]
A0A6J1KY233.990e-933.07uncharacterized protein LOC111499238 n=3 Tax=Cucur... [more]
A0A445C8I21.970e-839.77RRM domain-containing protein n=5 Tax=Arachis TaxI... [more]
A0A2Z6PE172.600e-837.21RRM domain-containing protein n=1 Tax=Trifolium su... [more]
A0A835M7Q12.750e-844.71RRM domain-containing protein n=1 Tax=Coptis chine... [more]
I1HX383.470e-836.04RRM domain-containing protein n=2 Tax=Brachypodium... [more]
A0A1S2XEV74.180e-839.53uncharacterized protein LOC101506793 n=1 Tax=Cicer... [more]
A0A6J0L9385.150e-837.30uncharacterized protein LOC108827467 n=1 Tax=Rapha... [more]
uncharacterized protein LOC110815622 n=1 Tax=Carica papaya TaxID=3649 RepID=UPI000B8CAA605.320e-833.33uncharacterized protein LOC110815622 n=1 Tax=Caric... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 20..88
e-value: 8.4E-7
score: 38.6
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 21..81
e-value: 2.4E-4
score: 20.9
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 19..92
score: 9.098089
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 11..103
e-value: 3.6E-10
score: 41.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 198..295
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 207..221
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 364..378
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 350..378
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 277..295
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 224..268
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 15..91

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000014_piloncontigtig00000014_pilon:173638..174867 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4961.t1Ggra4961.t1Gracilaria gracilis GNS1m malemRNAtig00000014_pilon 173638..174867 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra4961.t1 ID=Ggra4961.t1|Name=Ggra4961.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=410bp
MLVVRQSQLLQEAPPQDLPRIFVGNLTEHVLDSSLHQLLSRFGTISNFSR
SKCSTFAHISLRADETSITKCISSLNRVKWFGTSLRVEKARQHYLNRLRE
EWKLRSCAAECLSTETNGEQETASKPPFHNFPKGRHIRFSFPDEPLHLPS
HSVPSEIEDQLDEPLSRPVRIRSSAFASKQNSLQTTLSLFGLNASQDIDH
SKPTKRSLQEMSPSGGNPKRSRCVQVETDGDSKLMKPERENDGKPGENTH
SEDTCRDIKSKRDSPEGTVDTKQPYSKENAEAVEEDPSKIDMERERSSHL
QVFRSLFPNQVHLFKKSERRNVSRGDMVENKLFTRYRRAALYTMLQTPGT
DKLPLQSTKSTGSKSKRETTKDTRQVLERDPEQYTTFAASYRKVALYKKL
QLVQHSDAV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf