Ggra4937.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra4937.t1
Unique NameGgra4937.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length270
Homology
BLAST of Ggra4937.t1 vs. uniprot
Match: A0A2V3IFE3 (Protein hedgehog n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IFE3_9FLOR)

HSP 1 Score: 188 bits (478), Expect = 7.940e-56
Identity = 91/177 (51.41%), Postives = 127/177 (71.75%), Query Frame = 0
Query:   75 EELIKWVEQCFPGDSKVQVQSGSTLKLRELQTGQRVLQSNGQFSAVFAFTHRLAHGLFPFRRVCTGGDECVTASHGHYVFGENRLMAAGGVKVHDWLQAANGSLVQVTRAHDVWRRGLYNPQTMSGELVVDGFRVSSYTMEVRPAVAQSLLAPLRAAFAVVGVDVTGGGLDNVAAHW 251
            EELI+ VE CFPG++ V+V++   + +R L+TG RVLQ+NG +S VF F+HRL   + PFRR+CT   +C+TASHGHY++ + +L+AAG +K  D+L         V  + DVW +GLYNP T++GE VV+GFRVS YT  VRP +A++LL+PLRAAF V+G D++GG L +V   W
Sbjct:   51 EELIEQVESCFPGNAAVKVENIGWVPMRNLRTGDRVLQANGAYSEVFGFSHRLRTSIHPFRRICTV-TKCMTASHGHYIYTKQKLVAAGAIKAGDFLATGVDEYEAVIGSEDVWEQGLYNPHTLTGEFVVEGFRVSCYTTAVRPDLAKTLLSPLRAAFRVIGADISGGLLASVRQPW 226          
BLAST of Ggra4937.t1 vs. uniprot
Match: A0A2V3IGM3 (Sonic hedgehog protein A n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IGM3_9FLOR)

HSP 1 Score: 145 bits (366), Expect = 4.310e-38
Identity = 79/176 (44.89%), Postives = 109/176 (61.93%), Query Frame = 0
Query:   84 CFPGDSKVQVQSGSTLKLRELQTGQRVLQS----NGQFSAVFAFTHRLAHGLFPFRRVCTGGDECVTASHGHYVFGENRLMAAGGVKVHDWLQAANGSLVQVTRAHDVWRRGLYNPQTMSGELVVDGFRVSSYTMEVRPAVAQSLLAPLRAAFAVVGVDVTGGGLDNVAAHW-TGW 254
            CFP  + V       +++ +LQ G +VL +    N  +S VF F+HR+ H  FPF+ + T  +  +  S GHYV+  + L AA  ++ +D LQ A+GS   V R H+VW +GLYNP T  GEL+VDGFRVSSYT  VR  VA +LLAP+RAAFA++ VD+T G  ++    W T W
Sbjct:  143 CFPASAVVTTLDRGAIRISQLQLGDKVLVAKVGTNSTYSTVFTFSHRIDHSWFPFKSIETE-EGTLVVSAGHYVYTRDTLRAAKTLRPNDELQLADGSFTPVQRVHNVWEKGLYNPHTELGELLVDGFRVSSYTTSVRTNVATALLAPVRAAFALLRVDITAGLFEHSVHSWITRW 317          
BLAST of Ggra4937.t1 vs. uniprot
Match: A0A1X6NXN0 (HintN domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NXN0_PORUM)

HSP 1 Score: 134 bits (337), Expect = 4.380e-32
Identity = 75/170 (44.12%), Postives = 101/170 (59.41%), Query Frame = 0
Query:   84 CFPGDSKVQVQSGSTLKLRELQTGQRVLQSNGQFSAVFAFTHRLAHGLFPFRRVCTGGDECVTASHGHYVFGENRLMAAGGVKVHDWLQAAN--GSLVQVTRAHDVWRRGLYNPQTMSGELVVDGFRVSSYTMEVRPAVAQSLLAPLRAAFAVVGVDVTG--GGLDNVAA 249
            CFP D+ V++  G T+ + ++  G  V  S   +S VF FTHR+  G  PF R+ T     +TA+ GHYV+   RL AAG V+V D L+      +   VT    V   GLYNPQT+ G++VV+G R S+YTM + PAVA +LLAPLRA F + G+  T   GG D +AA
Sbjct:  480 CFPADATVELADGRTVPMADVALGDHVRVSATAYSPVFLFTHRVRGGRRPFVRLTTAAGASLTATAGHYVYANGRLTAAGAVRVGDRLETVGDAATCTVVTATARVAGTGLYNPQTLHGDIVVNGIRASTYTMAIEPAVASTLLAPLRALFRLAGLTTTALDGGADRLAA 649          
BLAST of Ggra4937.t1 vs. uniprot
Match: A0A2V3IX71 (Indian hedgehog B protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IX71_9FLOR)

HSP 1 Score: 129 bits (323), Expect = 1.060e-30
Identity = 67/169 (39.64%), Postives = 103/169 (60.95%), Query Frame = 0
Query:   84 CFPGDSKVQVQSGSTLKLRELQTGQRVLQSNGQFSAVFAFTHRLAHGLFPFRRVCTGGDECVTASHGHYVFGENRLMAAGGVKVHDWLQAANGSLVQVTRAHDVWRRGLYNPQTMSGELVVDGFRVSSYTMEVRPAVAQSLLAPLRAAFAVVGVDVTG--GGLDNVAAH 250
            CFP D+ VQ++ GS  K+ ++Q G RV+  +G FS VF FTH+L+   + F  + T     ++ + GHY++    L AA  VK  D L  A+ SL  VT+   V   GL+NPQT+ G++VV+G + S+YT  V P +A +LL+PLRAA++ +G  +     G D +A++
Sbjct:  310 CFPADATVQLEDGSAKKMGDVQLGDRVMVDHGIFSPVFMFTHKLSTVRYGFVNIQTSSGNTLSLTPGHYLYVNGHLSAASTVKNGDTLMLADSSLTDVTQVSTVTSTGLFNPQTLHGDIVVNGLKASTYTTAVEPGLAHALLSPLRAAYSRLGFSLRAFEAGADRIASY 478          
BLAST of Ggra4937.t1 vs. uniprot
Match: A0A1X6P3Z4 (HintN domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P3Z4_PORUM)

HSP 1 Score: 124 bits (311), Expect = 1.380e-29
Identity = 63/158 (39.87%), Postives = 92/158 (58.23%), Query Frame = 0
Query:   84 CFPGDSKVQVQSGSTLKLRELQTGQRVLQSNGQFSAVFAFTHRLAHGLFPFRRVCTGGDECVTASHGHYVFGENRLMAAGGVKVHDWLQAANGSLVQV-TRAHDVWRRGLYNPQTMSGELVVDGFRVSSYTMEVRPAVAQSLLAPLRAAFAVVGVDVT 240
            CFP  ++V++ +G T+ + +L  G  V  S   FS VF FTH++A G FPF ++ T     +T +  HYV+   ++ AAG VK+ D L+    +   + T    V   GLYNPQT+ G++ V+G R S++T  V P VA +LLAPLRA F   GV  +
Sbjct:  208 CFPASAQVELDTGRTVTMDQLAVGDNVRVSADAFSRVFLFTHKVAAGSFPFVKLTTASGASLTVTRSHYVYANGKMTAAGAVKLGDELELVGAAKCDIITATSPVTETGLYNPQTLHGDIFVNGIRASTFTTAVEPRVASALLAPLRALFRATGVSTS 365          
BLAST of Ggra4937.t1 vs. uniprot
Match: A0A2V3J669 (Indian hedgehog B protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J669_9FLOR)

HSP 1 Score: 122 bits (306), Expect = 1.970e-28
Identity = 67/172 (38.95%), Postives = 105/172 (61.05%), Query Frame = 0
Query:   75 EELIKWVEQCFPGDSKVQVQSGSTLKLRELQTGQRVLQSNGQFSAVFAFTHRLAHGLFPFRRVCTGGDECVTASHGHYVFGENRLMAAGGVKVHDWLQAANGSLVQVTRAHDVWRRGLYNPQTMSGELVVDGFRVSSYTMEVRPAVAQSLLAPLRAAFAVVGVDVTGGGLDN 246
            +E +K  ++CFPG + VQ+++G  + + +++ G RVL +   FS VF FTHR+ + L  F ++ T   E ++ +  HY++ ++ L+ A        +Q ++G +  +T    V   GLYNPQT+ G++VVD  RVSSYT  V+P +A S+LAPLRA F   G  VTG  L+N
Sbjct:  272 QEALKSEDKCFPGSAMVQLENGHRIPMSDVRIGHRVLVAPETFSTVFMFTHRVDNVLSEFIQIRTETGEILSLTASHYIYLDSSLVPAKYATTGQQVQLSDGRVSFITAVSTVRDSGLYNPQTLHGDIVVDNIRVSSYTDAVKPHIAHSMLAPLRAVFDRFGFYVTG--LEN 441          
BLAST of Ggra4937.t1 vs. uniprot
Match: R7QIA6 (HintN domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QIA6_CHOCR)

HSP 1 Score: 122 bits (305), Expect = 2.760e-28
Identity = 61/167 (36.53%), Postives = 99/167 (59.28%), Query Frame = 0
Query:   84 CFPGDSKVQVQSGSTLKLRELQTGQRVLQSNGQFSAVFAFTHRLAHGLFPFRRVCTGGDECVTASHGHYVFGENRLMAAGGVKVHDWLQAANGSLVQVTRAHDVWRRGLYNPQTMSGELVVDGFRVSSYTMEVRPAVAQSLLAPLRAAFAVVGVDVT--GGGLDNVA 248
            CFP D+ V++++GS   + +++ G RV  ++G FS VF FTH+ A  +  F R+ T     ++A+ GHY++  N   AAG  KV D L+  +GS   V+    V   GL+NPQT+ G+++V+  R S++T  + P+ AQ++LAPLR  +   G+       G D++A
Sbjct:  285 CFPADASVELENGSFKTMAQVELGDRVKVADGSFSDVFMFTHKDASAVHDFVRISTRSGASLSATRGHYIYINNAFAAAGSAKVGDTLELGDGSKTLVSNVGIVKGTGLFNPQTVHGDIIVNSVRASTFTRTIEPSAAQAMLAPLRMLYDTFGISTAFLNNGADSIA 451          
BLAST of Ggra4937.t1 vs. uniprot
Match: A0A1X6P3Y5 (HintN domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P3Y5_PORUM)

HSP 1 Score: 122 bits (306), Expect = 5.820e-28
Identity = 63/158 (39.87%), Postives = 92/158 (58.23%), Query Frame = 0
Query:   84 CFPGDSKVQVQSGSTLKLRELQTGQRVLQSNGQFSAVFAFTHRLAHGLFPFRRVCTGGDECVTASHGHYVFGENRLMAAGGVKVHDWLQAANGSLVQ-VTRAHDVWRRGLYNPQTMSGELVVDGFRVSSYTMEVRPAVAQSLLAPLRAAFAVVGVDVT 240
            CFP  ++V++ +G T+ + +L  G  V  S   FS VF FTH++A G F F ++ T     +T +  HYV+   ++ AAG VK+ D L+    +    VT    +   GLYNPQT+ G++VV+G R S++T  V P VA +LLAPLRA F   GV  +
Sbjct:  429 CFPASAEVELDTGRTVTMDQLAVGDNVRVSADAFSRVFLFTHKIATGSFGFVKLTTASAASLTVTRSHYVYANGKMTAAGAVKLGDKLELVGAAKCDIVTAISPITETGLYNPQTLHGDIVVNGIRASTFTTAVEPRVASALLAPLRALFRATGVSTS 586          
BLAST of Ggra4937.t1 vs. uniprot
Match: A0A1X6P3R7 (HintN domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P3R7_PORUM)

HSP 1 Score: 121 bits (304), Expect = 1.320e-27
Identity = 61/158 (38.61%), Postives = 92/158 (58.23%), Query Frame = 0
Query:   84 CFPGDSKVQVQSGSTLKLRELQTGQRVLQSNGQFSAVFAFTHRLAHGLFPFRRVCTGGDECVTASHGHYVFGENRLMAAGGVKVHDWLQAANGSLVQV-TRAHDVWRRGLYNPQTMSGELVVDGFRVSSYTMEVRPAVAQSLLAPLRAAFAVVGVDVT 240
            CFP  ++V++ +G T+ + +L  G  V  +   FS VF FTH++A G F F ++ T     +T +  HYV+   ++ AAG VK+ D L+    +   + T    V   GLYNPQT+ G++VV+G R S++T  V P VA +LLAPLRA F   G+  +
Sbjct:  493 CFPASAEVELDTGRTVTMDQLAVGDNVRVAADAFSRVFLFTHKIASGSFAFVKLTTASGASLTVTRSHYVYANGKMTAAGAVKLGDKLELVGAAKCDIITATSPVTETGLYNPQTLHGDIVVNGIRASTFTTAVEPRVASALLAPLRALFRATGMSTS 650          
BLAST of Ggra4937.t1 vs. uniprot
Match: warthog protein 6-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DDBBD (warthog protein 6-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DDBBD)

HSP 1 Score: 115 bits (289), Expect = 5.300e-27
Identity = 57/154 (37.01%), Postives = 90/154 (58.44%), Query Frame = 0
Query:   84 CFPGDSKVQVQSGSTLKLRELQTGQRVLQSNGQFSAVFAFTHRLAHGLFPFRRVCTGGDECVTASHGHYVFGENRLMAAGGVKVHDWLQAANGSLVQVTRAHDVWRRGLYNPQTMSGELVVDGFRVSSYTMEVRPAVAQSLLAPLRAAFAVVGV 237
            CFPG + V+++SG+  ++ +++ G RV     +FS VF FTH+   G++ F ++ T     V+ + GHY+     L AA  V V D LQ   G   +VT    V  +G+YNPQT+ G++VV G RVS+YT  V P +A + L  +R+ + + G+
Sbjct:  132 CFPGSAMVELESGARQRMDKMKIGDRVKVGRAEFSEVFMFTHKTHTGIYDFVKITTSSGHSVSLTGGHYIHVNGGLAAASVVAVGDMLQLGTGEATEVTDVTCVQSKGIYNPQTLHGDIVVGGIRVSTYTTAVEPRLAHAGLGAIRSMYRIFGL 285          
The following BLAST results are available for this feature:
BLAST of Ggra4937.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IFE37.940e-5651.41Protein hedgehog n=1 Tax=Gracilariopsis chorda Tax... [more]
A0A2V3IGM34.310e-3844.89Sonic hedgehog protein A n=1 Tax=Gracilariopsis ch... [more]
A0A1X6NXN04.380e-3244.12HintN domain-containing protein n=1 Tax=Porphyra u... [more]
A0A2V3IX711.060e-3039.64Indian hedgehog B protein n=1 Tax=Gracilariopsis c... [more]
A0A1X6P3Z41.380e-2939.87HintN domain-containing protein n=1 Tax=Porphyra u... [more]
A0A2V3J6691.970e-2838.95Indian hedgehog B protein n=1 Tax=Gracilariopsis c... [more]
R7QIA62.760e-2836.53HintN domain-containing protein n=1 Tax=Chondrus c... [more]
A0A1X6P3Y55.820e-2839.87HintN domain-containing protein n=1 Tax=Porphyra u... [more]
A0A1X6P3R71.320e-2738.61HintN domain-containing protein n=1 Tax=Porphyra u... [more]
warthog protein 6-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DDBBD5.300e-2737.01warthog protein 6-like n=1 Tax=Mercenaria mercenar... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001767Hedgehog protein, Hint domainPFAMPF01079Hintcoord: 82..234
e-value: 2.3E-16
score: 59.9
NoneNo IPR availableGENE3D2.170.16.10Hedgehog/Intein (Hint) domaincoord: 84..213
e-value: 3.0E-24
score: 88.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 52..72
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 57..71
NoneNo IPR availablePANTHERPTHR11889:SF31PROTEIN HEDGEHOGcoord: 72..238
NoneNo IPR availablePANTHERPTHR11889HEDGEHOGcoord: 72..238
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..19
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 20..269
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 15..19
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..14
NoneNo IPR availableCDDcd00081Hintcoord: 84..210
e-value: 6.96512E-6
score: 42.6414
IPR006141Intein N-terminal splicing regionPROSITEPS50817INTEIN_N_TERcoord: 84..153
score: 8.477194
IPR036844Hint domain superfamilySUPERFAMILY51294Hedgehog/intein (Hint) domaincoord: 84..212

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000157_piloncontigtig00000157_pilon:284525..285334 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4937.t1Ggra4937.t1Gracilaria gracilis GNS1m malemRNAtig00000157_pilon 284525..285334 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra4937.t1 ID=Ggra4937.t1|Name=Ggra4937.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=270bp
MPLSFFVAMLVVLLMTTCAIPVTRNASARCLPPEERDSTSGGVGRQMMTC
GGEGYAEASAEEEDEDEDEHDKQFEELIKWVEQCFPGDSKVQVQSGSTLK
LRELQTGQRVLQSNGQFSAVFAFTHRLAHGLFPFRRVCTGGDECVTASHG
HYVFGENRLMAAGGVKVHDWLQAANGSLVQVTRAHDVWRRGLYNPQTMSG
ELVVDGFRVSSYTMEVRPAVAQSLLAPLRAAFAVVGVDVTGGGLDNVAAH
WTGWAALRGERAVSAAVGF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001767Hedgehog_Hint
IPR006141Intein_N
IPR036844Hint_dom_sf