Ggra4859.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Ggra4859.t1
Unique Name	Ggra4859.t1
Type	polypeptide
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	355

Homology

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BLAST of Ggra4859.t1 vs. uniprot
Match: R7Q204 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q204_CHOCR)

HSP 1 Score: 344 bits (883), Expect = 4.060e-114
Identity = 203/354 (57.34%), Postives = 249/354 (70.34%), Query Frame = 0

Query:    1 MYLNNIFEQVPSPDL--PTIPDPNVSTTFLP-------PPEPNWTPVLQE-DNXXXXXXXXXXXXXXXXXPTP-AGKRRKQELHRRHSKRYRDNLGELFTSLEQLLPRVVPGCKLKTKSQIIANSVNAIKHLRSEVSTLEIQYVLSSPTNRTQWVEDTVSSALCFQDVVEPFMRLLLTMQSWKHSELWSRHEMSILEDGTKGTTPVSKPTESVQDLRASSPKHFFLKLLNTWSMHDLDA-TLRVSYEHLSDAARNQVVRVADNSLVGRVSSSLAPEVIDFRDSDSSASFLRARAAQQCGLVICFAVPFLVRGHVFAVVLFFDDHPRANFSQDMNVAQDLASSLGNCYGASSVHS 342
            MYLN++F+Q+       P +  P  ++  LP       PP+ +  P   E +   XXXXXXXXXXXXXX P P  GK+RKQELHRRHSKRYRDNLGELF +LEQLLP+VVPGCKLKTKSQIIANSV A+K LR+EVS LE+Q+VLSSP NRT+WVEDTV +A CFQ V EPFMRLL+ +Q WKHSELW R+E+++L DGT    PV  PT +V DL   S K FFLKL  T S+HD+ A T+  +Y   S  +        D+S+VGR +S L+PE ID RD ++   F R  AA+QCG   CFA+PFLVRGHVFA +LF+DD  R +   D+N+AQD+AS LGNCYGAS+  S
Sbjct:    1 MYLNHLFQQIDGDQTQPPPLQTPVTASHPLPAHLSPTVPPDSHPKPTNDEAEYDEXXXXXXXXXXXXXXKPQPIVGKKRKQELHRRHSKRYRDNLGELFQNLEQLLPKVVPGCKLKTKSQIIANSVQAVKRLRTEVSALEMQFVLSSPANRTKWVEDTVQAATCFQAVTEPFMRLLVGIQRWKHSELWCRYEVNLLPDGTDSGAPVINPTNTVHDLGPLSSKKFFLKLDRTVSVHDITASTVPEAYRMFSKISHMATFVNGDDSIVGRTASKLSPEWIDLRDPEACHGFKRGEAARQCGFTTCFALPFLVRGHVFASILFYDDQQRFDAGPDINIAQDIASCLGNCYGASAAQS 354

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BLAST of Ggra4859.t1 vs. uniprot
Match: R7Q8M0 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q8M0_CHOCR)

HSP 1 Score: 129 bits (325), Expect = 4.530e-33
Identity = 68/135 (50.37%), Postives = 88/135 (65.19%), Query Frame = 0

Query:  207 ASSPKHFFLKLLNTWSMHDLDA-TLRVSYEHLSDAARNQVVRVADNSLVGRVSSSLAPEVIDFRDSDSSASFLRARAAQQCGLVICFAVPFLVRGHVFAVVLFFDDHPRANFSQDMNVAQDLASSLGNCYGASSV 340
            A  P+  FLKL  T S+HD+ A T+   +   S  +        DNS+VGR +S L+PE ID RD +S   F R  AA+QCG   CFA+PFLVRGHVFA +LF+DD  R++   D+N+AQD+AS LGNCYGAS+ 
Sbjct:   20 ARCPRKSFLKLDITASVHDITASTIPKVFRMFSKISHMATFVNDDNSIVGRTASKLSPEWIDLRDPESCHGFKRGEAARQCGFTACFALPFLVRGHVFASILFYDDQQRSDVRPDINIAQDIASCLGNCYGASAA 154

The following BLAST results are available for this feature:

BLAST of Ggra4859.t1 vs. uniprot

BLAST of Ggra4859.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
R7Q204	4.060e-114	57.34	Uncharacterized protein n=1 Tax=Chondrus crispus T...	[more]
R7Q8M0	4.530e-33	50.37	Uncharacterized protein n=1 Tax=Chondrus crispus T...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR029016	GAF-like domain superfamily	GENE3D	3.30.450.40		coord: 217..333 e-value: 2.0E-5 score: 26.0
IPR036638	Helix-loop-helix DNA-binding domain superfamily	GENE3D	4.10.280.10		coord: 52..134 e-value: 6.6E-7 score: 31.1
IPR036638	Helix-loop-helix DNA-binding domain superfamily	SUPERFAMILY	47459	HLH, helix-loop-helix DNA-binding domain	coord: 66..132
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 39..57
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..76
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 14..36
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 310..354
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..286
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 287..309
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PROSITE	PS50888	BHLH	coord: 68..121 score: 9.06393

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000090_pilon	contig	tig00000090_pilon:303289..304353 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra4859.t1	Ggra4859.t1	Gracilaria gracilis GNS1m male	mRNA	tig00000090_pilon 303289..304353 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Ggra4859.t1 ID=Ggra4859.t1|Name=Ggra4859.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=355bp
MYLNNIFEQVPSPDLPTIPDPNVSTTFLPPPEPNWTPVLQEDNDDEQEDE
DDDDDDEQKRPTPAGKRRKQELHRRHSKRYRDNLGELFTSLEQLLPRVVP
GCKLKTKSQIIANSVNAIKHLRSEVSTLEIQYVLSSPTNRTQWVEDTVSS
ALCFQDVVEPFMRLLLTMQSWKHSELWSRHEMSILEDGTKGTTPVSKPTE
SVQDLRASSPKHFFLKLLNTWSMHDLDATLRVSYEHLSDAARNQVVRVAD
NSLVGRVSSSLAPEVIDFRDSDSSASFLRARAAQQCGLVICFAVPFLVRG
HVFAVVLFFDDHPRANFSQDMNVAQDLASSLGNCYGASSVHSHRGETDKQ
SSSQ*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR029016	GAF-like_dom_sf
IPR036638	HLH_DNA-bd_sf
IPR011598	bHLH_dom