Ggra4849.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra4849.t1
Unique NameGgra4849.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length160
Homology
BLAST of Ggra4849.t1 vs. uniprot
Match: A0A2V3IXI8 (NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial n=2 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IXI8_9FLOR)

HSP 1 Score: 268 bits (685), Expect = 3.340e-90
Identity = 123/149 (82.55%), Postives = 138/149 (92.62%), Query Frame = 0
Query:   10 VGTIGRLAPRTMRMMSTNSDQTINVLSGIPEKHAARRVRIYRPAKVATQQGRGSLTQMWKMSFEKLEGGDRWTNPLMGWTSTGDPLSNMGMSFPSKKAAIDYAERNGYEFNVFEPAEEKQHVKPIAPFKRSMVHHWRHSGTPVYDGDTS 158
            +G + RLAPR  R+MSTNSD TINVLSGIP+KHAARRVRI+RPAKVATQQGRGS+TQMWKM+FEK+EG DRWTNPLMGWTSTGDPLSNMGM+FP+K+AAI YAERNGY F V EPA+EK H+KPIAPFKR+MVHHWRHSGTPVY+GDTS
Sbjct:    7 IGNLRRLAPRATRLMSTNSDHTINVLSGIPDKHAARRVRIFRPAKVATQQGRGSITQMWKMTFEKIEGDDRWTNPLMGWTSTGDPLSNMGMAFPTKEAAIQYAERNGYGFTVVEPAQEKPHLKPIAPFKRAMVHHWRHSGTPVYEGDTS 155          
BLAST of Ggra4849.t1 vs. uniprot
Match: R7QMJ9 (NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QMJ9_CHOCR)

HSP 1 Score: 233 bits (595), Expect = 1.670e-76
Identity = 111/159 (69.81%), Postives = 131/159 (82.39%), Query Frame = 0
Query:    1 MSASKWIGTVGTIGRLAPRTMRMMSTNSDQTINVLSGIPEKHAARRVRIYRPAKVATQQGRGSLTQMWKMSFEKLEGGDRWTNPLMGWTSTGDPLSNMGMSFPSKKAAIDYAERNGYEFNVFEPAEEKQHVKPIAPFKRSMVHHWRHSGTPVYDGDTSK 159
            MS S W  ++    RLAP   R +S++ D ++NVLSGIP+KHAARRVRI+RPAKVATQQGRG LTQMW++ FEK+EG DRWTNPLMGWTSTGDPLSNMGM FP+K+AA+ YAERNGYE+ V EP EEKQ V+ IAPFKR+MVHHWRH   PVY+GD +K
Sbjct:    1 MSLSGWRASMT---RLAPMASRQLSSSRDASVNVLSGIPDKHAARRVRIHRPAKVATQQGRGGLTQMWRLQFEKIEGDDRWTNPLMGWTSTGDPLSNMGMPFPTKEAAMKYAERNGYEYKVIEPEEEKQQVRKIAPFKRAMVHHWRHEA-PVYEGDGAK 155          
BLAST of Ggra4849.t1 vs. uniprot
Match: M2Y480 (NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2Y480_GALSU)

HSP 1 Score: 165 bits (418), Expect = 3.090e-49
Identity = 70/130 (53.85%), Postives = 97/130 (74.62%), Query Frame = 0
Query:   27 NSDQTINVLSGIPEKHAARRVRIYRPAKVATQQGRGSLTQMWKMSFEKLEGGDRWTNPLMGWTSTGDPLSNMGMSFPSKKAAIDYAERNGYEFNVFEPAEEKQHVKPIAPFKRSMVHHWRHSGTPVYDGD 156
            +S  ++ V+SG+PEKH  RRV+IY+P + ATQQGRGS   +WK+ FEKLE GDRWTNPLMGWTSTGDPLS   + FP +++AI+YA R G  + ++EP EE++H++    + +SMVH W H+G P Y+ +
Sbjct:   50 DSVDSLGVISGVPEKHLKRRVKIYKPPRTATQQGRGSKYAVWKLEFEKLEEGDRWTNPLMGWTSTGDPLSQTAVYFPDRESAIEYARRYGLSYIIYEPEEEEEHIRSFNAYGKSMVHQWNHNGIPKYEDE 179          
BLAST of Ggra4849.t1 vs. uniprot
Match: A0A7S1TKT9 (NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial n=1 Tax=Erythrolobus australicus TaxID=1077150 RepID=A0A7S1TKT9_9RHOD)

HSP 1 Score: 163 bits (412), Expect = 3.300e-48
Identity = 72/131 (54.96%), Postives = 98/131 (74.81%), Query Frame = 0
Query:   29 DQTINVLSGIPEKHAARRVRIYRPAKVATQQGRGSLTQMWKMSFEKLEGGDRWTNPLMGWTSTGDPLSNMGMSFPSKKAAIDYAERNGYEFNVFEPAEEKQHVKPIAPFKRSMVHHWRHSGTPVYDGDTSK 159
            D  + V +G P +H  RR+RIYRPA+V+TQQG+G+ + +W+  FEK+EG DRWTNPLMGWTST DPLSN  +SF SK+ AI+YA R GY++ VFEP   K++++  + + +SMVH WRH   PV+D D+SK
Sbjct:   60 DTDLGVATGHPTEHLQRRLRIYRPARVSTQQGKGATSVLWRAEFEKIEGADRWTNPLMGWTSTADPLSNTSLSFASKEEAIEYATRYGYKYTVFEPEHSKENLRKFSAYGKSMVHQWRHK-IPVFDSDSSK 189          
BLAST of Ggra4849.t1 vs. uniprot
Match: M1VJG6 (NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial n=2 Tax=cellular organisms TaxID=131567 RepID=M1VJG6_CYAM1)

HSP 1 Score: 162 bits (410), Expect = 4.890e-48
Identity = 73/119 (61.34%), Postives = 92/119 (77.31%), Query Frame = 0
Query:   35 LSGIPEKHAARRVRIYRPAKVATQQGRGSLTQMWKMSFEKLEGGDRWTNPLMGWTSTGDPLSNMGMSFPSKKAAIDYAERNGYEFNVFEPAEEKQHVKPIAPFKRSMVHHWRHSGTPVY 153
            +SG P++H +RR+RIYRPA+ ATQQGRGS TQ+WK  FE  +G  RWTNPLMGW S+GDPLS   ++F SK+AAI YAE+ G+++ V++P EE  H + IAPF RSMVHHWRH G P Y
Sbjct:   39 VSGTPDEHRSRRLRIYRPARSATQQGRGSRTQLWKAEFEVQDGFGRWTNPLMGWYSSGDPLSQTTLTFSSKEAAIQYAEKYGFQYVVYDPHEEPLHERKIAPFTRSMVHHWRHEGIPRY 157          
BLAST of Ggra4849.t1 vs. uniprot
Match: A0A5J4YTN4 (NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YTN4_PORPP)

HSP 1 Score: 155 bits (393), Expect = 7.580e-46
Identity = 69/140 (49.29%), Postives = 99/140 (70.71%), Query Frame = 0
Query:   15 RLAPRTMRMMSTNSDQTINVLSGIPEKHAARRVRIYRPAKVATQQGRGSLTQMWKMSFEKLEGGDRWTNPLMGWTSTGDPLSNMGMSFPSKKAAIDYAERNGYEFNVFEPAEEKQHVKPIAPFKRSMVHHWRHSGTPVYD 154
            R+  R  R ++T+ +  +  +SG+PE+H  RR+RI++PA   TQQG+G  T++W   +EKLEGGDRWTNPLMGWTSTGDP+SN+ + FP K++AI YAE+ GY++ V E  +  ++V+    + +SMVH WRH   P YD
Sbjct:   11 RVLLRAQRGVTTDENAAMGAISGVPEEHLKRRLRIFQPASATTQQGKGVRTKLWVAIYEKLEGGDRWTNPLMGWTSTGDPVSNLRLEFPDKESAIQYAEKYGYKYVVSEREQRSENVRKFGAYGKSMVHQWRHK-PPKYD 149          
BLAST of Ggra4849.t1 vs. uniprot
Match: A0A7S3EMI8 (NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3EMI8_9RHOD)

HSP 1 Score: 155 bits (392), Expect = 3.650e-45
Identity = 76/156 (48.72%), Postives = 104/156 (66.67%), Query Frame = 0
Query:    2 SASKWIGTVGTIGRLAPRTMRMMSTNSDQTINVLSGIPEKHAARRVRIYRPAKVATQQGRGSLTQMWKMSFEKLEGG-DRWTNPLMGWTSTGDPLSNMGMSFPSKKAAIDYAERNGYEFNVFEPAEEKQHVKPIAPFKRSMVHHWRHSGTPVYDGD 156
            S+SK  G V  + + A   +     N    I +LSG PE+H +R VRIYRPA+ A QQG+ S    W + FEK +G  DRWTNPLMGWTSTGDPL+N+ +SFP+++AA++YA RNG+ + + +   EK++V+    F RSMVH WRH+  PVY+ D
Sbjct:   35 SSSKGQGEVAVV-KEAAGAVAEAEENPHDKIFMLSGAPEEHVSRHVRIYRPARSAMQQGKKSKNATWHLKFEKTDGDVDRWTNPLMGWTSTGDPLTNLNVSFPTQEAAVEYAVRNGFHYTIEDRLPEKENVRKFQAFGRSMVHQWRHNQIPVYEDD 189          
BLAST of Ggra4849.t1 vs. uniprot
Match: A0A7J7IMA9 (NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IMA9_9RHOD)

HSP 1 Score: 154 bits (388), Expect = 1.120e-44
Identity = 73/151 (48.34%), Postives = 99/151 (65.56%), Query Frame = 0
Query:    3 ASKWIGTVGTIGRLAPRTMRMMSTNSDQTINVLSGIPEKHAARRVRIYRPAKVATQQGRGSLTQMWKMSFEKLEGGDRWTNPLMGWTSTGDPLSNMGMSFPSKKAAIDYAERNGYEFNVFEPAEEKQHVKPIAPFKRSMVHHWRHSGTPVY 153
            AS+++  +    +L  R  R  S      +  +SG P++H  RR+RI+RPA+   QQGRGS TQ+WK  FE  +G  RWTNPLMGW S+GDPLS   ++F SK+AAI YAE+ G+++ V++P EE  H + I PF R+MVHHWRH   P Y
Sbjct:   10 ASRFLKRISLYSQLTRRHWRRFSEEHG-ALGRVSGTPDEHRTRRLRIFRPARSPVQQGRGSRTQLWKAEFEVQDGFGRWTNPLMGWYSSGDPLSQTTLTFSSKEAAIQYAEKYGFQYIVYDPHEEPIHERKIVPFGRAMVHHWRHEAIPQY 159          
BLAST of Ggra4849.t1 vs. uniprot
Match: A0A7S1TN47 (NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial n=1 Tax=Erythrolobus australicus TaxID=1077150 RepID=A0A7S1TN47_9RHOD)

HSP 1 Score: 136 bits (343), Expect = 2.570e-38
Identity = 59/106 (55.66%), Postives = 81/106 (76.42%), Query Frame = 0
Query:   54 KVATQQGRGSLTQMWKMSFEKLEGGDRWTNPLMGWTSTGDPLSNMGMSFPSKKAAIDYAERNGYEFNVFEPAEEKQHVKPIAPFKRSMVHHWRHSGTPVYDGDTSK 159
            +V+TQQG+G+ + +W+  FEK+EG DRWTNPLMGWTST DPLSN  +SF SK+ AI+YA R GY++ VFEP   K++++  + + +SMVH WRH   PV+D D+SK
Sbjct:   42 RVSTQQGKGATSVLWRAEFEKIEGADRWTNPLMGWTSTADPLSNTSLSFASKEEAIEYATRYGYKYTVFEPEHSKENLRKFSAYGKSMVHQWRHK-IPVFDSDSSK 146          
BLAST of Ggra4849.t1 vs. uniprot
Match: A0A7S0G1Y0 (NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial (Fragment) n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0G1Y0_9RHOD)

HSP 1 Score: 113 bits (283), Expect = 5.070e-29
Identity = 53/103 (51.46%), Postives = 72/103 (69.90%), Query Frame = 0
Query:   27 NSDQTINVLSGIPEKHAARRVRIYRPAKVATQQGRGSLTQMWKMSFEKLEGG-DRWTNPLMGWTSTGDPLSNMGMSFPSKKAAIDYAERNGYEFNVFEPAEEK 128
            N    I +LSG P++H +R VRIYRPA+ A QQG+ S    W + F K +G  DRWTNPLMGWTSTGDPL+N+ +SF +++AA+ YA RNG+ + + +   EK
Sbjct:   62 NPHNRIFMLSGAPDEHVSRHVRIYRPARSAMQQGKKSKNATWHLEFAKTDGDVDRWTNPLMGWTSTGDPLTNLNVSFRTQEAAVKYAIRNGFHYTIEDRLPEK 164          
The following BLAST results are available for this feature:
BLAST of Ggra4849.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IXI83.340e-9082.55NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
R7QMJ91.670e-7669.81NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
M2Y4803.090e-4953.85NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
A0A7S1TKT93.300e-4854.96NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
M1VJG64.890e-4861.34NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
A0A5J4YTN47.580e-4649.29NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
A0A7S3EMI83.650e-4548.72NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
A0A7J7IMA91.120e-4448.34NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
A0A7S1TN472.570e-3855.66NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
A0A7S0G1Y05.070e-2951.46NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006885NADH dehydrogenase ubiquinone Fe-S protein 4, mitochondrialPFAMPF04800ETC_C1_NDUFA4coord: 46..132
e-value: 4.4E-28
score: 97.4
IPR006885NADH dehydrogenase ubiquinone Fe-S protein 4, mitochondrialPANTHERPTHR12219NADH-UBIQUINONE OXIDOREDUCTASEcoord: 28..129
IPR038532NADH dehydrogenase ubiquinone Fe-S protein 4-like superfamilyGENE3D3.30.160.190atu1810 like domaincoord: 42..127
e-value: 7.6E-30
score: 104.5
NoneNo IPR availablePANTHERPTHR12219:SF8NADH DEHYDROGENASE [UBIQUINONE] IRON-SULFUR PROTEIN 4, MITOCHONDRIALcoord: 28..129

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000090_piloncontigtig00000090_pilon:280058..280705 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4849.t1Ggra4849.t1Gracilaria gracilis GNS1m malemRNAtig00000090_pilon 280058..280705 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra4849.t1 ID=Ggra4849.t1|Name=Ggra4849.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=160bp
MSASKWIGTVGTIGRLAPRTMRMMSTNSDQTINVLSGIPEKHAARRVRIY
RPAKVATQQGRGSLTQMWKMSFEKLEGGDRWTNPLMGWTSTGDPLSNMGM
SFPSKKAAIDYAERNGYEFNVFEPAEEKQHVKPIAPFKRSMVHHWRHSGT
PVYDGDTSK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006885NADH_UbQ_FeS_4_mit
IPR038532NDUFS4-like_sf