Ggra4846.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra4846.t1
Unique NameGgra4846.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length314
Homology
BLAST of Ggra4846.t1 vs. uniprot
Match: A0A2V3IXH8 (Cyclin-U4-1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IXH8_9FLOR)

HSP 1 Score: 361 bits (927), Expect = 4.030e-122
Identity = 196/294 (66.67%), Postives = 236/294 (80.27%), Query Frame = 0
Query:   19 NFTLITSRSALVSILAATIQAHVSVNDELPEPPFDEMTVFHALEAPSISVAEYVARVCKYAFCSEACLVAAYHYITRAIEKDPKLALTSLSVHRLFITAIVLASKYFDDLSYNLVYYSKVGGLPHKELSNLEMQMLHILDFRLNIPAAAFAEIEANLISGLKVMEANAAKPAVTDLVAQAREAMKDPEMHSVPFELLPGEQPSEVTSSTSCLPLKSTVPVSTVVPVVETSLSRNSSLASVPDEAIFAHS-HSKRLSFSQRTFGRQRSSKTHSRFSHSPMSPDSSYRRRARASLG 311
            NFTL+ SR ALV+IL+ATIQAHV+ ND+LPEP  D+MTVFHALEAP+ISV EYV R+ KYAFCS+ACLVAAYHY+TRAI  DPKLALTSLS+HR+FITA+VLA KY DDLSYNLVYYSKVGGLP+KEL+NLEMQMLHILDFRL+I    F E+E+NL+SGLKV+EANA+K  V +LV  A+  +   +   V +E  PGE+  + T S    P  ST         V+T+LSRNSSLASVPDEA++A + H +RLS+S + F RQRSSKT+SRFSHSP+SP+S+YRRRARASLG
Sbjct:   22 NFTLLASRQALVAILSATIQAHVAANDQLPEPALDQMTVFHALEAPAISVCEYVTRLSKYAFCSDACLVAAYHYMTRAIASDPKLALTSLSIHRMFITALVLACKYMDDLSYNLVYYSKVGGLPYKELANLEMQMLHILDFRLDISPNQFVELESNLVSGLKVLEANASKAVVLNLVDHAKSLLMQSDSRGVAYEPFPGEKLVDDTESPVSSPSSSTT-------CVDTALSRNSSLASVPDEALYAQAAHPRRLSYSHKNFARQRSSKTYSRFSHSPISPESAYRRRARASLG 308          
BLAST of Ggra4846.t1 vs. uniprot
Match: R7QMA3 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QMA3_CHOCR)

HSP 1 Score: 226 bits (577), Expect = 3.920e-69
Identity = 123/197 (62.44%), Postives = 151/197 (76.65%), Query Frame = 0
Query:   18 INFTLITSRSALVSILAATIQAHVSVNDELPEPPFDEMTVFHALEAPSISVAEYVARVCKYAFCSEACLVAAYHYITRAIEKDPKLALTSLSVHRLFITAIVLASKYFDDLSYNLVYYSKVGGLPHKELSNLEMQMLHILDFRLNIPAAAFAEIEANLISGLKVMEANAAKPAVTDLVAQAREAMKDPEMHSVPFEL 214
            + F+LITS  ALV+++ A IQA VSVND  P  PF++MTVFHA E P+ISVA+YVARV KYAFCS ACLVAA +YI  AI KDPKLAL+SLSVHRLFITA++LASKYFDD+SYNL YY+KVGGLP KEL+NLE+ +L +L+FRL+IPA  FA IE NL+  L V EA+     +T +V  AR  +   ++  VP EL
Sbjct:   14 VKFSLITSPPALVAVIIANIQAQVSVNDAKPPAPFEDMTVFHAQEPPAISVADYVARVSKYAFCSHACLVAASYYIDEAIRKDPKLALSSLSVHRLFITAVILASKYFDDVSYNLPYYAKVGGLPFKELANLEINLLSVLNFRLDIPAQKFAAIETNLVDQLDVFEAHPIDEELTRVVDVARYELWHADI--VPVEL 208          
BLAST of Ggra4846.t1 vs. uniprot
Match: D8SP78 (Uncharacterized protein (Fragment) n=3 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8SP78_SELML)

HSP 1 Score: 125 bits (313), Expect = 1.670e-31
Identity = 63/140 (45.00%), Postives = 93/140 (66.43%), Query Frame = 0
Query:   29 LVSILAATIQAHVSVNDELPEPPFDEMTVFHALEAPSISVAEYVARVCKYAFCSEACLVAAYHYITRAIEKDPKLALTSLSVHRLFITAIVLASKYFDDLSYNLVYYSKVGGLPHKELSNLEMQMLHILDFRLNIPAAAF 168
            ++S+LA+ ++  V+ N         ++TVFH L APSIS+ +Y+ R+ KYA CS AC V AY Y+ R I + P + +TSL+VHRL IT++++A+K+ DD  YN  YY+KVGG+   E++ LE+Q L  LDFRL +    F
Sbjct:    7 VISVLASLLERVVARNHRHLGGGATKLTVFHGLRAPSISIEKYLERIFKYANCSPACFVVAYAYMDRFIHQQPDVPITSLNVHRLLITSVMVAAKFLDDAYYNNAYYAKVGGVSTLEMNRLELQFLFRLDFRLQVTVTMF 146          
BLAST of Ggra4846.t1 vs. uniprot
Match: A0A388M0G0 (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388M0G0_CHABU)

HSP 1 Score: 126 bits (317), Expect = 3.240e-30
Identity = 64/145 (44.14%), Postives = 95/145 (65.52%), Query Frame = 0
Query:   33 LAATIQAHVSVNDELP--EPPFDEMTVFHALEAPSISVAEYVARVCKYAFCSEACLVAAYHYITRAIEKDPKLALTSLSVHRLFITAIVLASKYFDDLSYNLVYYSKVGGLPHKELSNLEMQMLHILDFRLNIPAAAFAEIEANL 175
            L A  + HV      P   P   ++TVFH L APSI++ +Y+ R+ KYA CS AC V AY YI R I++ P+L +TSL+VHRL +TA+++A+K+ DD+ +N  YY+KVGG+   E++ LE++ L  LDFRL++    F    ++L
Sbjct:   54 LVARNERHVMTTATTPYASPCRGKLTVFHGLRAPSITIDKYLERIFKYANCSPACFVVAYVYIDRLIQRQPELPITSLNVHRLLVTAVMVAAKFLDDVYFNNGYYAKVGGVTTAEMNRLELEFLFRLDFRLHVTTGVFEHYSSHL 198          
BLAST of Ggra4846.t1 vs. uniprot
Match: D8R719 (Uncharacterized protein (Fragment) n=4 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8R719_SELML)

HSP 1 Score: 121 bits (303), Expect = 3.450e-30
Identity = 56/114 (49.12%), Postives = 83/114 (72.81%), Query Frame = 0
Query:   55 MTVFHALEAPSISVAEYVARVCKYAFCSEACLVAAYHYITRAIEKDPKLALTSLSVHRLFITAIVLASKYFDDLSYNLVYYSKVGGLPHKELSNLEMQMLHILDFRLNIPAAAF 168
            +TVFH L APSIS+ +Y+ R+ KYA CS +C V AY YI R I++ P L +TSL+VHRL +T++++A+K+ DD  YN  YY+KVGG+  +E++ LE++ L  L+FRL +  + F
Sbjct:   32 LTVFHGLRAPSISIDKYLERIFKYANCSPSCFVVAYVYIDRFIQQKPSLPITSLNVHRLLVTSVMVAAKFLDDAYYNNAYYAKVGGVNTQEMNRLELEFLFHLNFRLQVTVSVF 145          
BLAST of Ggra4846.t1 vs. uniprot
Match: A0A1J3HMZ0 (Cyclin-U4-2 (Fragment) n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3HMZ0_NOCCA)

HSP 1 Score: 117 bits (292), Expect = 1.660e-28
Identity = 57/143 (39.86%), Postives = 97/143 (67.83%), Query Frame = 0
Query:   29 LVSILAATIQAHVSVNDELPEPPFDE---MTVFHALEAPSISVAEYVARVCKYAFCSEACLVAAYHYITRAIEKDPKLALTSLSVHRLFITAIVLASKYFDDLSYNLVYYSKVGGLPHKELSNLEMQMLHILDFRLNIPAAAF 168
            +++ +++ +Q     ND+L  P F E   M+ F+AL  PSIS+  Y+AR+ KYA CS++C + AY Y+ R I+K P L + S +VHRL IT++++++K+ DDL YN  YY+K+GG+  +E++ LE+  L  + F+LN+ ++ +
Sbjct:   20 VITAMSSLLQRVSETNDDLSRP-FREHQMMSAFNALTKPSISIRSYMARIFKYASCSDSCYIVAYIYLERFIQKQPFLPIDSFNVHRLIITSVLVSAKFMDDLCYNNAYYAKIGGITTEEMNLLELDFLFGIGFQLNVTSSTY 161          
BLAST of Ggra4846.t1 vs. uniprot
Match: A0A2R6W0P2 (Uncharacterized protein n=1 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6W0P2_MARPO)

HSP 1 Score: 120 bits (301), Expect = 1.830e-28
Identity = 58/119 (48.74%), Postives = 83/119 (69.75%), Query Frame = 0
Query:   50 PPFDEMTVFHALEAPSISVAEYVARVCKYAFCSEACLVAAYHYITRAIEKDPKLALTSLSVHRLFITAIVLASKYFDDLSYNLVYYSKVGGLPHKELSNLEMQMLHILDFRLNIPAAAF 168
            PP  ++TVFH L AP+IS+ +Y+ R+ KYA CS +C V AY YI R I + P + +TSL+VHRL IT++++A+K+ DD  YN  YY+KVGG+   E++ LE+  L  LDFRL +  + F
Sbjct:  117 PP--KLTVFHGLRAPTISIEKYLERIFKYANCSPSCFVVAYAYIDRFIHQQPGIPITSLNVHRLLITSVMVAAKFLDDAYYNNAYYAKVGGVTTLEMNRLELDFLFRLDFRLQVTVSVF 233          
BLAST of Ggra4846.t1 vs. uniprot
Match: A0A2K3MTC3 (Cyclin-p3-1-like protein n=3 Tax=Trifolium TaxID=3898 RepID=A0A2K3MTC3_TRIPR)

HSP 1 Score: 117 bits (294), Expect = 3.610e-28
Identity = 63/142 (44.37%), Postives = 94/142 (66.20%), Query Frame = 0
Query:   29 LVSILAATIQAHVSVNDELPEPPF--DEMTVFHALEAPSISVAEYVARVCKYAFCSEACLVAAYHYITRAIEKDPKLALTSLSVHRLFITAIVLASKYFDDLSYNLVYYSKVGGLPHKELSNLEMQMLHILDFRLNIPAAAF 168
            ++S+L++ ++  V  N+ L E     D +TVFH L AP++SV +Y+ R+CKY+ CS +C V A+ YI R +    ++ LTSL+VHRL IT+I+LA+K+ DD  +N  YY+KVGG+   EL+ LEM  L  +DFRL +    F
Sbjct:   32 VLSLLSSLLERSVQKNEMLLETKHIEDVVTVFHGLRAPTLSVHKYIDRICKYSGCSPSCFVVAHIYIDRFLH-HTEIKLTSLNVHRLLITSIMLAAKFMDDAFFNNAYYAKVGGVSTSELNRLEMSFLFGIDFRLQVSVDTF 172          
BLAST of Ggra4846.t1 vs. uniprot
Match: A0A176W9U7 (Uncharacterized protein n=1 Tax=Marchantia polymorpha subsp. ruderalis TaxID=1480154 RepID=A0A176W9U7_MARPO)

HSP 1 Score: 120 bits (301), Expect = 4.130e-28
Identity = 58/119 (48.74%), Postives = 83/119 (69.75%), Query Frame = 0
Query:   50 PPFDEMTVFHALEAPSISVAEYVARVCKYAFCSEACLVAAYHYITRAIEKDPKLALTSLSVHRLFITAIVLASKYFDDLSYNLVYYSKVGGLPHKELSNLEMQMLHILDFRLNIPAAAF 168
            PP  ++TVFH L AP+IS+ +Y+ R+ KYA CS +C V AY YI R I + P + +TSL+VHRL IT++++A+K+ DD  YN  YY+KVGG+   E++ LE+  L  LDFRL +  + F
Sbjct:   77 PP--KLTVFHGLRAPTISIEKYLERIFKYANCSPSCFVVAYAYIDRFIHQQPGIPITSLNVHRLLITSVMVAAKFLDDAYYNNAYYAKVGGVTTLEMNRLELDFLFRLDFRLQVTVSVF 193          
BLAST of Ggra4846.t1 vs. uniprot
Match: A0A4Y7J5V7 (Cyclin n=2 Tax=Papaver somniferum TaxID=3469 RepID=A0A4Y7J5V7_PAPSO)

HSP 1 Score: 116 bits (291), Expect = 4.780e-28
Identity = 61/142 (42.96%), Postives = 94/142 (66.20%), Query Frame = 0
Query:   29 LVSILAATIQAHVSVNDELPEPP--FDEMTVFHALEAPSISVAEYVARVCKYAFCSEACLVAAYHYITRAIEKDPKLALTSLSVHRLFITAIVLASKYFDDLSYNLVYYSKVGGLPHKELSNLEMQMLHILDFRLNIPAAAF 168
            ++S L+  +   V  N+++ E     D +T+FHA+ APS+S+ +Y+ R+ KYA CS +C V AY YI R +E    + +TSL+VHRLFIT++++A+K+ DDL YN  YY+KVGG+   E++ +E+  L  LDFRL +    F
Sbjct:   35 VISALSLILGRVVRNNEKIMETTKMMDTITIFHAVRAPSLSIQQYINRIFKYASCSPSCFVIAYIYIDRFLE-CADVHVTSLNVHRLFITSVMIAAKFIDDLFYNNAYYAKVGGVSTAEMNKMEISFLFSLDFRLQVTERTF 175          
The following BLAST results are available for this feature:
BLAST of Ggra4846.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IXH84.030e-12266.67Cyclin-U4-1 n=1 Tax=Gracilariopsis chorda TaxID=44... [more]
R7QMA33.920e-6962.44Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
D8SP781.670e-3145.00Uncharacterized protein (Fragment) n=3 Tax=Selagin... [more]
A0A388M0G03.240e-3044.14Uncharacterized protein n=1 Tax=Chara braunii TaxI... [more]
D8R7193.450e-3049.12Uncharacterized protein (Fragment) n=4 Tax=Selagin... [more]
A0A1J3HMZ01.660e-2839.86Cyclin-U4-2 (Fragment) n=1 Tax=Noccaea caerulescen... [more]
A0A2R6W0P21.830e-2848.74Uncharacterized protein n=1 Tax=Marchantia polymor... [more]
A0A2K3MTC33.610e-2844.37Cyclin-p3-1-like protein n=3 Tax=Trifolium TaxID=3... [more]
A0A176W9U74.130e-2848.74Uncharacterized protein n=1 Tax=Marchantia polymor... [more]
A0A4Y7J5V74.780e-2842.96Cyclin n=2 Tax=Papaver somniferum TaxID=3469 RepID... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.472.10coord: 16..210
e-value: 1.6E-44
score: 154.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 274..313
IPR013922Cyclin PHO80-likePFAMPF08613Cyclincoord: 55..161
e-value: 1.9E-26
score: 93.4
IPR013922Cyclin PHO80-likePANTHERPTHR15615UNCHARACTERIZEDcoord: 27..276
IPR036915Cyclin-like superfamilySUPERFAMILY47954Cyclin-likecoord: 68..162

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000090_piloncontigtig00000090_pilon:267314..268255 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4846.t1Ggra4846.t1Gracilaria gracilis GNS1m malemRNAtig00000090_pilon 267314..268255 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra4846.t1 ID=Ggra4846.t1|Name=Ggra4846.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=314bp
MTAQSPSAVESTAAVSPINFTLITSRSALVSILAATIQAHVSVNDELPEP
PFDEMTVFHALEAPSISVAEYVARVCKYAFCSEACLVAAYHYITRAIEKD
PKLALTSLSVHRLFITAIVLASKYFDDLSYNLVYYSKVGGLPHKELSNLE
MQMLHILDFRLNIPAAAFAEIEANLISGLKVMEANAAKPAVTDLVAQARE
AMKDPEMHSVPFELLPGEQPSEVTSSTSCLPLKSTVPVSTVVPVVETSLS
RNSSLASVPDEAIFAHSHSKRLSFSQRTFGRQRSSKTHSRFSHSPMSPDS
SYRRRARASLGVK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013922Cyclin_PHO80-like
IPR036915Cyclin-like_sf