Ggra4815.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra4815.t1
Unique NameGgra4815.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length621
Homology
BLAST of Ggra4815.t1 vs. uniprot
Match: A0A2V3J3L9 (Protein PIN-LIKES 3 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J3L9_9FLOR)

HSP 1 Score: 407 bits (1047), Expect = 3.320e-134
Identity = 226/385 (58.70%), Postives = 289/385 (75.06%), Query Frame = 0
Query:    4 SSSNILGSSVSGSIELLTLCAAGAYLVYTEILDRRLTRRLSKATKDMFIPCLVFGSILHTARSAIDTLLSGDDSFSALQQIWVPVVLAFLVLGISATCAIPITRIIAYDKQEAVRRAIFVCLTLGNANVLPLLVMQSLCDTFPPLMQVPQCYEKSMGYASLFLTIINIISWMTLYQYLRAAPDNTVDTPGAEEAPLLNA--------HCI---EEADGIQEAVSRSLKSPIFISMIAAVFLAFVYPVANALLNHDGVLRPVMLSINILGNVVVPINAIVVGAEFYHCL--AEEDDRSYDYQEDEMFGNRVFAAILLWRLIVLPALARFLYSWLGLASQVHNHLLAVFGLIEFNNPTANTTVMMMALVRNRLNRAGKQLGRDVVRT 375
            SSS IL SS+SGS+ELLTLCAAGA LV+T++ D  +T +LS+A K++FIP LVFGSILHTA SAI+TL++  DS  ALQQIWVPV LAFLV G++A  A PIT++IA  KQ+AV+RA+F CL LGNANV+PLLVMQSLCDTFPPLM+ P CY+KSMGYASLFLT+INIISW  LYQ+LR + D+  D    EEAPLL+         H +   E    I +A+ R L S IF++++AA+ +A VYP+ NA L+ DGVLRP +LSINILGNVVVP+N+++VGAE Y+ L    ++DR   Y+++E FG+  F  IL WRL+  P +AR LY  LGL S++ + LL +FGL+EFNNPTANTTVM++++V  RL R G QL  DV +T
Sbjct:    3 SSSRILQSSLSGSVELLTLCAAGALLVHTQVFDADVTTQLSRAMKNLFIPALVFGSILHTAHSAIETLITSRDSI-ALQQIWVPVALAFLVFGMAAIFAYPITKLIASGKQQAVQRAVFACLVLGNANVMPLLVMQSLCDTFPPLMRTPHCYDKSMGYASLFLTVINIISWTVLYQFLRDSKDS--DHFREEEAPLLSQTGFRSSINHPMDLDEPRAPIIDAIKRVLCSHIFLAVVAALAIAIVYPLGNAFLDDDGVLRPFLLSINILGNVVVPVNSLIVGAELYNSLYGCRDEDRYIKYKDEE-FGSSTFLVILFWRLVAFPWIARILYVLLGLDSKLGDPLLGIFGLVEFNNPTANTTVMLISVVSTRLPRIGDQLRYDVAKT 383          
BLAST of Ggra4815.t1 vs. uniprot
Match: A0A2V3ISQ9 (Protein PIN-LIKES 3 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ISQ9_9FLOR)

HSP 1 Score: 340 bits (871), Expect = 1.060e-107
Identity = 185/385 (48.05%), Postives = 259/385 (67.27%), Query Frame = 0
Query:    3 SSSSNILGSSVSGSIELLTLCAAGAYLVYTEILDRRLTRRLSKATKDMFIPCLVFGSILHTARSAIDTLLSGDDSFSALQQIWVPVVLAFLVLGISATCAIPITRIIAYDKQEAVRRAIFVCLTLGNANVLPLLVMQSLCDTFPPLMQVPQCYEKSMGYASLFLTIINIISWMTLYQYLRAAPDNTVDTPGAEEA------------PLLNAHC-IEEADGIQEAVSRSLKSPIFISMIAAVFLAFVYPVANALLNHDGVLRPVMLSINILGNVVVPINAIVVGAEFYHCLAE--EDDRSYDYQEDEMFGNRVFAAILLWRLIVLPALARFLYSWLGLASQVHNHLLAVFGLIEFNNPTANTTVMMMALVRNRLNRAGKQLGRDV 372
            S+++ ILGSS+ GS+ELLTL + GA LV+  +  + +T  LS+A   +FIP LVFGSIL T  SA+ ++   +   SALQ+IWVPVVLA ++  I+A  A P+TR+IA  KQEAV+RAIF CL LGNAN +PLLVMQSLCDTF PL Q  QCY KSMGYASLFLT++NI+SW  L+QYL  APD+++     E A            PL +    +   D ++EA+ R+L SP FI++++++  A +  + +A L+  G+LRP +LSINI+G +VVP++ ++VG+E Y  LA   ED+     +  E FG + F  IL  R+++LP +AR +Y     + +VHNHLL +FGL+EFN PTAN TV+M+++    L R G+QL +DV
Sbjct:    2 STAAQILGSSIGGSVELLTLSSVGALLVHIGVFQQAVTSALSRAVYLIFIPALVFGSILETTHSALKSVRETNGDPSALQEIWVPVVLALIIYVITAIIAFPVTRLIARSKQEAVKRAIFACLILGNANTMPLLVMQSLCDTFLPLQQGGQCYPKSMGYASLFLTVVNIVSWTALFQYLMYAPDSSLAASDEEHALLQPRPAPQHIRPLDHEDVDVSRPDPVKEAIMRALVSPPFIAVVSSMTCAIIPGLGDAFLHEQGLLRPFLLSINIVGGIVVPVSCMIVGSELYRSLASSSEDEELVKRRPQEQFGTQTFVVILFVRMVLLPLVAREIYRAFNFSERVHNHLLGIFGLVEFNVPTANNTVIMISIAAESLPRIGRQLRQDV 386          
BLAST of Ggra4815.t1 vs. uniprot
Match: A0A1X6NVP0 (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NVP0_PORUM)

HSP 1 Score: 65.9 bits (159), Expect = 6.390e-8
Identity = 56/232 (24.14%), Postives = 99/232 (42.67%), Query Frame = 0
Query:   43 LSKATKDMFIPCLVFGSILHTARSAIDTLLSGDDSFSALQQIWVPVVLAFLVLGISATCAIPITRIIAYDKQEAVRRAIFVCLTLGNANVLPLLVMQSLCDTFPPLMQVPQCYEKSMGYASLFLTIINIISWMTLYQYLRAAPDNTVDTP----------GAEEAPLLNAHCIEEADGIQEAVSRSLKS---PIFISMIAAVFLAFVYPVANALLNHDGVLRPVMLSINILG 261
            +S+    +F+PCL+F SI+ T  +A  + ++           W  V+L    +  +A       R ++       RRA  V    GN+  LP+L+  S+CD + PL+    C  ++ GY SL+L + +   W    +YL  A  +               G      L   C+     +  AV  +L S   P F++++AA+  + +      L+    VL  + L++ +LG
Sbjct:    1 MSRMIVSLFLPCLLFISIVETLYAAAQSPVTSTTPVLLAMPAWAIVIL----IECAAVGTWVSRRWLSPTLSRPDRRACVVACVFGNSGQLPILLAGSVCDNYGPLVGDAGCKARATGYCSLYLLVWSSTLWTLGNRYLAGAAGDGXXXXXXXXXXXGPWGPPRGRWLLGACLAALPALPAAVRSTLGSLLTPPFLAIVAALCFSTIPGAGALLVGRSSVLHSLALTMELLG 228          
BLAST of Ggra4815.t1 vs. uniprot
Match: aminoglycoside phosphotransferase family protein n=1 Tax=Vibrio sp. Of7-15 TaxID=2724879 RepID=UPI001EF3AA4E (aminoglycoside phosphotransferase family protein n=1 Tax=Vibrio sp. Of7-15 TaxID=2724879 RepID=UPI001EF3AA4E)

HSP 1 Score: 62.4 bits (150), Expect = 7.570e-7
Identity = 50/148 (33.78%), Postives = 71/148 (47.97%), Query Frame = 0
Query:  460 EDKRLGLCHLKRNQPLVDS--------AIQQWTAIQRESVQHIEKLRHLGVPVCDISWYEDGLREVSTYGKREDPDSISTLGQ-----EQRFLETVSVLREQA---GIPHTLVHGDLHDENVARNEENPDGFIFNDSDYLCITHPFLD 591
            E +R  L      +PL +S        A Q+W A+QR SV H++KL   G     IS     L ++  Y   E P   S L       E+R  E + V  EQ     +P  LVHGDLH+ N+A+N  +   ++F D    CI+HPF++
Sbjct:   93 EKERCWLLTCDFGEPLDESVDLTVWSDAYQRWGALQRVSVDHVDKLGQSGCQSRAISTL---LEQLHWY--LEQPTIASLLSSNGKRWERRLSEKLEVAIEQLTEFALPDCLVHGDLHEGNMAKNANS---YLFFDWSDACISHPFME 232          
BLAST of Ggra4815.t1 vs. uniprot
Match: R7Q9W5 (APH domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q9W5_CHOCR)

HSP 1 Score: 61.6 bits (148), Expect = 3.680e-6
Identity = 40/113 (35.40%), Postives = 55/113 (48.67%), Query Frame = 0
Query:  486 IQRESVQHIEKLRHLGVPVCDISWYEDGLREV---STYGKREDPDSISTLGQEQRFLETVSVLREQAGIPHTLVHGDLHDENVARNEENPDGFIFNDSDYLCITHPFLDVGAT 595
            + + SV H+E L+H GVPV    W    ++E+   S   +  D  S++ L      LE+        GIPHTL+HGDLH  N+    +N    IF D +   I HPF D   T
Sbjct:  628 VHKRSVPHLEVLKHAGVPVYTAKWLLSNVKEILGCSLVIESGDNVSVAKLRANVPRLESCLKELSSYGIPHTLLHGDLHSLNIGDAVDNSFHHIF-DWNSAYIGHPFSDFVVT 739          
BLAST of Ggra4815.t1 vs. uniprot
Match: A0A3B6Y0R1 (APH domain-containing protein n=3 Tax=Pseudoalteromonas TaxID=53246 RepID=A0A3B6Y0R1_PSEO7)

HSP 1 Score: 59.3 bits (142), Expect = 7.840e-6
Identity = 40/122 (32.79%), Postives = 65/122 (53.28%), Query Frame = 0
Query:  477 DSAIQQWTAIQRESVQHIEKLRHLGVPVCDISWYEDGLREVSTYGKREDPDSIST---LGQEQRFLETVSV----LREQAGIPHTLVHGDLHDENVARNEENPDGFIFNDSDYLCITHPFLD 591
            + A Q W  IQ  SV+H++KLR  G   C     E+   ++  +  + +  +I T   +  +  FL  + +    L+E + +P  LVHGDLH+ N+AR  E+   ++F D    C+THPF+D
Sbjct:  118 NDAYQVWGEIQSLSVEHVDKLRQSG---CQSRSIENLSTQLIWHFNQPEIAAILTDRNIVFDNNFLSNLEIAIHKLKEYS-LPDCLVHGDLHESNMARTAES---YLFFDWSDACVTHPFMD 232          
The following BLAST results are available for this feature:
BLAST of Ggra4815.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A2V3J3L93.320e-13458.70Protein PIN-LIKES 3 n=1 Tax=Gracilariopsis chorda ... [more]
A0A2V3ISQ91.060e-10748.05Protein PIN-LIKES 3 n=1 Tax=Gracilariopsis chorda ... [more]
A0A1X6NVP06.390e-824.14Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
aminoglycoside phosphotransferase family protein n=1 Tax=Vibrio sp. Of7-15 TaxID=2724879 RepID=UPI001EF3AA4E7.570e-733.78aminoglycoside phosphotransferase family protein n... [more]
R7Q9W53.680e-635.40APH domain-containing protein n=1 Tax=Chondrus cri... [more]
A0A3B6Y0R17.840e-632.79APH domain-containing protein n=3 Tax=Pseudoaltero... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 397..417
NoneNo IPR availablePANTHERPTHR31651:SF31AUXIN EFFLUX CARRIERcoord: 13..364
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..11
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 73..83
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 223..244
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 256..280
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 245..255
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 281..299
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 32..50
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 332..357
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 161..181
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 12..31
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 300..320
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 84..108
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 51..72
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 109..119
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 120..141
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 142..160
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 321..331
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 358..620
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 182..222
NoneNo IPR availableTMHMMTMhelixcoord: 159..181
NoneNo IPR availableTMHMMTMhelixcoord: 222..244
NoneNo IPR availableTMHMMTMhelixcoord: 259..281
NoneNo IPR availableTMHMMTMhelixcoord: 10..32
NoneNo IPR availableTMHMMTMhelixcoord: 304..326
NoneNo IPR availableTMHMMTMhelixcoord: 117..139
NoneNo IPR availableTMHMMTMhelixcoord: 51..68
NoneNo IPR availableTMHMMTMhelixcoord: 83..105
IPR004776Membrane transport proteinPFAMPF03547Mem_transcoord: 17..182
e-value: 1.5E-11
score: 43.3
IPR045033Protein PIN-LIKES 1/3/4/5/7PANTHERPTHR31651FAMILY NOT NAMEDcoord: 13..364

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000090_piloncontigtig00000090_pilon:93759..98090 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4815.t1Ggra4815.t1Gracilaria gracilis GNS1m malemRNAtig00000090_pilon 93759..98090 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra4815.t1 ID=Ggra4815.t1|Name=Ggra4815.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=621bp
MSSSSSNILGSSVSGSIELLTLCAAGAYLVYTEILDRRLTRRLSKATKDM
FIPCLVFGSILHTARSAIDTLLSGDDSFSALQQIWVPVVLAFLVLGISAT
CAIPITRIIAYDKQEAVRRAIFVCLTLGNANVLPLLVMQSLCDTFPPLMQ
VPQCYEKSMGYASLFLTIINIISWMTLYQYLRAAPDNTVDTPGAEEAPLL
NAHCIEEADGIQEAVSRSLKSPIFISMIAAVFLAFVYPVANALLNHDGVL
RPVMLSINILGNVVVPINAIVVGAEFYHCLAEEDDRSYDYQEDEMFGNRV
FAAILLWRLIVLPALARFLYSWLGLASQVHNHLLAVFGLIEFNNPTANTT
VMMMALVRNRLNRAGKQLGRDVVRTYVKASDSCRSSAPVRLSQRNRNEKL
RRVQRELKRRLNRALANAPQHPWSFTSQSSQMEATISSCDLNRPQMRDQY
LSLTLCFSEEDKRLGLCHLKRNQPLVDSAIQQWTAIQRESVQHIEKLRHL
GVPVCDISWYEDGLREVSTYGKREDPDSISTLGQEQRFLETVSVLREQAG
IPHTLVHGDLHDENVARNEENPDGFIFNDSDYLCITHPFLDVGATSLVKR
SRKMRLTADVGKTTAMMKCC*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004776Mem_trans
IPR045033PILS1/3/4/5/7