Ggra4626.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra4626.t1
Unique NameGgra4626.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length154
Homology
BLAST of Ggra4626.t1 vs. uniprot
Match: A0A2V3IPT1 (Cytochrome c oxidase subunit 5b-1, mitochondrial n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IPT1_9FLOR)

HSP 1 Score: 228 bits (582), Expect = 1.180e-74
Identity = 112/153 (73.20%), Postives = 125/153 (81.70%), Query Frame = 0
Query:    1 MIAPAASRTVRHSSLIGALVRASSRSLAPHTRVLPAVSQLVARRYAAKSDGPSLVADVKPGTPGEIPSIIDQATGLERAEIDHPDLFKHNEVLRGPFGTYDNPVKIQSAYDSRIVGCTGKATPDDHDLVWLLVEKGEKCECKECGQVFELDPL 153
            MIA AA    R SS++ +L R S      H R+L   S    R YAAKSDGPS+VA+VKPGTPGEIPSI+DQATGLERAEIDHPDLFKHNE+L+GPFGT ++PVKIQSAYD+RIVGCTGKA PDDHDLVWLLVEKGE+  CKECGQVFELDPL
Sbjct:    1 MIAAAARSAARSSSVLASLARLSRSPSTLHPRLLSIPSSHSVRHYAAKSDGPSVVAEVKPGTPGEIPSIMDQATGLERAEIDHPDLFKHNEILKGPFGTAEHPVKIQSAYDARIVGCTGKAAPDDHDLVWLLVEKGEQAVCKECGQVFELDPL 153          
BLAST of Ggra4626.t1 vs. uniprot
Match: A0A1X6PEZ9 (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PEZ9_PORUM)

HSP 1 Score: 134 bits (337), Expect = 3.130e-37
Identity = 76/165 (46.06%), Postives = 96/165 (58.18%), Query Frame = 0
Query:    6 ASRTVRHSSLIGALVRASSR---SLAPHTRV--LPAVSQLVARRYAAKSDGPSLVADVKPGTPG------------EIPSIIDQATGLERAEIDHPDLFKHNEVLRGPFGTYDNPVKIQSAYDSRIVGCTGKATPDDHDLVWLLVEKGEKCECKECGQVFELDPL 153
            A+R +R ++ + +L RA  R   +L P   V    A ++ +A      + G S  A  KP +               +P   DQA GLERAEID+PD+F HNEV RGPFGT  +P  I+SA+D RIVGCTG+A P DHDL WL V+KGE C C  CGQVF L PL
Sbjct:    3 ANRALRAAAALRSLSRAVPRQPVALGPAAYVGSAGAAARFMAATATTTAPGTSKTAVAKPRSDAVAKPPAADADADTVPDSFDQAAGLERAEIDYPDIFAHNEVSRGPFGTKSSPALIESAFDERIVGCTGEAAPADHDLHWLTVKKGELCTCPVCGQVFALSPL 167          
BLAST of Ggra4626.t1 vs. uniprot
Match: A0A1X6PF12 (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PF12_PORUM)

HSP 1 Score: 132 bits (331), Expect = 2.760e-36
Identity = 58/88 (65.91%), Postives = 67/88 (76.14%), Query Frame = 0
Query:   66 IPSIIDQATGLERAEIDHPDLFKHNEVLRGPFGTYDNPVKIQSAYDSRIVGCTGKATPDDHDLVWLLVEKGEKCECKECGQVFELDPL 153
            +P   DQA GLERAE+D+PD+F HNEV RGPFGT  +P  I+SA+D RIVGCTG+A P DHDL WL V+KGE C C  CGQVF L PL
Sbjct:   83 VPDSFDQAAGLERAEVDYPDIFAHNEVSRGPFGTKSSPALIESAFDERIVGCTGEAAPADHDLHWLTVKKGELCTCPVCGQVFALSPL 170          
BLAST of Ggra4626.t1 vs. uniprot
Match: A0A7J7IKE5 (Uncharacterized protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IKE5_9RHOD)

HSP 1 Score: 128 bits (321), Expect = 1.090e-35
Identity = 57/95 (60.00%), Postives = 70/95 (73.68%), Query Frame = 0
Query:   58 VKPGTPGEIPSIIDQATGLERAEIDHPDLFKHNEVLRGPFGTYDNPVKIQSAYDSRIVGCTGKATPDDHDLVWLLVEKGEKCECKECGQVFELDP 152
            V+   PG +P+  DQATG+ER E++HPD+FKHNEV+RGPFGT D PV ++SAY+SRIVGCTG A P+DHDL W+ V K     C  C QVF L P
Sbjct:    3 VRGTPPGVMPTAEDQATGIERLELEHPDIFKHNEVIRGPFGTSDAPVLVESAYESRIVGCTGAAAPNDHDLYWIEVRKDHPAVCPLCEQVFALKP 97          
BLAST of Ggra4626.t1 vs. uniprot
Match: A0A5J4YMW7 (Cytochrome c oxidase subunit 5b-2, mitochondrial n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YMW7_PORPP)

HSP 1 Score: 123 bits (308), Expect = 8.730e-33
Identity = 51/97 (52.58%), Postives = 72/97 (74.23%), Query Frame = 0
Query:   57 DVKPGTPGEIPSIIDQATGLERAEIDHPDLFKHNEVLRGPFGTYDNPVKIQSAYDSRIVGCTGKATPDDHDLVWLLVEKGEKCECKECGQVFELDPL 153
            D+KP  PG++P  + QA GLE+AEI++P +F HN+++ GPFGT + P  ++SA+DSRIVGCTG   P DHD++W+LVE G++  C  C QVFEL  +
Sbjct:   76 DIKPTPPGQVPDSMTQAAGLEKAEIENPKMFAHNDMIVGPFGTTEEPTYVESAFDSRIVGCTGDEAPHDHDILWILVEAGKQACCPLCEQVFELKQI 172          
BLAST of Ggra4626.t1 vs. uniprot
Match: A0A7S1TAF1 (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TAF1_9RHOD)

HSP 1 Score: 119 bits (297), Expect = 5.110e-31
Identity = 54/94 (57.45%), Postives = 64/94 (68.09%), Query Frame = 0
Query:   60 PGTPGEIPSIIDQATGLERAEIDHPDLFKHNEVLRGPFGTYDNPVKIQSAYDSRIVGCTGKATPDDHDLVWLLVEKGEKCECKECGQVFELDPL 153
            P  PG  P    Q+TGLERAEI+ PD+F+HNEVL+ PFGT   P  ++SA+DSRIVGCTG A P DHDL WL V+ GE   C  C QVF L  +
Sbjct:   88 PAPPGSTPDSFGQSTGLERAEIEIPDIFQHNEVLKAPFGTEAEPCLVESAFDSRIVGCTGDAAPHDHDLYWLEVKSGESSTCPLCEQVFALKQI 181          
BLAST of Ggra4626.t1 vs. uniprot
Match: M2XJ27 (Cytochrome c oxidase subunit Vb n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XJ27_GALSU)

HSP 1 Score: 101 bits (251), Expect = 7.890e-24
Identity = 47/99 (47.47%), Postives = 66/99 (66.67%), Query Frame = 0
Query:   58 VKPGTPGEIPSIIDQATGLERAEIDHPDLFKHNE------VLRGPFGTYDNPVKIQSAYDSRIVGCTGKATPDDHDLVWLLVEKGEKCECKECGQVFEL 150
            +K GTP  +PS  DQATG ERAE++ PDL+++ E      V+  PFGT + P+ I S YDSRI+GCTG+  P+DH++ ++ V++     C  CGQVF L
Sbjct:   94 LKTGTPDRMPSSFDQATGSERAELEDPDLYRNPEKYVNSRVMIAPFGTKEKPLLIPSRYDSRIIGCTGREAPNDHEVYYMTVKENHDKVCPLCGQVFRL 192          
BLAST of Ggra4626.t1 vs. uniprot
Match: A0A7S0BD73 (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BD73_9RHOD)

HSP 1 Score: 82.8 bits (203), Expect = 1.750e-16
Identity = 42/92 (45.65%), Postives = 55/92 (59.78%), Query Frame = 0
Query:   61 GTPGEIPSIIDQATGLERAEIDHPDLFKHN--EVLRGPFGTYDNPVKIQSAYDSRIVGCTGKATPDDHDLVWLLVEKGEKCECKECGQVFEL 150
            G   E  S +D + G ERA I+  D F     E L GPFGT + P  ++SAY+ RIVGCTG   P+DH+++WL+  K E  EC  C Q F+L
Sbjct:   95 GPISETASSLDISVGSERAHIELGDHFNTTPPEGLFGPFGTLEAPYLVESAYEERIVGCTGLPYPEDHEVMWLICRKDEITECPYCTQCFQL 186          
BLAST of Ggra4626.t1 vs. uniprot
Match: A0A165TNA8 (COX5B, subunit VB of cytochrome c oxidase n=1 Tax=Daedalea quercina L-15889 TaxID=1314783 RepID=A0A165TNA8_9APHY)

HSP 1 Score: 80.9 bits (198), Expect = 1.930e-16
Identity = 40/95 (42.11%), Postives = 58/95 (61.05%), Query Frame = 0
Query:   61 GTPGEIPSIIDQATGLERAEI----DHPDLFKHNEVLRGPFGTYDNPVKIQSAYDSRIVGCTGKATPDDHDLVWLLVEKGEKCECKECGQVFELD 151
            G PGEIPS +DQATGL RA++    +   LF    +     GT  +P+K+ S   +RI+GCTG    + H+L+W+ + + +K  C ECG V+ELD
Sbjct:   47 GKPGEIPSDLDQATGLRRAQVLAEREGVKLFDEEPLDSSRIGTLADPIKVLSYEHNRIIGCTGSPA-ESHELLWMNLTEDKKRRCPECGSVYELD 140          
BLAST of Ggra4626.t1 vs. uniprot
Match: A0A397U5J5 (Cytochrome c oxidase n=1 Tax=Gigaspora rosea TaxID=44941 RepID=A0A397U5J5_9GLOM)

HSP 1 Score: 76.6 bits (187), Expect = 3.770e-15
Identity = 40/109 (36.70%), Postives = 68/109 (62.39%), Query Frame = 0
Query:   54 LVADVKPG------TPGEIPSIIDQATGLERAEI----DHPDLFKHNEVLRGPFGTYDNPVKIQSAYDSRIVGCTGKATPDDHDLVWLLVEKGEKCE-CKECGQVFELD 151
            +++DV P        PG +P+ +DQATGLERAE+    +  +LF+   +    +GT  +P++++S    R VGC+G    D H+L+WL+++K  + + C ECGQVF+++
Sbjct:    3 IISDVGPNFFGPGAKPGAVPTDVDQATGLERAELLAALEGKELFELKPLKITKYGTKKDPIRVKSVDPVRYVGCSGFPV-DSHELLWLVLDKNHEFDRCPECGQVFKMN 110          
The following BLAST results are available for this feature:
BLAST of Ggra4626.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IPT11.180e-7473.20Cytochrome c oxidase subunit 5b-1, mitochondrial n... [more]
A0A1X6PEZ93.130e-3746.06Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A1X6PF122.760e-3665.91Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A7J7IKE51.090e-3560.00Uncharacterized protein n=1 Tax=Cyanidiococcus yan... [more]
A0A5J4YMW78.730e-3352.58Cytochrome c oxidase subunit 5b-2, mitochondrial n... [more]
A0A7S1TAF15.110e-3157.45Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
M2XJ277.890e-2447.47Cytochrome c oxidase subunit Vb n=1 Tax=Galdieria ... [more]
A0A7S0BD731.750e-1645.65Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A165TNA81.930e-1642.11COX5B, subunit VB of cytochrome c oxidase n=1 Tax=... [more]
A0A397U5J53.770e-1536.70Cytochrome c oxidase n=1 Tax=Gigaspora rosea TaxID... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002124Cytochrome c oxidase, subunit VbPFAMPF01215COX5Bcoord: 60..152
e-value: 2.4E-20
score: 72.5
IPR002124Cytochrome c oxidase, subunit VbPANTHERPTHR10122CYTOCHROME C OXIDASE SUBUNIT 5B, MITOCHONDRIALcoord: 23..151
IPR002124Cytochrome c oxidase, subunit VbPROSITEPS51359COX5B_2coord: 61..153
score: 16.729446
IPR036972Cytochrome c oxidase, subunit Vb superfamilyGENE3D2.60.11.10Cytochrome c oxidase, subunit Vbcoord: 61..153
e-value: 1.2E-25
score: 91.1
NoneNo IPR availableSUPERFAMILY57802Rubredoxin-likecoord: 63..152

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000941_piloncontigtig00000941_pilon:165171..165632 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4626.t1Ggra4626.t1Gracilaria gracilis GNS1m malemRNAtig00000941_pilon 165171..165632 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra4626.t1 ID=Ggra4626.t1|Name=Ggra4626.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=154bp
MIAPAASRTVRHSSLIGALVRASSRSLAPHTRVLPAVSQLVARRYAAKSD
GPSLVADVKPGTPGEIPSIIDQATGLERAEIDHPDLFKHNEVLRGPFGTY
DNPVKIQSAYDSRIVGCTGKATPDDHDLVWLLVEKGEKCECKECGQVFEL
DPL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002124Cyt_c_oxidase_su5b
IPR036972Cyt_c_oxidase_su5b_sf