Ggra4595.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra4595.t1
Unique NameGgra4595.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length104
Homology
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BLAST of Ggra4595.t1 vs. uniprot
Match: A0A2V3IM76 (Nucleoid-associated protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IM76_9FLOR)

HSP 1 Score: 176 bits (447), Expect = 1.320e-55
Identity = 94/100 (94.00%), Postives = 97/100 (97.00%), Query Frame = 0 
Query:    4 SVSRNVFKKALSTAGRTLSSTRVEAEAGQGLVRATLAGDGRIVKLHVSSAIGKEGPKAIEELVAAAVNRAHDRLREETRKQVVQNLPPNVDAAMVLRALP 103
            S+SRNVFKKALSTAGR LSSTRVEAEAGQGLVRATLAGDGRIVKLHV SAIGKEGPKAIEELVAAAVNRAHDRLREETRKQV+Q+LPPNVD AMVLRALP
Sbjct:    8 SMSRNVFKKALSTAGRALSSTRVEAEAGQGLVRATLAGDGRIVKLHVDSAIGKEGPKAIEELVAAAVNRAHDRLREETRKQVLQSLPPNVDPAMVLRALP 107
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BLAST of Ggra4595.t1 vs. uniprot
Match: A0A7C5DNS8 (Nucleoid-associated protein ENL11_00360 n=1 Tax=Candidatus Acetothermia bacterium TaxID=2053493 RepID=A0A7C5DNS8_9BACT)

HSP 1 Score: 60.1 bits (144), Expect = 9.200e-10
Identity = 34/79 (43.04%), Postives = 51/79 (64.56%), Query Frame = 0 
Query:   19 RTLSSTRVEAEAGQGLVRATLAGDGRIVKLHVSSAIGKEGP-KAIEELVAAAVNRAHDRLREETRKQVVQ---NLPPNV 93
            R L+  RVEA+AG G+V+A ++G+G +V+LH+S  +  EG  + +E+LV AAV  A  R RE  RK++      LPP +
Sbjct:    8 RRLACARVEADAGGGIVKAVVSGEGELVELHISPEVVAEGDAEMLEDLVLAAVKEAQARARELARKEMSDLAGGLPPGM 86
The following BLAST results are available for this feature:
BLAST of Ggra4595.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IM761.320e-5594.00Nucleoid-associated protein n=1 Tax=Gracilariopsis... [more]
A0A7C5DNS89.200e-1043.04Nucleoid-associated protein ENL11_00360 n=1 Tax=Ca... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004401Nucleoid-associated protein YbaB/EbfC familyPFAMPF02575YbaB_DNA_bdcoord: 11..85
e-value: 1.7E-13
score: 50.6
IPR036894Nucleoid-associated protein YbaB-like domain superfamilyGENE3D3.30.1310.10coord: 6..95
e-value: 3.3E-15
score: 58.0
IPR036894Nucleoid-associated protein YbaB-like domain superfamilySUPERFAMILY82607YbaB-likecoord: 11..85

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000941_piloncontigtig00000941_pilon:69996..70307 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4595.t1Ggra4595.t1Gracilaria gracilis GNS1m malemRNAtig00000941_pilon 69996..70307 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra4595.t1 ID=Ggra4595.t1|Name=Ggra4595.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=104bp
MSASVSRNVFKKALSTAGRTLSSTRVEAEAGQGLVRATLAGDGRIVKLHV
SSAIGKEGPKAIEELVAAAVNRAHDRLREETRKQVVQNLPPNVDAAMVLR
ALP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004401YbaB/EbfC
IPR036894YbaB-like_sf