Ggra4583.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra4583.t1
Unique NameGgra4583.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length122
Homology
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BLAST of Ggra4583.t1 vs. uniprot
Match: A0A2V3INE7 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3INE7_9FLOR)

HSP 1 Score: 108 bits (270), Expect = 3.490e-28
Identity = 59/105 (56.19%), Postives = 81/105 (77.14%), Query Frame = 0 
Query:    1 MSSIQAGLQAIAQEPANQPIITRFLRFAGALAFFPLVAYFLVRHLIAYFDFPESGILSSPILSGLAAILTVNIIISSFALLALREPSHAPISALSVAQSESEQQT 105
            MSS+Q G++A+A+EP N+PII +F RFA ALA  P++ YFLV +L+ + +  +SGILS+PIL GLAAILT+NI+ S FALLALRE SH+   A +  +SES ++T
Sbjct:    1 MSSMQEGIEALAREPTNKPIIAKFFRFAAALAILPVIFYFLVYNLVRFLNLNQSGILSAPILGGLAAILTINIVTSLFALLALRERSHSEPGASNKTESESSEKT 105
The following BLAST results are available for this feature:
BLAST of Ggra4583.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3INE73.490e-2856.19Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019013Vacuolar ATPase assembly integral membrane protein Vma21PFAMPF09446VMA21coord: 20..82
e-value: 1.5E-7
score: 31.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 94..121
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..26
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 61..83
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 84..121
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 27..49
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 50..60
NoneNo IPR availableTMHMMTMhelixcoord: 24..46
NoneNo IPR availableTMHMMTMhelixcoord: 61..83

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000941_piloncontigtig00000941_pilon:41859..42224 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4583.t1Ggra4583.t1Gracilaria gracilis GNS1m malemRNAtig00000941_pilon 41859..42224 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra4583.t1 ID=Ggra4583.t1|Name=Ggra4583.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=122bp
MSSIQAGLQAIAQEPANQPIITRFLRFAGALAFFPLVAYFLVRHLIAYFD
FPESGILSSPILSGLAAILTVNIIISSFALLALREPSHAPISALSVAQSE
SEQQTHESTPAQSAAGREKTE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019013Vma21