Ggra4559.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra4559.t1
Unique NameGgra4559.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length311
Homology
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BLAST of Ggra4559.t1 vs. uniprot
Match: A0A2V3J5G0 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J5G0_9FLOR)

HSP 1 Score: 249 bits (636), Expect = 3.600e-78
Identity = 150/297 (50.51%), Postives = 199/297 (67.00%), Query Frame = 0 
Query:    1 MRTRTSRFRFFTDALASNGMPLPDMSDLMNQAPTTNPTRPXXXXXXXXXQPSPSYNPFDDADSSM-HSRHNHPSSHGRHQHHVRTNPADESSDLMMRNIVLGATLLMAMFMFLHAALYVGIFFVGVLAPAWGTVKCMEGRSSSSGVVVELLDDDSDTDE-FDVNNASIRDVNADQSLRNWQSYWIIFALLFTFDALFIRTVFSSSSFITSPFHNTIAFALLSWLSKNRAANSAALYSAFVRPTFLKLEDSVDSMASNAMVHMDRVSQHVIVSAHEAIAPVVKQLEQAAAATATQMQQ 295
            MRTR+SR R FTDA+A+N MP  +   L++QAP  + +RP           + S NPF+   S + ++RH  P    + + H  ++ A  SSD+MMRNIV+G  LL+AM MF+HAA+YV IF VGVL PAW T KCMEGR  S  V+V+L+DDD   D+  DV+N  +R  N  Q++ NW +YW++FALLFT D+L IR +           +NTI FALLSW+++N+AANSA +Y AFVRPT LK+E+ VD  A+ AM HMDR SQ +++  HE I P+VKQLEQAA +TA QMQQ
Sbjct:    1 MRTRSSRLRMFTDAIAANIMPAYEAEQLLHQAPAQD-SRPGARRRTTSASDTQS-NPFESTPSPLSYNRHVPPP---QFELHSPSSNAP-SSDVMMRNIVMGTALLVAMLMFMHAAVYVAIFVVGVLTPAWRTFKCMEGRPDSD-VLVQLVDDDDYDDQVIDVDNMHLRHENGQQTMHNWHAYWVLFALLFTTDSLLIRLILXXXX--XXXXYNTILFALLSWMTRNKAANSAFVYGAFVRPTLLKVENFVDDAAAKAMFHMDRASQQLVLGVHEVITPLVKQLEQAATSTAAQMQQ 288
The following BLAST results are available for this feature:
BLAST of Ggra4559.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3J5G03.600e-7850.51Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 279..299
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 28..61
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 21..88
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 201..310
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 98..127
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..97
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 128..180
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 181..200
NoneNo IPR availableTMHMMTMhelixcoord: 178..200
NoneNo IPR availableTMHMMTMhelixcoord: 104..126
IPR004345TB2/DP1/HVA22-related proteinPFAMPF03134TB2_DP1_HVA22coord: 171..240
e-value: 2.1E-7
score: 30.8

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000898_piloncontigtig00000898_pilon:992056..992988 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4559.t1Ggra4559.t1Gracilaria gracilis GNS1m malemRNAtig00000898_pilon 992056..992988 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra4559.t1 ID=Ggra4559.t1|Name=Ggra4559.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=311bp
MRTRTSRFRFFTDALASNGMPLPDMSDLMNQAPTTNPTRPARRPSRRTSQ
PSPSYNPFDDADSSMHSRHNHPSSHGRHQHHVRTNPADESSDLMMRNIVL
GATLLMAMFMFLHAALYVGIFFVGVLAPAWGTVKCMEGRSSSSGVVVELL
DDDSDTDEFDVNNASIRDVNADQSLRNWQSYWIIFALLFTFDALFIRTVF
SSSSFITSPFHNTIAFALLSWLSKNRAANSAALYSAFVRPTFLKLEDSVD
SMASNAMVHMDRVSQHVIVSAHEAIAPVVKQLEQAAAATATQMQQQNAKH
VKPRQSRGAL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004345TB2_DP1_HVA22