Ggra4552.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra4552.t1
Unique NameGgra4552.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length591
Homology
BLAST of Ggra4552.t1 vs. uniprot
Match: A0A2V3J471 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J471_9FLOR)

HSP 1 Score: 442 bits (1138), Expect = 5.140e-146
Identity = 240/554 (43.32%), Postives = 359/554 (64.80%), Query Frame = 0
Query:    4 PSNPRLTADIPSTVLRGKEKSRKEDDAPSPSSTIVVESVSIARARSKTIRFDLLPSDVIARIVHHALEHSKRGVPYYPPIKAPSLVPLALTNQSIRRIIAPKCDSDLGYVDAVHGANENYEERLAAKKDLVQFYRTQNGHLKKFNLHKRSSISHLLRLYATEIVLSTKPRLTEIDVSDIPKDGTYFARTLQTVVGLIQNSSSSLQSLKMSFHNTKFVEMIISLSLPNLAKLNIRFPHSVPASTLTRFFAKHGAMLDTLTMSAVGDIPDYVVLQMVAYTPRIKHLNFNGGMDPAISYFFLGLIRSYPRLESVSIHDYGLCEDLREAFQNHPNEPKIYVRRSIFDDLPDLVSDVPSFSRTLTRAETVICECDRDIMALIGLQNLEELHIRVMPPMVSEFRTAVSILKKLKSMTVNCEN-LGGPEVSRAIIDEQLVLALQEGKSLKQLVIAYPPLSVPSLQRLMKSYGERLEYFVAGIHSPGRSRMRCIIDMIQWVMRYNPNMKVLCFGLGLCYDSKALELYHELVRTIELAEEKLPMLNTHWLRLNGKSLVAFSPP 556
            P+  RLT+   S      EK+ +    PSPS+TIVV+ VS+A  R   ++   LP+DV++RIV  A+  S+RGVPYYPPIK+ +L+PLAL+N+ +R ++A  C SD G+++A + A ++ + +L A+ DL+ FYR Q+GHL +F LHK+S I   +RLY T IVLSTKPRL E+D++D+ K G    +  ++V  L++ S+  L+ L +S  N   +E++ ++S P L  L++R P S  A+++   F+ HG  L TLT+  + + P   V Q+  + P I +L +N GMDP++S  FL L+ SYP+LES+S+++  + E+L      HPN+PK++ RR   ++   L+S VP  S TL RA+++      DI A++  +NLEELHIRV   +    R+ +S+L KLKS+ ++  +     E +RA +D  +V+A+Q  KSL+QLVI  P +S  SLQ +M S G+RLEY V+GIH+P RS  RCI+ +I+  M ++PN+KVLCFGLGL YD K   L  +  RTI++AEEKL  LNT+WLR N +SL+    P
Sbjct:    9 PATTRLTSPASSA----DEKAHRYG-TPSPSTTIVVQDVSLALTRPVQLQLLSLPNDVLSRIVSVAISDSQRGVPYYPPIKSHTLLPLALSNKHLRGVVASTCVSDHGFIEA-YLAQDDEDRQLQARMDLISFYRVQDGHLSRFFLHKKSIIPSDVRLYGTNIVLSTKPRLCELDITDVKKGGDCGDQVFESVTELLRISAPYLEVLHLSLQNKDLLEVVNTMSFPKLNTLSLRLPFSPSAASMESLFSTHGTNLHTLTLFCISNFPGQAVAQLPTFAPSITNLTYNSGMDPSVSSAFLSLVESYPKLESLSLNNCRVSEELCHTLSAHPNKPKLFFRRVPVENPASLLSSVPHLSETLFRADSMTLNGSDDIAAVLRFRNLEELHIRVHADVAPLVRS-LSVLPKLKSLFISYHDPWEWDESTRAEVDRNIVIAVQAAKSLRQLVIYSPTMSFDSLQTIMISVGDRLEYLVSGIHTPKRSHSRCIMRLIRCAMHHSPNLKVLCFGLGLQYDRKVNSLQSQFERTIDMAEEKLSGLNTYWLRANLRSLLNIRKP 555          
BLAST of Ggra4552.t1 vs. uniprot
Match: R7QBE6 (PEROXIDASE_4 domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QBE6_CHOCR)

HSP 1 Score: 124 bits (310), Expect = 1.810e-26
Identity = 124/507 (24.46%), Postives = 213/507 (42.01%), Query Frame = 0
Query:   75 RGVPYYPPIKAPSLVPLALTNQSIRRIIAPKCDSDLGYVDAVHGANENYEERLAAKKDLVQFYRTQNGHLKKFNLHKRSSISHLLRLYATEIVLSTKPRLTEIDVSDIPKDGTYFARTLQTVVGLIQNSSSSLQSLKMSFHNTKFVEMIISLSLPNLAKLNIRFPHSVPASTLTRFFAKHGAM-----------LDTLTMSAVGDIPDYVVLQMVAY-TPRIKHLNFNGGMDPAISYFFLG-----LIRSYPRLESVSIH----DYGLCEDLREAFQNHPNEPKIYVRR----SIFDDLPDLVSDVPSFSRTLTRAETVICECDRDIMALIGLQNLEELHIRVMPPMVSEFRTAVSILKKLKSMTVNCENLGGPEVSRAIIDEQLVLALQEGKSLKQLVIAYPPLSVPSLQRLMKSYGERLEYFVAGIHSPGRSRMRCIIDMIQWVMRYNPNMKVLCFGLGLCYDSKALELYHELVRTIELAEEKLPMLNTHWLRLNGKSLVAFSPP 556
            RG PYYPP     L+PL+ T+ S+R  +A    +D  ++ A   + E+   RLA +  L+ +YR    +L+  +L  R +++  L       V + +P L  +D+S            + T+  L + +  SL  L ++      +++     L  L  L++R  H  P   +      H              L+TL       +P  +  + +A  TP +K+L +            LG     L      LE + +     D+ L + L E   +H +  ++ +            P L S   S  R+L  A+  +   +  ++A      +E   + +     +  R     L +L SM +         V +   D  +           +LV+    L V  L ++ ++ G R EY V G+H+P  S  R I+ ++  V  +    K+LCFGL L YD +A +L+   V+TI+  E++LPML+T WLR N +SL+A   P
Sbjct:    2 RGTPYYPPATPHQLLPLSETSVSLRAAVARHLTTDAHWLRA---SPEDAPARLAPR--LLAWYRFAAANLRVLSLSPRHALAPALVSDIIATVAANRPPLRVLDLSVFALPAPPTEHFVHTLDALFRAARLSLVELHLNLAADFLLDLAADAHLVALTTLDLR--HEGPLDPMRLLSLLHSLRELTATTSLKPKLETLHFRLSEPLPPGLRPEAIAAATPAVKNLRYTELSALRADCTELGVPIVQLATVLKGLEELVLTNATLDFSLLQPLLER-DSHRHLTRVSLNNCSIPGFLSGFPLLRSSSDSLIRSLDLADVTLGASELAVVAE-RCSAVEAFGLSIERATAAALRRVCVSLPQLASMDLRVVGAKDEPVRQGCRDGIVSAVCATRGEFSKLVVRGETLPVAGLAQIFRTLGARFEYLVTGVHAPRVSMSRAIMGLLAVVKEHCTAFKILCFGLDLAYDPRADDLHEAFVKTIDGLEDRLPMLDTVWLRRNAESLLAIQKP 499          
The following BLAST results are available for this feature:
BLAST of Ggra4552.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3J4715.140e-14643.32Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7QBE61.810e-2624.46PEROXIDASE_4 domain-containing protein n=1 Tax=Cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 120..140
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..34
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 563..590
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 559..590
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 163..467
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10Ribonuclease Inhibitorcoord: 131..528
e-value: 2.6E-12
score: 47.8

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000898_piloncontigtig00000898_pilon:978377..980149 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4552.t1Ggra4552.t1Gracilaria gracilis GNS1m malemRNAtig00000898_pilon 978377..980149 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra4552.t1 ID=Ggra4552.t1|Name=Ggra4552.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=591bp
MSLPSNPRLTADIPSTVLRGKEKSRKEDDAPSPSSTIVVESVSIARARSK
TIRFDLLPSDVIARIVHHALEHSKRGVPYYPPIKAPSLVPLALTNQSIRR
IIAPKCDSDLGYVDAVHGANENYEERLAAKKDLVQFYRTQNGHLKKFNLH
KRSSISHLLRLYATEIVLSTKPRLTEIDVSDIPKDGTYFARTLQTVVGLI
QNSSSSLQSLKMSFHNTKFVEMIISLSLPNLAKLNIRFPHSVPASTLTRF
FAKHGAMLDTLTMSAVGDIPDYVVLQMVAYTPRIKHLNFNGGMDPAISYF
FLGLIRSYPRLESVSIHDYGLCEDLREAFQNHPNEPKIYVRRSIFDDLPD
LVSDVPSFSRTLTRAETVICECDRDIMALIGLQNLEELHIRVMPPMVSEF
RTAVSILKKLKSMTVNCENLGGPEVSRAIIDEQLVLALQEGKSLKQLVIA
YPPLSVPSLQRLMKSYGERLEYFVAGIHSPGRSRMRCIIDMIQWVMRYNP
NMKVLCFGLGLCYDSKALELYHELVRTIELAEEKLPMLNTHWLRLNGKSL
VAFSPPNEELKEDVIDEGLEDIDDISEDGEDSEAEASDVG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032675LRR_dom_sf