Ggra4398.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra4398.t1
Unique NameGgra4398.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length612
Homology
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BLAST of Ggra4398.t1 vs. uniprot
Match: A0A2V3IGK7 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IGK7_9FLOR)

HSP 1 Score: 723 bits (1865), Expect = 5.980e-255
Identity = 392/615 (63.74%), Postives = 468/615 (76.10%), Query Frame = 0 
Query:    1 MPFVAVALSLARALRRDVSVA---KRQQSMDQTQSQSVLFLLLGALLGVAYSLGTEKYMRAMRHPHIFVRNAMLWLSAMAWLFAAAAVAWLASRIYNQTDGGLEGFDRSLGVLIPFVVRADLIVDWAKRVAWALLNMSTWTQGTVQIHRLLHRAPHMQQLVSVNPDVSSIISPSRTAQA-LIQSENHLWTQDAHSLVHISELIHHFEKLGRVAVYAVAVLFTAIPAAVAWIFYALCQILASIRSSTKPLALLYFVSVLLAPVCAVVLVISAIMLLGGVVTLSVVGIIVQFSVYWSTRIVYYMVRVLLSQAWAGFPQVRYLHMGHKADHGLTNGPMAVRGVRSPEEAGIAMAQMGSLLPTELEFTLSSWDGTDHRRGDRLKPISASISRHVRSLSFIGNVLERSYSNTPSSGVNISNSTSNSGRERVGKNSDPNVNSSGNRDHLQDRSVQIPDRIHTIQSEPGANRTSDPNHALENNSRILIFMRRLGLDFSVRSGRRRRLSTFYALAMLVQLQVDSGGNAWRLESVENLSDSEYSNRISDLKCIIADEACTAVEELVSRLRGSSKYRLIPTGFPNSRMVPVEDWLKTALLSFLETATE-TDDDFKAPGDSTLSLE 610
            M  +A A SLAR + RD+      ++QQ  D TQSQSV+FLLLGALLGVAYSLGTEKYMRAMRHPHIFVRNAMLWLSA+AWLFAAAAV WLASRIYNQ DGGLEGFDRS+GVLIPFVVRADLIVDWAKRVAWAL+NMSTWTQ TVQ+ RLL RAP M+  V VN DV+ +   S + Q+ L+ +EN LWTQDAHSLVH+SEL+HHFEKLGRVAVYA+AVL  AIPAA+AW+ YA+ QI+   R S    ALLY  S++L PV A VL+IS+I+LLGGVV+LSVVG I+QFSVYWSTRI YYMVRVLLSQ WAGFP +R LH  H  D  +    M VRG+RSP EA IAMA+MGSLLPTELEF+LSSWDGTD R+G RLKPIS SISRHVR+LSFIG+ ++R  S+  SS  N + S S++   +    S+ +  +S       +R +Q  DRI +     G+   +D   A + N  IL+ M++LGLD SV+SGRRRRLSTFYA AMLV +Q++SGGNAWRL SVE L DS++  RIS   C+IADEA  AVEEL +RL+ SSKYR++PTG+P+SRMVPV DWL++ALL FL+   +    D KAP  S LS+E
Sbjct:    1 MASLAAAFSLARHIPRDLPTILSRQQQQQNDPTQSQSVVFLLLGALLGVAYSLGTEKYMRAMRHPHIFVRNAMLWLSAIAWLFAAAAVIWLASRIYNQVDGGLEGFDRSMGVLIPFVVRADLIVDWAKRVAWALINMSTWTQSTVQLRRLLRRAPQMEHAVCVNHDVTDLFRTSESVQSRLLTAENQLWTQDAHSLVHLSELVHHFEKLGRVAVYALAVLVGAIPAALAWLVYAVYQIIICFRCSAHAPALLYTASIMLTPVFAFVLIISSIILLGGVVSLSVVGTIIQFSVYWSTRIAYYMVRVLLSQQWAGFPHLRTLHTMHAVDPDIATASMIVRGIRSPAEASIAMAEMGSLLPTELEFSLSSWDGTDKRKGGRLKPISVSISRHVRTLSFIGDFVDRHSSSANSSPPNGNPSASSTANTKETHRSELDTAASSAESGRHNRQLQNADRIPSSIEVHGSEARTDEERAKDRNVAILLLMQKLGLDLSVKSGRRRRLSTFYAFAMLVHMQIESGGNAWRLNSVEYLCDSDFKKRISSFSCVIADEASIAVEELSNRLKVSSKYRVVPTGYPSSRMVPVADWLRSALLGFLDADVDMVYSDDKAPEISALSVE 615
The following BLAST results are available for this feature:
BLAST of Ggra4398.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IGK75.980e-25563.74Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 447..467
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 406..440
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 406..467
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 244..265
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 16..30
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 208..232
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 291..611
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 91..207
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 266..270
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 51..70
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..10
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 271..290
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 11..15
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..15
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 71..90
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 31..50
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 233..243
NoneNo IPR availableTMHMMTMhelixcoord: 71..93
NoneNo IPR availableTMHMMTMhelixcoord: 245..264
NoneNo IPR availableTMHMMTMhelixcoord: 210..232
NoneNo IPR availableTMHMMTMhelixcoord: 34..51
NoneNo IPR availableTMHMMTMhelixcoord: 268..290

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000898_piloncontigtig00000898_pilon:183194..185029 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4398.t1Ggra4398.t1Gracilaria gracilis GNS1m malemRNAtig00000898_pilon 183194..185029 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra4398.t1 ID=Ggra4398.t1|Name=Ggra4398.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=612bp
MPFVAVALSLARALRRDVSVAKRQQSMDQTQSQSVLFLLLGALLGVAYSL
GTEKYMRAMRHPHIFVRNAMLWLSAMAWLFAAAAVAWLASRIYNQTDGGL
EGFDRSLGVLIPFVVRADLIVDWAKRVAWALLNMSTWTQGTVQIHRLLHR
APHMQQLVSVNPDVSSIISPSRTAQALIQSENHLWTQDAHSLVHISELIH
HFEKLGRVAVYAVAVLFTAIPAAVAWIFYALCQILASIRSSTKPLALLYF
VSVLLAPVCAVVLVISAIMLLGGVVTLSVVGIIVQFSVYWSTRIVYYMVR
VLLSQAWAGFPQVRYLHMGHKADHGLTNGPMAVRGVRSPEEAGIAMAQMG
SLLPTELEFTLSSWDGTDHRRGDRLKPISASISRHVRSLSFIGNVLERSY
SNTPSSGVNISNSTSNSGRERVGKNSDPNVNSSGNRDHLQDRSVQIPDRI
HTIQSEPGANRTSDPNHALENNSRILIFMRRLGLDFSVRSGRRRRLSTFY
ALAMLVQLQVDSGGNAWRLESVENLSDSEYSNRISDLKCIIADEACTAVE
ELVSRLRGSSKYRLIPTGFPNSRMVPVEDWLKTALLSFLETATETDDDFK
APGDSTLSLEN*
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