Ggra4345.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra4345.t1
Unique NameGgra4345.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length104
Homology
[Close]
BLAST of Ggra4345.t1 vs. uniprot
Match: A0A2V3IQV9 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IQV9_9FLOR)

HSP 1 Score: 53.9 bits (128), Expect = 3.100e-7
Identity = 28/43 (65.12%), Postives = 36/43 (83.72%), Query Frame = 0 
Query:   20 EFELKPIHIIVMIITVLHAMAIGVWLMLFLSSDKDRRSSRSSQ 62
            E +LKPIHIIV+IITVLHA+AI +W++LFL  +K RR  R+SQ
Sbjct:   21 ELQLKPIHIIVIIITVLHALAIALWVILFLPGEKARRPLRTSQ 63
The following BLAST results are available for this feature:
BLAST of Ggra4345.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IQV93.100e-765.12Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 62..96
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 55..103
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 26..49
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 50..103
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..25
NoneNo IPR availableTMHMMTMhelixcoord: 26..48

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000898_piloncontigtig00000898_pilon:12573..12968 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4345.t1Ggra4345.t1Gracilaria gracilis GNS1m malemRNAtig00000898_pilon 12573..12968 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra4345.t1 ID=Ggra4345.t1|Name=Ggra4345.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=104bp
MDAKVETIVQENAGANSLEEFELKPIHIIVMIITVLHAMAIGVWLMLFLS
SDKDRRSSRSSQRARPTPSTSSAATSSTRETSSTTTTSTPESSSTANESK
KDQ*
back to top