Ggra3753.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra3753.t1
Unique NameGgra3753.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length1034
Homology
BLAST of Ggra3753.t1 vs. uniprot
Match: A0A2V3IME4 (Glutamate receptor 1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IME4_9FLOR)

HSP 1 Score: 214 bits (544), Expect = 1.760e-56
Identity = 128/362 (35.36%), Postives = 195/362 (53.87%), Query Frame = 0
Query:  655 NFTDVVGDFDECSK------DSNCDYDVGIGGWFEIPSRYGRVHFVPPFAYDNHRVYAHINSTEEAVRFDWFFVEAFDLKIWLCIGGLWIVFTGLKLFDMHF-EYPPEETGGENRNRVMRFL-------------RAVQSTITKMLILSDENLINYKHTTRQWFINTALVFFFLVLVLLYEASMTASLLQEEPKSLFTSITDFRTCKIKPSDVCFRQNVAFRDLWISSISSEHENISGCRENGTVLEAYESNSYEDLFERILNGNCKYAVMLESVAEAAIRERYCGRIIAQGDPIFTSGLSMILPSSPRFVDVDLNRIMSEGTLELVMGKKKSHSDEYFDSLPSCETS-SVRLQLPRLISFF 995
            +F   V   ++CS+      D  C  D+GI GWF+   R+ RV F+PPF  D + V  HI+++E + R   FF+  FD   W+ I GL ++F+ +K FD  F      E   E   R+ RF+             RA+QST ++M++L D +++  +   RQW +NT +    L L+L YEASMTASL+QE   + F SI DF+TC+I P++VC     A    W +SI+     I  C +     + + ++SY++LF  + N  CKY ++LES A AAI  +YCG+++A   PI++ GL+M+LP +    DV     MS  TL++         ++YF S+P C  +    L   +L  FF
Sbjct:   92 SFNHFVRMMEDCSENGAVRNDPGCTCDIGISGWFQNHHRFRRVDFLPPFVTDGYEVVFHISNSEVSGR-RMFFITTFDRLAWVSIFGLMLLFSAIKFFDRKFCPIDSFEALEETNPRIQRFVHVLMKYPTLYRFRRALQSTFSRMILLPDSDVVENQTANRQWVLNTVISVSGLFLILSYEASMTASLVQETVSAGFQSIQDFQTCRISPAEVCLPGGGALEMFWNTSIA-----IEVCHKQR---QPFFASSYDELFHAVDNRTCKYGLLLESTANAAINSKYCGKLLAAEKPIYSGGLAMVLPKNSNLTDV-----MSYATLKITNEVATPGIEQYFASIPKCSINPETTLNFRKLRLFF 439          
BLAST of Ggra3753.t1 vs. uniprot
Match: A0A2V3IMD5 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IMD5_9FLOR)

HSP 1 Score: 207 bits (528), Expect = 9.180e-55
Identity = 119/355 (33.52%), Postives = 198/355 (55.77%), Query Frame = 0
Query:  670 SNCDYDVGIGGWFEIPSRYGRVHFVPPFAYDNHRVYAHINSTEEAVRFDWFFVEAFDLKIWLCIGGLWIVFTGLKLFDMHFEYPPEETGGENRNRVMRFL-------------RAVQSTITKMLILSDENLINYKHTTRQWFINTALVFFFLVLVLLYEASMTASLLQEEPKSLFTSITDFRTCKIKPSDVCFRQNVAFRDLWISSISSEHENISGCRENGTVLEAYESNSYEDLFERILNGNCKYAVMLESVAEAAIRERYCGRIIAQGDPIFTSGLSMILPSSPRFVDVDLNRIMSEGTLELVMGKKKSHSDEYFDSLPSCETS-SVRLQLPRLISFFIIFGGLAGLLLLIIV 1010
            ++C  D+GIGGWF+   RYG+V F+PPF +D +RV  H+++T+ +     FF++ FD   W+ I  L  +FT LKL D  F      T     +R+ R L             +A QS++T++++  D  +++   +TRQWF+N  +    L LVL +EASMTASL+QE+  S + S  DFR+CKI PSDVC  +  A    W ++I++     S C  NG  ++    ++YE++++ + +G CK+++ LESV    IR + CG+++   +P++TSGLSM++P         L   MS+ T+ L++ +  S  + +    P C    +  L   +L  FFI+   +   +L +++
Sbjct:   73 NSCPCDIGIGGWFQNQFRYGKVDFLPPFVHDRYRVATHVSNTDASGEMP-FFLKTFDSLSWITIVALTCIFTLLKLLDSRFAVAEPYTPLSGVSRIRRCLHFLWKHPRLYRLRKAGQSSVTRLMLQPDNEVVDNGKSTRQWFLNLVIGICALFLVLSFEASMTASLVQEKITSTYESPEDFRSCKIPPSDVCALRGGALEMFWNTNIAT-----SNCH-NGNPIQYL--STYEEIYDGLASGKCKFSICLESVITTQIRTQSCGQLVLLEEPLYTSGLSMVVPKGSN-----LTEAMSKATMTLLLSQPSSFLESFLRKWPKCTKKVASTLTFRKLKLFFILAFSVCAAILFVML 413          
BLAST of Ggra3753.t1 vs. uniprot
Match: A0A2V3IMD4 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IMD4_9FLOR)

HSP 1 Score: 199 bits (506), Expect = 7.990e-51
Identity = 120/378 (31.75%), Postives = 195/378 (51.59%), Query Frame = 0
Query:  656 FTDVVGDFDECSK------DSNCDYDVGIGGWFEIPSRYGRVHFVPPFAYDNHRVYAHINSTEEAVRFDWFFVEAFDLKIWLCIGGLWIVFTGLKLFDM---HFEYPPEETGGENRNRVMRFLR----------AVQSTITKMLILSDENLINYKHTTRQWFINTALVFFFLVLVLLYEASMTASLLQEEPKSLFTSITDFRTCKIKPSDVCFRQNVAFRDLWISSISSEHENISGCRENGTVLEAYESNSYEDLFERILNGNCKYAVMLESVAEAAIRERYCGRIIAQGDPIFTSGLSMILPSSPRFVDVDLNRIMSEGTLELVMGKKKSHSDEYFDSLPSCETS-SVRLQLPRLISFFIIFGGLAGLLLLIIVTLR 1013
            F + +   + CS+      D +C  D+GIGGWF    R+GRV F+PPF YD+++V  HI+ ++ + R   FF+  FD + WLCI GL ++F  +++F     H  Y P E       R+  FL           ++Q   ++M+++ +    +  + T  W + T +    L L+L YEASMTAS++QE   S F S  DF+TC+I P DVC  +  +F   W   ++ E      C +  +    +   SYE++F+ + N  C++ ++LES   + I  +YCG I++ G+PI+T GL+M+LP      +V     MS  TL++         +E++ +  SC    +  L   +L  FFII     G L L +V ++
Sbjct:   93 FNNFITMMERCSENGTIKDDPHCKCDIGIGGWFTNSKRFGRVDFLPPFVYDSYQVIFHISDSKVSGRSP-FFITTFDSRGWLCIFGLVLLFATIRMFSAFGDHARYQPLEPTVTPIRRIAHFLYNHPFFYRLRISIQRIFSRMILMPEPEDFSRPNNTFLWILKTVVTICGLFLILAYEASMTASIVQETVTSEFQSGKDFQTCRIDPKDVCLPRGGSFDTYWTEVLAKERP----CHKGRSP---HLMTSYEEVFQGVENRTCRFGILLESTVHSTIHRKYCGTILSNGNPIYTGGLAMVLPKDSMHTEV-----MSLATLKITDAATVPSLEEFYSTTGSCSAELATSLPFQKLQLFFII-AFCTGFLFLTVVVIK 456          
BLAST of Ggra3753.t1 vs. uniprot
Match: A0A2V3IUK7 (Glutamate receptor ionotropic, NMDA 2C n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IUK7_9FLOR)

HSP 1 Score: 189 bits (481), Expect = 3.310e-48
Identity = 113/347 (32.56%), Postives = 177/347 (51.01%), Query Frame = 0
Query:  650 EEGGGNFTDVVGDFDECSK------DSNCDYDVGIGGWFEIPSRYGRVHFVPPFAYDNHRVYAHINSTEEAVRFDWFFVEAFDLKIWLCIGGLWIVFTGLKLFDMHFEYPP---EETGGENRNRVMRFLR--------AVQSTITKMLILSDENLINYKHTTRQWFINTALVFFFLVLVLLYEASMTASLLQEEPKSLFTSITDFRTCKIKPSDVCFRQNVAFRDLWISSISSEHENISGCRENGTVLEAYESNSYEDLFERILNGNCKYAVMLESVAEAAIRERYCGRIIAQGDPIFTSGLSMILPSSPRFVDVDLNRIMSEGTLELVMGKKKSHSDEYFDSLPSC 979
            E  G +F   +   D C++      D  C  ++GIGGWF    R  RV  +PPF YD  RV  H+++T  +     FFV  FDL+ WLC+  + I+F   K  D  F   P   E     +  R + FLR        +++ST  ++++ SD +++  +H    + +N  +  F L++VL YEASMTA+L+QE   S + S+ D +TC+IKP DVC     A    W  +I+        C       + Y   S+E+  + + NG CK+ ++L+S  + AI  +YCG++++ G+PI+T GLSMILP +       L + M   TL+L          +YF ++  C
Sbjct:   85 EGDGTSFNRFIDMMDNCTQNGAIKDDPACRCEIGIGGWFNSADRDERVDLLPPFVYDGIRVTFHVSNTRRSGS-KLFFVTTFDLRSWLCLFAIIILFALAKFLDERFAPIPSADEPNAANSWGRCLHFLRTNWNRLITSIRSTTLRIVLQSDHDIVQNQHGAHNFNLNLIIGIFGLLVVLSYEASMTATLVQETVVSDYQSVEDLKTCRIKPEDVCVPGGSAVLTFWNDAIA-----YGDCHRESKG-KNYFRGSFEETLDAVKNGTCKFGLVLDSTIQEAIHGKYCGQLLSSGEPIYTGGLSMILPKNSN-----LTKAMRLATLKLRNEASAPSLQQYFQTMSKC 419          
BLAST of Ggra3753.t1 vs. uniprot
Match: R7QE12 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QE12_CHOCR)

HSP 1 Score: 92.8 bits (229), Expect = 3.840e-18
Identity = 58/165 (35.15%), Postives = 93/165 (56.36%), Query Frame = 0
Query:  333 IGIGGWFQTPNRYAKVHFIPPYAYDRYRVFTHVDNTTYGN-DFFFFVSFSPFVWLTISGIVLLFALSKMADWQYALPETKKPEEHSWDFRRKKFAHGFLYL---HHAKRAFQSTVNRMLLQSDDELVMDKEKKNNNRKSAFQAVLNILLSIFALFIILTYEASMT 493
            + +GGWF+ P R+ +V F+PP+A D   +  H DNT+  +   FF  +FS  VW  I G+V +F   KM D ++  P+           R ++  H  L     +  ++A QST++RM+ Q   + +   E K ++R    Q VLN+L+++ +LF+ILTYEA+MT
Sbjct:    1 MAVGGWFRNPERFRRVDFLPPFAIDGLSIVVHTDNTSSASAGAFFITAFSTTVWFFIVGLVCVFTFLKMLDRRFVPPDESYQPLPRTSSRVRRMKHYLLKSRIPYRLRKALQSTLSRMVGQGGYDPI---EGKTSSR----QWVLNLLIALCSLFLILTYEAAMT 158          
The following BLAST results are available for this feature:
BLAST of Ggra3753.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A2V3IME41.760e-5635.36Glutamate receptor 1 n=1 Tax=Gracilariopsis chorda... [more]
A0A2V3IMD59.180e-5533.52Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3IMD47.990e-5131.75Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3IUK73.310e-4832.56Glutamate receptor ionotropic, NMDA 2C n=1 Tax=Gra... [more]
R7QE123.840e-1835.15Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 76..100
NoneNo IPR availableCOILSCoilCoilcoord: 33..53
NoneNo IPR availablePANTHERPTHR18966IONOTROPIC GLUTAMATE RECEPTORcoord: 653..1010
coord: 304..647
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 489..726
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 797..814
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1015..1033
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 468..488
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 727..746
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 815..990
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 398..467
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 747..796
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 991..1014
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 374..397
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..373
NoneNo IPR availableSUPERFAMILY53850Periplasmic binding protein-like IIcoord: 257..647
NoneNo IPR availableSUPERFAMILY53850Periplasmic binding protein-like IIcoord: 673..942
NoneNo IPR availableTMHMMTMhelixcoord: 719..741
NoneNo IPR availableTMHMMTMhelixcoord: 375..397
NoneNo IPR availableTMHMMTMhelixcoord: 468..490
NoneNo IPR availableTMHMMTMhelixcoord: 992..1014
NoneNo IPR availableTMHMMTMhelixcoord: 797..814

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000850_piloncontigtig00000850_pilon:1310889..1321133 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3753.t1Ggra3753.t1Gracilaria gracilis GNS1m malemRNAtig00000850_pilon 1310889..1321133 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra3753.t1 ID=Ggra3753.t1|Name=Ggra3753.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=1034bp
MGNTVLTFVTFVEKQVDSHFERRDLRENNPQHLAQLEKLFQILSHRIDVL
QKECDQNVVANVLISAHLQCCLKEGLDEVKERVESTLERCKELKEEMKKR
LKWRPKAVRKQLNELDGTATEFKQFVKDTFSTLVDMVSVVRVELLGWTRL
RDSSEGEMSGMSEDKTALLNVRWSGDGSMIATRCAGVVAAHDQQVWLCDS
HGRRHSDGEVPWEVSDLGGVKDLVWASERALLAVSGSKQVLLWELVDVAK
FDEVQHLRCCYMNEKPISYTDSSQVNSISDIKGVIAEYVPTLQKCSRWTC
GDIKPYQGTGTNYNGFVDEMNHCADHSNCTCDIGIGGWFQTPNRYAKVHF
IPPYAYDRYRVFTHVDNTTYGNDFFFFVSFSPFVWLTISGIVLLFALSKM
ADWQYALPETKKPEEHSWDFRRKKFAHGFLYLHHAKRAFQSTVNRMLLQS
DDELVMDKEKKNNNRKSAFQAVLNILLSIFALFIILTYEASMTSSILNEN
IKSDYQSIESFTACDIKPSDVCFVGNEAFETIWDAFIKPKQLVNSRCHTE
NRNEDDFKESTLINETKVDSYEDLFAKIESRYCRYGVAFEAGGNAVMKDM
KYCKKIVAQGQPLFERGVSMLLPRGSKYEDKISKATLQLKVNRETQYMAE
EGGGNFTDVVGDFDECSKDSNCDYDVGIGGWFEIPSRYGRVHFVPPFAYD
NHRVYAHINSTEEAVRFDWFFVEAFDLKIWLCIGGLWIVFTGLKLFDMHF
EYPPEETGGENRNRVMRFLRAVQSTITKMLILSDENLINYKHTTRQWFIN
TALVFFFLVLVLLYEASMTASLLQEEPKSLFTSITDFRTCKIKPSDVCFR
QNVAFRDLWISSISSEHENISGCRENGTVLEAYESNSYEDLFERILNGNC
KYAVMLESVAEAAIRERYCGRIIAQGDPIFTSGLSMILPSSPRFVDVDLN
RIMSEGTLELVMGKKKSHSDEYFDSLPSCETSSVRLQLPRLISFFIIFGG
LAGLLLLIIVTLRVGRKCFNDSSKLDEEVNEDK*
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