Ggra3529.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra3529.t1
Unique NameGgra3529.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length925
Homology
BLAST of Ggra3529.t1 vs. uniprot
Match: A0A2V3J1N2 (Protein aardvark n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J1N2_9FLOR)

HSP 1 Score: 741 bits (1912), Expect = 2.110e-257
Identity = 477/608 (78.45%), Postives = 535/608 (87.99%), Query Frame = 0
Query:  318 VPTALRFDDLD-PQETTAAKASSSNGKPPLPPSKAAQRQRPKVTILETPTTIPDRRDDGPPSVLETAAPLDNSPAEEYASISERGERVAIAFERLGKQTDEYPETPSELAGGLSPKEILIPLIVDSMRQHRSDPKVADRALTILRRLTVSENCRRCIGENGGIEAVVEIMRAHSLRSGIQTQGCLTLANLAFRNRNNKEAVMKCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFTNRSDAGEQETSVASGAVEVLLSALERYIGSETVQNNALIALTNIASRSPYGMERLRTAGGIQVLVSSLKENVHSQRLAEVGMSLTRVVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVMNECTTASPDGVCYFLKALCNATFDSMASKTLAGRCGAVEATLRIISDSSYKEAGRVVEDACRLLRNLLEGVSQNQRNMLKHRGTVLVLDAARVHGEALAGVAEHSVAIFVNMAASRGFISQLQEGSGDVGQLARKLRKAHEGNPRVETQVSSLVRALEKDDRSVASVGSTELRDWRTKSSMERALRPVRSLHRGRHSEDHETRLQRLRSMPIPLVRNRS 924
            VPTALRFDD+D P     A  ++S+GKPPLPP++   R R + +     T  P+R++D   S  + + P+D S +EEYASISERGERVA AFERLGKQT EY ++PS+LAGGLSPKE++IPLIV++MRQHRSDPKVADRALTILRRLTVSENCR+CIGENGGIEAVVEIMR+HSLR+GIQTQGCLTLANLAFRNR NKEAVMKC XXXXXXXXXXXXXXXXXXXXXXXXXXXX TNRSDAGEQETSVASGAVEVLL+ALERYI SETVQ+NALIALTNIASRSPYGMERLRTAGGI+VLVS+L++NV S++L+EVGMSLTRVV            XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    +MNECTTASPDGVCYFLKALCNATFDSMASK  AGR GA+EATLRI+S+ +YKE GRVVEDACRLLRNLL+GV QNQRN+LKHRG  +VLD ARVHGEALAGVAEHSVAIFV+MAA+RGF SQ+QEGSGD+ QLAR+LRKAHEGNPRVETQV++L+RALE D+RSVAS+GS++LRDW  KSS+ERALRPVRSLHRGR  ++ E RLQRLRSMP+PL RNRS
Sbjct:    3 VPTALRFDDIDSPSAIPPAPPNTSHGKPPLPPARNIHRPRTRASPPLRTTQSPERQEDVASS-RDASPPIDTSLSEEYASISERGERVAAAFERLGKQTYEYQDSPSDLAGGLSPKEVIIPLIVEAMRQHRSDPKVADRALTILRRLTVSENCRKCIGENGGIEAVVEIMRSHSLRAGIQTQGCLTLANLAFRNRTNKEAVMKCSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTNRSDAGEQETSVASGAVEVLLTALERYICSETVQSNALIALTNIASRSPYGMERLRTAGGIEVLVSTLQQNVRSEKLSEVGMSLTRVVVEDDRNKELFGQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVVNIMNECTTASPDGVCYFLKALCNATFDSMASKIFAGRSGAIEATLRIMSEEAYKEVGRVVEDACRLLRNLLDGVVQNQRNLLKHRGIAVVLDVARVHGEALAGVAEHSVAIFVSMAANRGFASQVQEGSGDINQLARRLRKAHEGNPRVETQVNTLIRALEHDERSVASLGSSDLRDWSNKSSLERALRPVRSLHRGRSGDEQEKRLQRLRSMPLPLGRNRS 609          
BLAST of Ggra3529.t1 vs. uniprot
Match: R7QFR9 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QFR9_CHOCR)

HSP 1 Score: 367 bits (943), Expect = 4.510e-112
Identity = 258/546 (47.25%), Postives = 332/546 (60.81%), Query Frame = 0
Query:  386 LDNSPAEEYASISERGERVAIAFERLGKQTDEYPETPSELA--GGLSPKEILIPLIVDSMRQHRSDPKVADRALTILRRLTVSENCRRCIGENGGIEAVVEIMRAHSLRSGIQTQGCLTLANLAFRNRNNKEAVMKCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFTNRSDAGEQETSVASGAVEVLLSALERYIGSETVQNNALIALTNIASRSPYGMERLRTAGGIQVLVSSLKENVHSQRLAEVGMSLTRVVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVMNECTTASPDGVCYFLKALCNATFDSMASKTLAGRCGAVEATLRIISDSSYKEAGRVVEDACRLLRNLLEGVSQNQRNMLKHRGTVLVLDAARVHGEALAGVAEHSVAIFVNMAASRGFISQLQEGSGDVGQLARKLRKAHEGNPRVETQVSSLVRALEK--DDRSVASVGSTELRD-----WR---TKSSMERALRPVRSLHRGRHSEDHE-TRLQRLRSMPIP 918
            LD+SP E Y S ++R ER+A A ER+ K    +  +  E A     SPK  +IPLIVD++ QH  DPKVAD+ LT LRRLTV   CRR IGE GG+EA+VE+MRAHSLR  IQTQ CL LANLA++   NK A M  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXFTN +  GEQ+ SV +GAVEVL++ALE+Y  S  VQ   +IALTNIA+ SP GMERLR+AGG+Q +++S+  N+ S +L+E+ +S  +V+                                                                 M +  ++  +     LKAL N+T+DS+A+KTLAGR GAVEA L +IS  +++    VVEDACR+LRNL +GV  N R +++  G V VL+AAR HG + AGVAEH VAIFVN++A++    QL+EG  D   +AR+L+ AH GN RV  QV+ L+  LE   DD    S  S E R+     WR   T+ S E +LR  +SL +    E  + TRLQRLRS+P+P
Sbjct:   88 LDSSPLEHYESKTQRSERIATALERIAKNAAFFGLSAEENACPSDTSPKTAVIPLIVDAITQHVRDPKVADQGLTTLRRLTVDPVCRRTIGECGGVEAIVEVMRAHSLRVRIQTQACLALANLAYKCPENKRAFMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFTNGAIEGEQDASVTAGAVEVLVTALEQYPKSNVVQQQCMIALTNIAAASPLGMERLRSAGGVQAVIASMHNNIRSSQLSEIALSCAKVLVEEESNQKIFGHDGGIEAITMVLDEHRGHTAIAVRGCAAFRQLAFQRENRDLLGRCGSIRAIITAMMDTASSKAETAAVLLKALSNSTYDSLANKTLAGRLGAVEAALHLISPDTFQSNTGVVEDACRVLRNLADGVQLNHRLLIEKGGVVAVLEAAREHGTSSAGVAEHCVAIFVNLSANQSLAEQLKEGGKDFAAMARELQLAHPGNDRVYKQVADLLSILEPKVDDGEPVSTESVEWRESKSCTWRETATQISFEESLRSSKSLRKTFSKEGEQLTRLQRLRSLPLP 633          
The following BLAST results are available for this feature:
BLAST of Ggra3529.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3J1N22.110e-25778.45Protein aardvark n=1 Tax=Gracilariopsis chorda Tax... [more]
R7QFR94.510e-11247.25Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000225ArmadilloSMARTSM00185arm_5coord: 466..508
e-value: 8.4
score: 13.8
coord: 554..597
e-value: 1.8
score: 17.6
coord: 642..684
e-value: 220.0
score: 2.8
coord: 510..552
e-value: 180.0
score: 3.5
coord: 685..728
e-value: 170.0
score: 3.7
coord: 730..774
e-value: 35.0
score: 9.1
IPR000225ArmadilloPROSITEPS50176ARM_REPEATcoord: 477..522
score: 10.2724
IPR011989Armadillo-like helicalGENE3D1.25.10.10coord: 399..628
e-value: 5.9E-30
score: 106.7
IPR011989Armadillo-like helicalGENE3D1.25.10.10coord: 629..871
e-value: 1.6E-17
score: 65.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 122..170
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 332..346
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 190..206
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 207..234
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..19
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 891..911
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 891..924
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 48..62
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 249..301
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..387
NoneNo IPR availablePANTHERPTHR22895UNCHARACTERIZEDcoord: 695..858
coord: 437..600
coord: 609..686
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 581..865
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 435..619

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000059_piloncontigtig00000059_pilon:846464..849238 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3529.t1Ggra3529.t1Gracilaria gracilis GNS1m malemRNAtig00000059_pilon 846464..849238 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra3529.t1 ID=Ggra3529.t1|Name=Ggra3529.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=925bp
MQRAPLAGSQSSRTLMDQQTAPPARVRRRLRFGSLLSRRFSHLFPGRKDS
STHPSSSRRPSSPAVAPAAHGEPSTPTLPHIHRSPPASPENVRSEPSHRL
SSLLAAARSAADNDDDSARSGDRSLTASSRKSVPLSPLTGTSPSDSTVGS
STPWYRKDEQSPSPVSSPPSALTVRFEADRIKPSDHLLSQPPLPTSPSPT
PADNGPNTTPPVTFSPDDSQIQSPMLSPQSPELQYAPSPARAPVHPDTLN
EESRQSLVSSDSDSDQSFPSAHNEISSPNVKDPTPTIFSQPHSYNQRPVH
RRSPLRSSHLRSPKSIGVPTALRFDDLDPQETTAAKASSSNGKPPLPPSK
AAQRQRPKVTILETPTTIPDRRDDGPPSVLETAAPLDNSPAEEYASISER
GERVAIAFERLGKQTDEYPETPSELAGGLSPKEILIPLIVDSMRQHRSDP
KVADRALTILRRLTVSENCRRCIGENGGIEAVVEIMRAHSLRSGIQTQGC
LTLANLAFRNRNNKEAVMKCSGLKVVVGALSVHPNVEQIQAWGCLAIRNF
TNRSDAGEQETSVASGAVEVLLSALERYIGSETVQNNALIALTNIASRSP
YGMERLRTAGGIQVLVSSLKENVHSQRLAEVGMSLTRVVAEDDRNKELFG
QAGGIQAMTAIMDTHRGHLAISVKGCAAARHLAFRRKNREIMGSCGIIRS
IVCVMNECTTASPDGVCYFLKALCNATFDSMASKTLAGRCGAVEATLRII
SDSSYKEAGRVVEDACRLLRNLLEGVSQNQRNMLKHRGTVLVLDAARVHG
EALAGVAEHSVAIFVNMAASRGFISQLQEGSGDVGQLARKLRKAHEGNPR
VETQVSSLVRALEKDDRSVASVGSTELRDWRTKSSMERALRPVRSLHRGR
HSEDHETRLQRLRSMPIPLVRNRS*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000225Armadillo
IPR011989ARM-like
IPR016024ARM-type_fold