Ggra2184.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra2184.t1
Unique NameGgra2184.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length505
Homology
BLAST of Ggra2184.t1 vs. uniprot
Match: A0A2V3J069 (SNF1-related protein kinase regulatory subunit beta-2 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J069_9FLOR)

HSP 1 Score: 202 bits (515), Expect = 7.090e-54
Identity = 125/300 (41.67%), Postives = 157/300 (52.33%), Query Frame = 0
Query:    6 VPTTFEYVAERDHESVLIKGSWDRWQSFAALQKTDDNPLLWQVHITLNPGTVLFKFVVDNDWVYAPNYKHISDGFGGMNNERHIEPLKGIVSAEPEPQGNTQPT-----DSEPAIPSTYASVREVADVDFRHHRQLLPSVHHSHD------------EAIASEHEQSETQTD-----SAQQPDEPAQSAIPTLSK-----VEGVQHTKSNPPSGAVTFEYPCEKPYENVSVRGSWDGWKVPHPLVLSEEHGTWSADINLPVGSFLFKFIVDEQWTHSAEYEVQSDDFGGFNNVINVTASD 278
            VP T EY A  +H SV IKGSWD W S   LQ+       W V I LNPG  LFKF+VD+ W YAPNYK  SD FGG NN  H+  L+       EPQ  TQPT      SE  + +T  S +   +    H   L PS   SH             +   S+ + SE QT      S Q+    +   +  LS+     +        +P    V+F Y  +  + +VSV+GSWD W+   PLV S EHG W ++  LP GSFLFKF+VD +WTHS +YEVQSD FGG+NNVINV  S+
Sbjct:    7 VPVTIEYFANDEHRSVAIKGSWDNWHSLTPLQRNQHESTSWHVDINLNPGVFLFKFIVDDHWQYAPNYKRQSDNFGGYNNVLHV--LE-------EPQHETQPTHDNLPQSEAHLQATLGSGKAEPENRDNHKGALTPSHLQSHIAREQSKQLHSSLQQYPSDSDNSELQTPHNTAFSEQEEQTHSAEFVDALSQQVSHMLNASSKNACDPKRAVVSFVYHVDARHADVSVKGSWDQWQKQLPLVPS-EHGYWHSNTALPPGSFLFKFVVDGKWTHSTQYEVQSDGFGGYNNVINVKESE 296          
BLAST of Ggra2184.t1 vs. uniprot
Match: A0A2T7NXR2 (AMPK1_CBM domain-containing protein n=1 Tax=Pomacea canaliculata TaxID=400727 RepID=A0A2T7NXR2_POMCA)

HSP 1 Score: 62.4 bits (150), Expect = 7.040e-7
Identity = 33/88 (37.50%), Postives = 51/88 (57.95%), Query Frame = 0
Query:  187 SNPPSGAVTFEYPCEKPYENVSVRGSWDGWKVPHPLVLSEEHGTWSADINLPVGSFLFKFIVDEQWTHSAEYEVQSDDFGGFNNVINV 274
            S P   A T  +  E   ENV V GS++ W     +VL++    +SA ++LPVG +L+K+IVDEQW  +    ++ D+ G  NN ++V
Sbjct:  272 SAPSQDAKTALFQWENGGENVQVSGSFNDWG--EKIVLTKNGDVFSASLDLPVGEYLYKYIVDEQWVINKNQPIKCDENGQENNFLSV 357          
BLAST of Ggra2184.t1 vs. uniprot
Match: A0A7S2BN75 (Hypothetical protein (Fragment) n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2BN75_9EUKA)

HSP 1 Score: 58.2 bits (139), Expect = 1.170e-6
Identity = 29/88 (32.95%), Postives = 47/88 (53.41%), Query Frame = 0
Query:    3 PSLVPTTFEYVAERDHESVLIKGSWDRWQSFAALQKTDDNPLLWQVHITLNPGTVLFKFVVDNDWVYAPNYKHISDGFGGMNNERHIE 90
            P  VPT  ++       +V + GS++ W     L+++  +   W V + L PGT  +KF+VDN+W YAP+   + D  G +NN   +E
Sbjct:   51 PEPVPTILQW--SMGANAVYVTGSFNHWGERIPLRRSGGD---WVVCLNLLPGTYQYKFIVDNEWRYAPDQPTVRDEMGNINNCLTVE 133          
BLAST of Ggra2184.t1 vs. uniprot
Match: A0A3Q7HD03 (AMPKBI domain-containing protein n=13 Tax=Solanoideae TaxID=424551 RepID=A0A3Q7HD03_SOLLC)

HSP 1 Score: 59.7 bits (143), Expect = 3.330e-6
Identity = 38/116 (32.76%), Postives = 64/116 (55.17%), Query Frame = 0
Query:    6 VPTTFEYVAERDHESVLIKGSWDRWQSFAALQKTDDNPLLWQVHITLNPGTVLFKFVVDNDWVYAPNYKHISDGFGGMNNERHIEPLKGIVSAEPEPQGNTQPTDSEPAIPSTYAS 121
            +PT   + +   HE V I+GSWD W++   LQ+TD +  + +V  +   G   ++F+VD  W YAP+Y +  D  G + N   +  L+ I+   PE   NT  +D+ P+  S+Y++
Sbjct:   99 IPTMITW-SHGGHE-VAIEGSWDGWKTKDFLQRTDKDFTVMKVFPS---GVYHYRFIVDGQWRYAPDYPYERDDTGNVFN---VLDLQDII---PEVLNNTNWSDAPPSPESSYSN 203          
BLAST of Ggra2184.t1 vs. uniprot
Match: A0A4D9BAU2 (AMPKBI domain-containing protein n=4 Tax=Salvia splendens TaxID=180675 RepID=A0A4D9BAU2_SALSN)

HSP 1 Score: 59.7 bits (143), Expect = 4.960e-6
Identity = 43/117 (36.75%), Postives = 62/117 (52.99%), Query Frame = 0
Query:  163 QQPDE---PAQSAIPTLSKVEGVQHTKSNPPSGAVTFEYPCEKPYENVSVRGSWDGWKVPHPLVLSEEHGTWSADINLPVGSFLFKFIVDEQWTHSAEYEVQSDDFGGFNNVINVTA 276
            Q+PDE   P+ S + T S  E V + +  P    +T+ Y  ++    VSV GSWDGWK   PL  S +  T      LP G + ++F+VD QW HS +   + DD G   NV+++ A
Sbjct:  103 QRPDELNIPSPSWMQTSSGYEDVYNEQGIPTM--ITWGYGGKE----VSVEGSWDGWKSRKPLQRSGKDFTIMKV--LPSGVYQYRFLVDGQWRHSPDLPWEQDDSGNAYNVLDLQA 211          
BLAST of Ggra2184.t1 vs. uniprot
Match: SNF1-related protein kinase regulatory subunit beta-2-like n=1 Tax=Ipomoea triloba TaxID=35885 RepID=UPI00125D6348 (SNF1-related protein kinase regulatory subunit beta-2-like n=1 Tax=Ipomoea triloba TaxID=35885 RepID=UPI00125D6348)

HSP 1 Score: 58.9 bits (141), Expect = 5.830e-6
Identity = 36/101 (35.64%), Postives = 53/101 (52.48%), Query Frame = 0
Query:   21 VLIKGSWDRWQSFAALQKTDDNPLLWQVHITLNPGTVLFKFVVDNDWVYAPNYKHISDGFGGMNNERHIEPLKGIVSAEPEPQGNTQPTDSEPAIPSTYAS 121
            V ++GSWD WQ+   LQ+TD +   + V   L  G   F+F+VD +W YAP++ H  D  G + N   +  LK ++   PE   N     S P+  S+Y S
Sbjct:  106 VAVEGSWDDWQTRDYLQRTDKD---FSVMKMLPSGIYHFRFIVDGEWRYAPDFPHECDDMGRVFN---VLDLKDVI---PEVLNNICWPKSPPSPASSYNS 197          
BLAST of Ggra2184.t1 vs. uniprot
Match: SNF1-related protein kinase regulatory subunit beta-2-like isoform X1 n=2 Tax=Ipomoea nil TaxID=35883 RepID=UPI000901E6EB (SNF1-related protein kinase regulatory subunit beta-2-like isoform X1 n=2 Tax=Ipomoea nil TaxID=35883 RepID=UPI000901E6EB)

HSP 1 Score: 58.2 bits (139), Expect = 9.700e-6
Identity = 38/118 (32.20%), Postives = 56/118 (47.46%), Query Frame = 0
Query:   21 VLIKGSWDRWQSFAALQKTDDNPLLWQVHITLNPGTVLFKFVVDNDWVYAPNYKHISDGFGGMNNERHIEPLKGIVSAEPEPQGNTQPTDSEPAIPSTYASVREVADVDFRHHRQLLP 138
            V ++GSWD WQ+   LQ+TD +   + V   L  G   F+F+VD +W YAP++ H  D  G + N   +  LK +V   PE   N       P  P++  +    +  DF      LP
Sbjct:   99 VAVEGSWDDWQTRDYLQRTDKD---FTVMKMLPSGIYHFRFIVDGEWRYAPDFPHDRDHMGRVFN---VLDLKDVV---PEVVVNNMCLPESPPSPASSYNSAPFSSGDFNEKLPDLP 207          
The following BLAST results are available for this feature:
BLAST of Ggra2184.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A2V3J0697.090e-5441.67SNF1-related protein kinase regulatory subunit bet... [more]
A0A2T7NXR27.040e-737.50AMPK1_CBM domain-containing protein n=1 Tax=Pomace... [more]
A0A7S2BN751.170e-632.95Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
A0A3Q7HD033.330e-632.76AMPKBI domain-containing protein n=13 Tax=Solanoid... [more]
A0A4D9BAU24.960e-636.75AMPKBI domain-containing protein n=4 Tax=Salvia sp... [more]
SNF1-related protein kinase regulatory subunit beta-2-like n=1 Tax=Ipomoea triloba TaxID=35885 RepID=UPI00125D63485.830e-635.64SNF1-related protein kinase regulatory subunit bet... [more]
SNF1-related protein kinase regulatory subunit beta-2-like isoform X1 n=2 Tax=Ipomoea nil TaxID=35883 RepID=UPI000901E6EB9.700e-632.20SNF1-related protein kinase regulatory subunit bet... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10Immunoglobulinscoord: 2..91
e-value: 1.2E-17
score: 65.5
coord: 185..280
e-value: 1.1E-20
score: 75.2
IPR032640AMP-activated protein kinase, glycogen-binding domainPFAMPF16561AMPK1_CBMcoord: 205..278
e-value: 1.1E-17
score: 64.0
coord: 6..90
e-value: 3.2E-14
score: 52.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 133..153
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 94..120
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 133..188
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 325..339
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 340..415
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 486..504
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 302..504
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 154..188
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 305..321
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 100..116
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 451..473
NoneNo IPR availablePANTHERPTHR103435'-AMP-ACTIVATED PROTEIN KINASE , BETA SUBUNITcoord: 5..173
coord: 149..476
NoneNo IPR availableCDDcd02859E_set_AMPKbeta_like_Ncoord: 194..274
e-value: 2.56056E-25
score: 97.2844
NoneNo IPR availableCDDcd02859E_set_AMPKbeta_like_Ncoord: 7..85
e-value: 2.92657E-20
score: 83.032
IPR014756Immunoglobulin E-setSUPERFAMILY81296E set domainscoord: 5..89
IPR014756Immunoglobulin E-setSUPERFAMILY81296E set domainscoord: 192..274

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000900_piloncontigtig00000900_pilon:576438..578070 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2184.t1Ggra2184.t1Gracilaria gracilis GNS1m malemRNAtig00000900_pilon 576438..578070 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra2184.t1 ID=Ggra2184.t1|Name=Ggra2184.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=505bp
MAPSLVPTTFEYVAERDHESVLIKGSWDRWQSFAALQKTDDNPLLWQVHI
TLNPGTVLFKFVVDNDWVYAPNYKHISDGFGGMNNERHIEPLKGIVSAEP
EPQGNTQPTDSEPAIPSTYASVREVADVDFRHHRQLLPSVHHSHDEAIAS
EHEQSETQTDSAQQPDEPAQSAIPTLSKVEGVQHTKSNPPSGAVTFEYPC
EKPYENVSVRGSWDGWKVPHPLVLSEEHGTWSADINLPVGSFLFKFIVDE
QWTHSAEYEVQSDDFGGFNNVINVTASDSILGDTCEFSDALDTVLQPRSG
EVGSETLSARKEEDVYPVENLNASDHEDPTFNPISPQARENIEEENHAEQ
QGEVHPELEQEPSIDQEPKSVGSDKPEETEPTPHVSDVEDKLEAKERSIA
EETYLSQKEDSPETEQAESTNVIPDSEAVNGDHDAPNSGSELGSRVPVQD
LDASSEEHVEADQAEKSNGEKLSDAEEVLVGIINESGGREKEEERNDGRG
CSIC*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013783Ig-like_fold
IPR032640AMPK1_CBM
IPR014756Ig_E-set