Ggra2157.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra2157.t1
Unique NameGgra2157.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length682
Homology
BLAST of Ggra2157.t1 vs. uniprot
Match: A0A2V3J039 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J039_9FLOR)

HSP 1 Score: 146 bits (369), Expect = 2.590e-35
Identity = 75/161 (46.58%), Postives = 109/161 (67.70%), Query Frame = 0
Query:  508 ISRQASVDVLYWLVLKEKEGIKISRILLHAINFIVLLVDSLLSFRMVFHLTYVFVTIGVVATWVIYAWVRYAVTKQWIHHVLDYRIVGRGRAATVHIIILLTFFAIALLLLLLNRLSRLNFVTRRIQSIVADELQISCVSNTTDEENPKDGDLDYVLFETE 668
            +S    +DVLYW++LK++    ISR LLH INF++L +DS LS ++VFHL YVF+   +V  W++  WVRYA T+QW + VL+++ VG  RA  VH  ++LTF A A ++L +NR++R+ F+ RRI SI ADE ++   S   D ENP D +L+ V  ET+
Sbjct:  170 LSLALGIDVLYWVLLKDEHDEPISRALLHIINFVLLFIDSFLSLKLVFHLMYVFLGAAIVVAWLVSTWVRYAFTRQWSYQVLNFQAVGASRAIAVHFAMVLTFLATATIILFINRINRVEFIRRRIDSIAADEFEMCVRSINIDPENPPDDELERVFVETQ 330          
BLAST of Ggra2157.t1 vs. uniprot
Match: R7QCT6 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QCT6_CHOCR)

HSP 1 Score: 117 bits (292), Expect = 3.020e-24
Identity = 116/406 (28.57%), Postives = 186/406 (45.81%), Query Frame = 0
Query:  114 LVGHLVFFSLHADFNFTEYLTWNYLALTIALLLALTCSLLDLIHD-------HPDQQDNENSPSLNSNHQHILDDVERQSRISSSPSSAPEPKWLLFFTRITVPLYQLAVTATLFGAVVFWAAVYPNASIPPTYALLAQAVAAPAIALTDFFLSFRMNFRLIYLVPYMLYNAAYIAVAYTL--TERAYLFVFLRRDASRSAFLAKAAGLAAGSLFTAILLYFITAL-------RSLRSTKSLPDAISARSKSRIVEDRAESASASGASSHHSDLSQLGLRRVPS----NSFYGSAEFVHVENEERLE--QSRSLSARDRSSVPIN---LGGNSSARSSFFRMSSARLTASLSGGSSGEGRGLVRNTSTSSMWDD--MEQPPPKTEDEVFSMPACYKAGKPADVVRL 492
            LV H+V+F+L + F+   Y TW Y  L +A + A+ CSL+ L+ +         D++D            H  D +  Q  +    +         F  ++TVPLYQ+ VT ++FGAVVFWAA+ P  S   +Y LLA    APA+A+ D  LS  + FRL+Y++   L+NAAY    Y    T+  Y++ F+     + AF+AK  GLA  S+   + +Y +TA        RS        D   + +  + V D+     +        D+     R + +    +  +   E V  + +E+ +     S+  R+R SVP     L  + S R  +   ++ RL   +S  S  E     R  S   +W++  ++      E E F+MPA Y  G+  +VV+L
Sbjct:    2 LVSHMVYFTLTSAFSPRLYATWAYAGLALAFVGAVFCSLMQLLREDIVKEAMRVDEEDGG----------HAADTLLGQEPVDRGLAR--------FVAQVTVPLYQVFVTVSVFGAVVFWAAILPVQSADISYPLLALNAIAPAVAVLDVLLSMSIEFRLVYVLLVALFNAAYAGTLYVFYKTDGIYVYNFINPSQEKGAFIAKTTGLAVASIVAGLFVYSVTAFSGLMFRRRSAEKKTKKGDKDDSTADVKSVSDKDVELESQVTLDSSQDVQSEEKRNISAPTEDSHEFDEDEVVVADMDEKSKGNSKSSMEKRNRHSVPTQSPELARSGSNRRWYRSSTAGRLQGVISLSSLAEEAVEDRPIS---VWEEKGVDSAHAPQESEYFTMPAAYNGGR-NEVVKL 385          
BLAST of Ggra2157.t1 vs. uniprot
Match: R7QCV6 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QCV6_CHOCR)

HSP 1 Score: 67.4 bits (163), Expect = 4.440e-9
Identity = 43/126 (34.13%), Postives = 73/126 (57.94%), Query Frame = 0
Query:  514 VDVLYWLVLKEKEGIK-ISRILLHAINFIVLLVDSLLSFRMVFHLTYVFVTIGVVATWVIYAWVRYAVTKQWIHHVLDYRIVGRGRAATVHIIILLTFFAIALLLLLLNRLSRLNFVTRRIQSIVA 638
            +DV++W +L + +G    +++  HA+N + +L+D LLS RM F L Y  V I     ++ +AW+R+A+T  W++  LDY     G     +  +LL  F  A +++L+++LSR   VT R +S  A
Sbjct:   73 LDVVFWTILFDFDGSPTFAQLSQHAVNLVFVLLDLLLSARMQFKLLYGVVFIAYTIGYLTFAWIRFAITDDWVYGFLDYTDQSAGLTVAYYFGVLLWAFVAAFIMILVSKLSRCPCVTARKKSTEA 198          
The following BLAST results are available for this feature:
BLAST of Ggra2157.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3J0392.590e-3546.58Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7QCT63.020e-2428.57Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
R7QCV64.440e-934.13Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..71
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..15
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 33..66
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 439..461
NoneNo IPR availablePANTHERPTHR12242UNCHARACTERIZEDcoord: 104..360
NoneNo IPR availablePANTHERPTHR12242UNCHARACTERIZEDcoord: 514..624
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 104..123
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 557..580
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 157..208
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 135..156
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 533..551
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 124..134
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 209..230
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 621..681
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 261..266
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 552..556
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 231..241
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 288..306
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 307..327
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 267..287
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 581..599
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 242..260
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 600..620
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 328..532
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..103
NoneNo IPR availableTMHMMTMhelixcoord: 135..157
NoneNo IPR availableTMHMMTMhelixcoord: 103..125
NoneNo IPR availableTMHMMTMhelixcoord: 267..289
NoneNo IPR availableTMHMMTMhelixcoord: 304..326
NoneNo IPR availableTMHMMTMhelixcoord: 599..621
NoneNo IPR availableTMHMMTMhelixcoord: 557..579
NoneNo IPR availableTMHMMTMhelixcoord: 241..260
NoneNo IPR availableTMHMMTMhelixcoord: 209..231
IPR039860Protein rolling stonePANTHERPTHR12242:SF1IP08657P-RELATEDcoord: 514..624
IPR039860Protein rolling stonePANTHERPTHR12242:SF1IP08657P-RELATEDcoord: 104..360

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000900_piloncontigtig00000900_pilon:461043..464913 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2157.t1Ggra2157.t1Gracilaria gracilis GNS1m malemRNAtig00000900_pilon 461043..464913 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra2157.t1 ID=Ggra2157.t1|Name=Ggra2157.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=682bp
MFPPPRLSSSVSSDHPLRMPPPPPLTDASFVEQPTAPPLSTVASSRPISS
PPSLPDMNASSDSDSVHSASPKKHPQLFHAPLLFQPHAFTEASRSACLPL
RAILILRLFPVAALVGHLVFFSLHADFNFTEYLTWNYLALTIALLLALTC
SLLDLIHDHPDQQDNENSPSLNSNHQHILDDVERQSRISSSPSSAPEPKW
LLFFTRITVPLYQLAVTATLFGAVVFWAAVYPNASIPPTYALLAQAVAAP
AIALTDFFLSFRMNFRLIYLVPYMLYNAAYIAVAYTLTERAYLFVFLRRD
ASRSAFLAKAAGLAAGSLFTAILLYFITALRSLRSTKSLPDAISARSKSR
IVEDRAESASASGASSHHSDLSQLGLRRVPSNSFYGSAEFVHVENEERLE
QSRSLSARDRSSVPINLGGNSSARSSFFRMSSARLTASLSGGSSGEGRGL
VRNTSTSSMWDDMEQPPPKTEDEVFSMPACYKAGKPADVVRLPQAPAADS
AKQIPRVISRQASVDVLYWLVLKEKEGIKISRILLHAINFIVLLVDSLLS
FRMVFHLTYVFVTIGVVATWVIYAWVRYAVTKQWIHHVLDYRIVGRGRAA
TVHIIILLTFFAIALLLLLLNRLSRLNFVTRRIQSIVADELQISCVSNTT
DEENPKDGDLDYVLFETEIKSDAGKRFTSGT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR039860Rost