Ggra2022.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra2022.t1
Unique NameGgra2022.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length797
Homology
BLAST of Ggra2022.t1 vs. uniprot
Match: A0A2V3IIU5 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IIU5_9FLOR)

HSP 1 Score: 278 bits (712), Expect = 2.710e-82
Identity = 189/464 (40.73%), Postives = 240/464 (51.72%), Query Frame = 0
Query:   16 QNDIDCIDILAHRLAFPDHVVLQARFIHANAFPMHPDPYTSACALYIASIAIHAEQIPLHPLERVLRAADAQ-------------PQLLAPQSDSDSDIEDEIQPVQPAAASPTDRRVHSASVAFMVSAHVWRQLCFLMDSGLLHDHPRVLQLAWLFFLVARSSLTPPAECSLTYEQAHHVMLASVVHAGLIAGEDPGHAIFRATCAVPNELRHYRRALDTQLHRHLHAILPLFPRPDSQLEVICQDLDALYAQQLTGYKDRVATDERIFLHAPQLTAFTAQPLANPLGPVSARKAASNSEDTPSAAMSTANGSSAXXXXXXXXPQPQASNGPSTTNHVMGATQPQAQSTPQATSALGRKRALDEDVXXXXXXXAITPRPQRRQRRADDEPVPPSAARPPTPARSTPARRARSRAAMLTPRSSPN-FSRYALSTRPDALDALATVAAISPRYV-----TRPPTP 460
            Q++ DCID L HRLA PDH+   A +IH  A P   DPYT+ACALY+ASIA  A+QIP  PL R+L AA +              P ++             + P      +P  RRVH +  AFMVSAHVWR+L +L+D  LL +HP V +L WLFF+VA+++++ P +C+LT+ QA+H++LA ++ +G I   DP  A+FR TC VP+EL+HY+RALD  LH+ +   LP  P  D  L+ ICQ LD  Y  QLT  K R+ATDERIFLHAP L A  + P++                                         P  S  P          QP A +TP                XXXXXXX                   PS+ARPPTPAR       R R+A  TP S+P  FSRYA STR DALDALATVAA++P        T PP P
Sbjct:   20 QHEPDCIDFLVHRLALPDHLATLAHYIHNTALPTASDPYTAACALYVASIAFRADQIPQLPLSRLLGAASSDRIPLRITTHFTHNPTMVVDSERHSPTSPQHLTPPSTPPEAPLVRRVHLSHTAFMVSAHVWRKLRYLIDRNLLVNHPSVPRLPWLFFIVAKATISSPTDCNLTHVQAYHLLLACLLQSGFIEAPDPERALFRVTCVVPSELQHYKRALDDLLHKCIRTRLPFLPHSDQVLQQICQQLDHAYDAQLTNVKHRLATDERIFLHAPNLAAVGSPPIS-----------------------------------------PVFSASPLNQ-------QPSASTTPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSH----------PSSARPPTPAR-------RPRSASHTPMSTPTRFSRYAASTRADALDALATVAAVTPHSAASLPATPPPQP 418          
BLAST of Ggra2022.t1 vs. uniprot
Match: A0A2V3IIT0 (Retinoblastoma-associated protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IIT0_9FLOR)

HSP 1 Score: 239 bits (610), Expect = 1.040e-65
Identity = 117/184 (63.59%), Postives = 141/184 (76.63%), Query Frame = 0
Query:  507 LRKVTGGGRPLLAIIDVGRRFSAALCTVLRDTNSDRHVREVLAVYFAAMEGILEKEKRRLSQQPEKFLSNVLHNYVLHKSFLTFAWETTAAAHGRRDLQVFAVAYRAFDVSPFELTKALDTFCMLVPQMPRCLVHHLVCCDARILEWMAWRSKSPLVQVLQAYNRDLIMQQNRTAPSTQEASPE 690
            +R + G  RPL A+ID+GRR+S ALC VL++ N   + R  LAVYF A+EGIL+KE RRLS Q  KF + VL N +LHKSFLTFAWETTAAA+G++DL VF VAYRAF+VSPFELTKALD FC LVPQMPR LV+H++ CDARILEWMAWR  SPLV VLQAY RD +  Q  +  ++   SP+
Sbjct:    1 MRTLAGSPRPLKAVIDLGRRYSDALCNVLKEFNVPHYKRAALAVYFYAIEGILQKEHRRLSNQLHKFSAKVLQNAILHKSFLTFAWETTAAAYGKKDLNVFTVAYRAFNVSPFELTKALDAFCTLVPQMPRSLVNHMINCDARILEWMAWRHDSPLVNVLQAYGRDRLRMQQSSGQASAPGSPQ 184          
BLAST of Ggra2022.t1 vs. uniprot
Match: A0A7S3A3H1 (Hypothetical protein n=3 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3A3H1_9RHOD)

HSP 1 Score: 105 bits (262), Expect = 1.510e-19
Identity = 77/241 (31.95%), Postives = 122/241 (50.62%), Query Frame = 0
Query:  438 DALDALATVAAISPR-----YVTRPPTPNVAASPTTADDSRTMRWITTLTASRPETN--SESCLTCPLEQVSTTDGLRKVTGGGRPLLAIIDVGRRFSAALCTVLRDT----NSDRHVREVLAVYFAAMEGILEKEKRRLSQQPEKFLSNVLHNYVLHKSFLTFAWETTAAAHGRRDLQVFAVAYRAFDVSPFELTKALDTFCMLVPQMPRCLVHHLVCCDARILEWMAWRSKSPLVQVLQ 667
            DALDALA VA +SPR      + + P P +  +P +     ++ W+ +L  +RPE    S    +   E++ + D    + G  + +L              T LR       +++ +RE  AVYFA++EGIL  E++RL       L  + HN   H + L  + ET + A+GRR+   F      FD+ PF+LTK +++F    P +P+ +  HL+ C+ RILE +AW   S LV+ L+
Sbjct:  353 DALDALAAVAHVSPRSPCETIMQKGPKP-IPQTPVSVSIV-SVTWLKSLADARPENAGFSPPRQSQHFERMLSRDSWLAICGRAQKMLG-------------TYLRKNYGTITANQKIRETTAVYFASLEGILRAEEKRLKTSN---LDALAHNGTFHCALLAISCETASVAYGRREFAPFPKILDDFDIEPFDLTKVVESFIKHTPGLPKAIGRHLLRCEERILEKLAWMPGSALVRSLE 575          
BLAST of Ggra2022.t1 vs. uniprot
Match: A0A7S0BJ67 (Hypothetical protein (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BJ67_9RHOD)

HSP 1 Score: 101 bits (251), Expect = 1.640e-18
Identity = 72/237 (30.38%), Postives = 115/237 (48.52%), Query Frame = 0
Query:  438 DALDALATVAAISPRY---VTRPPTPNVAASPTTADDSRTMRWITTLTASRPETNSESCLTCPLEQVSTTDGLRKVTGGGRPLLAIIDVGRRFSAALCTVLRD----TNSDRHVREVLAVYFAAMEGILEKEKRRLSQQPEKFLSNVLHNYVLHKSFLTFAWETTAAAHGRRDLQVFAVAYRAFDVSPFELTKALDTFCMLVPQMPRCLVHHLVCCDARILEWMAWRSKSPLVQVLQ 667
            DALDALA VA +SPR     T    P        +    ++ W+ +L  +RPE    S    P +Q    + +             + +  R    LCT  R       +++ +RE  AVYF+++EGI+  E++RL       L  +++N   H++ L  + ET + A+GRRD   F       D+ PF++TK +++F    P +P+ +  HL+ C+ RILE +AW   S LV  L+
Sbjct:  104 DALDALAAVAHVSPRSPCETTMQKVPKPIPQTPVSVSIVSVTWLKSLADTRPENAGFS----PPKQSQHFERMLSRDSW-------VAICSRAQKMLCTYWRKHYGTITANQKIRETTAVYFSSLEGIMLAEEKRLKTSN---LDALVNNGTFHRALLAISCETASVAYGRRDFAPFPKILDDLDIEPFDMTKVVESFIKHTPSLPKAVGRHLLRCEERILEKLAWMPGSALVGSLE 326          
BLAST of Ggra2022.t1 vs. uniprot
Match: A0A7J7IG24 (Retinoblastoma-like n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IG24_9RHOD)

HSP 1 Score: 74.3 bits (181), Expect = 6.700e-10
Identity = 44/128 (34.38%), Postives = 68/128 (53.12%), Query Frame = 0
Query:  539 NSDRHVREVLAVYFAAMEGILEKEKRRLSQQPEKFLSNVLHNYVLHKSFLTFAWETTAAAHGRRDLQVFAVAYRAFDVSPFELTKALDTFCMLVPQMPRCLVHHLVCCDARILEWMAWRSKSPLVQVL 666
             + + + E LAVY+ A+E IL  E RR++     F++ +L     HK+ L  A ET  A++G RD   F     AFD+S F+  K +  + + V  +P      L  C   +L  +AW+S+SPLV+ L
Sbjct:  463 TAQQRMSEALAVYWHALESILNAEVRRMNGSLA-FVTKLLSVEPFHKALLLCAIETVCASYGIRDEIHFDHLLEAFDLSAFDFIKIIGAYVLNVENLPPQAKRRLAACQEYVLCVLAWQSESPLVRAL 589          
BLAST of Ggra2022.t1 vs. uniprot
Match: Q98966 (Retinoblastoma protein n=1 Tax=Notophthalmus viridescens TaxID=8316 RepID=Q98966_NOTVI)

HSP 1 Score: 72.0 bits (175), Expect = 3.470e-9
Identity = 39/119 (32.77%), Postives = 66/119 (55.46%), Query Frame = 0
Query:  552 FAAMEGILEKEKRRLSQQPEKFLSNVLHNYVLHKSFLTFAWETTAAAHG----RRDLQVFAVAYRAFDVSPFELTKALDTFCMLVPQMPRCLVHHLVCCDARILEWMAWRSKSPLVQVL 666
            +  ME +L+ E++RLS Q     SN+L+N   H+S L  + E   A +G      DL  F      F + P++  K +++F    P + R ++ HL  C+ RI+E +AWRS+SP+ +++
Sbjct:  434 YRVMEAMLKSEEKRLSVQN---FSNLLNNSAFHESLLACSIEVVMATYGSISRETDLS-FPWILEVFKIEPYDFYKVIESFIKDEPSLTREMIKHLESCEHRIMESLAWRSESPIYELI 548          
BLAST of Ggra2022.t1 vs. uniprot
Match: A0A8D0KMR8 (RB transcriptional corepressor 1 n=2 Tax=Salvator merianae TaxID=96440 RepID=A0A8D0KMR8_9SAUR)

HSP 1 Score: 72.0 bits (175), Expect = 3.510e-9
Identity = 47/160 (29.38%), Postives = 79/160 (49.38%), Query Frame = 0
Query:  526 RFSAALCTVLRDTNSDRHVREVLAVYFAAMEGILEKEKRRLSQQPEKFLSNVLHNYVLHKSFLTFAWETTAAAHGR------------RDLQVFAVAYRAFDVSPFELTKALDTFCMLVPQMPRCLVHHLVCCDARILEWMAWRSKSPLVQVL-QAYNRD 672
            +F+ A+     +  S R+ R  + +Y+  ME IL+ E++RLS       S +L+N   H S L  A E   A +G               +  F       ++  F+L K +++F    P + R ++ HL CC+ RI+E +AW+S SPL +++ Q+  RD
Sbjct:  423 KFAEAVGQGCAEIGSQRY-RLGVRLYYRVMESILKSEEKRLSIHN---FSKLLNNNAFHTSLLACALEVVIATYGTSRSASQNDSLNTETVLSFPWIINTLNLKAFDLYKVIESFIKAEPNLSREMIKHLECCEHRIMESLAWKSDSPLFELIKQSKERD 578          
BLAST of Ggra2022.t1 vs. uniprot
Match: A0A8D2INS4 (RB transcriptional corepressor 1 n=6 Tax=Varanus komodoensis TaxID=61221 RepID=A0A8D2INS4_VARKO)

HSP 1 Score: 72.0 bits (175), Expect = 3.540e-9
Identity = 42/130 (32.31%), Postives = 66/130 (50.77%), Query Frame = 0
Query:  550 VYFAAMEGILEKEKRRLSQQPEKFLSNVLHNYVLHKSFLTFAWETTAAAHG-------------RRDLQVFAVAYRAFDVSPFELTKALDTFCMLVPQMPRCLVHHLVCCDARILEWMAWRSKSPLVQVL 666
            +Y+  ME IL+ E++RLS       S +L+N + H S L  A E   A +G               DL  F       D+  F+L K +++F  + P + R ++ HL CC+ +I+E +AWRS SPL  ++
Sbjct:  460 LYYRVMESILKSEEKRLSIHN---FSKLLNNGIFHTSLLACALEVVIATYGISRNTSQSNNMTMETDLS-FPWIINILDLKAFDLYKVIESFIKVEPSLTREMIKHLECCEHQIMESLAWRSDSPLFDLI 585          
BLAST of Ggra2022.t1 vs. uniprot
Match: A0A2I0TQH2 (RB_A domain-containing protein n=1 Tax=Limosa lapponica baueri TaxID=1758121 RepID=A0A2I0TQH2_LIMLA)

HSP 1 Score: 67.0 bits (162), Expect = 1.250e-8
Identity = 43/146 (29.45%), Postives = 72/146 (49.32%), Query Frame = 0
Query:  525 RRFSAALCTVLRDTNSDRHVREVLAVYFAAMEGILEKEKRRLSQQPEKFLSNVLHNYVLHKSFLTFAWETTAAAHGRRDLQV----------FAVAYRAFDVSPFELTKALDTFCMLVPQMPRCLVHHLVCCDARILEWMAWRSKS 660
            ++F+ A+     +  S R+   V  +Y+  ME +L+ E+ RLS Q     S +L++ + H S L  A E   A +GR   Q           F      FD+  F+  K +++F    P + R ++ HL  C+ RI+E +AW+S+S
Sbjct:   82 KKFAEAVGQGCAEIGSQRYKLGV-RLYYRVMESMLKSEEERLSVQN---FSKLLNDNIFHTSLLACAVEVVMATYGRNASQSDGTSAETDLSFPWILSVFDLKAFDFYKVIESFIKAEPSLTREMIKHLERCEHRIMESLAWQSRS 223          
BLAST of Ggra2022.t1 vs. uniprot
Match: A0A8D3BMS4 (Uncharacterized protein n=1 Tax=Scophthalmus maximus TaxID=52904 RepID=A0A8D3BMS4_SCOMX)

HSP 1 Score: 69.3 bits (168), Expect = 2.090e-8
Identity = 46/148 (31.08%), Postives = 76/148 (51.35%), Query Frame = 0
Query:  525 RRFSAAL---CTVLRDTNSDRHVREVLAVYFAAMEGILEKEKRRLSQQPEKFLSNVLHNYVLHKSFLTFAWETTAAAHGRRDLQV---FAVAYRAFDVSPFELTKALDTFCMLVPQMPRCLVHHLVCCDARILEWMAWRSKSPLVQVL 666
            +RF  A+   C VL +      VR+    Y+  ME +L+ E++RLS Q     S +L++   H S L  A E   AA+G    +    F      F+++ F+  K +++F    P + + +V HL  C+  I+E +AWR+ SPL ++L
Sbjct:  245 QRFGQAVGPRCVVLGEQRFSLGVRQ----YYKVMEAMLKSEEKRLSVQN---FSKLLNDSTFHTSLLACALEVVMAAYGGVSPETDVCFPWILDVFNLAAFDFYKVIESFIKADPTLSKDIVKHLETCENLIMERIAWRTGSPLFELL 385          
The following BLAST results are available for this feature:
BLAST of Ggra2022.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IIU52.710e-8240.73Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3IIT01.040e-6563.59Retinoblastoma-associated protein n=1 Tax=Gracilar... [more]
A0A7S3A3H11.510e-1931.95Hypothetical protein n=3 Tax=Rhodosorus marinus Ta... [more]
A0A7S0BJ671.640e-1830.38Hypothetical protein (Fragment) n=1 Tax=Rhodosorus... [more]
A0A7J7IG246.700e-1034.38Retinoblastoma-like n=1 Tax=Cyanidiococcus yangmin... [more]
Q989663.470e-932.77Retinoblastoma protein n=1 Tax=Notophthalmus virid... [more]
A0A8D0KMR83.510e-929.38RB transcriptional corepressor 1 n=2 Tax=Salvator ... [more]
A0A8D2INS43.540e-932.31RB transcriptional corepressor 1 n=6 Tax=Varanus k... [more]
A0A2I0TQH21.250e-829.45RB_A domain-containing protein n=1 Tax=Limosa lapp... [more]
A0A8D3BMS42.090e-831.08Uncharacterized protein n=1 Tax=Scophthalmus maxim... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002720Retinoblastoma-associated protein, A-boxSMARTSM01368RB_A_2coord: 459..666
e-value: 1.3E-8
score: 36.8
IPR002720Retinoblastoma-associated protein, A-boxPFAMPF01858RB_Acoord: 537..665
e-value: 1.3E-21
score: 77.4
NoneNo IPR availableGENE3D1.10.472.10coord: 468..656
e-value: 2.2E-19
score: 72.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 677..724
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 677..714
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 292..423
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 92..114
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 375..394
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 298..358
NoneNo IPR availablePANTHERPTHR13742:SF17RETINOBLASTOMA-ASSOCIATED PROTEINcoord: 362..690
IPR028309Retinoblastoma protein familyPANTHERPTHR13742RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATEDcoord: 362..690
IPR036915Cyclin-like superfamilySUPERFAMILY47954Cyclin-likecoord: 539..669

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000030_piloncontigtig00000030_pilon:5392..8000 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2022.t1Ggra2022.t1Gracilaria gracilis GNS1m malemRNAtig00000030_pilon 5392..8000 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra2022.t1 ID=Ggra2022.t1|Name=Ggra2022.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=797bp
MQNLFDQAPAAPDAVQNDIDCIDILAHRLAFPDHVVLQARFIHANAFPMH
PDPYTSACALYIASIAIHAEQIPLHPLERVLRAADAQPQLLAPQSDSDSD
IEDEIQPVQPAAASPTDRRVHSASVAFMVSAHVWRQLCFLMDSGLLHDHP
RVLQLAWLFFLVARSSLTPPAECSLTYEQAHHVMLASVVHAGLIAGEDPG
HAIFRATCAVPNELRHYRRALDTQLHRHLHAILPLFPRPDSQLEVICQDL
DALYAQQLTGYKDRVATDERIFLHAPQLTAFTAQPLANPLGPVSARKAAS
NSEDTPSAAMSTANGSSAAAGSNSSSPQPQASNGPSTTNHVMGATQPQAQ
STPQATSALGRKRALDEDVDQDQDEDAITPRPQRRQRRADDEPVPPSAAR
PPTPARSTPARRARSRAAMLTPRSSPNFSRYALSTRPDALDALATVAAIS
PRYVTRPPTPNVAASPTTADDSRTMRWITTLTASRPETNSESCLTCPLEQ
VSTTDGLRKVTGGGRPLLAIIDVGRRFSAALCTVLRDTNSDRHVREVLAV
YFAAMEGILEKEKRRLSQQPEKFLSNVLHNYVLHKSFLTFAWETTAAAHG
RRDLQVFAVAYRAFDVSPFELTKALDTFCMLVPQMPRCLVHHLVCCDARI
LEWMAWRSKSPLVQVLQAYNRDLIMQQNRTAPSTQEASPEEVVGSDDTAQ
GSESAENFAQASPVTPAQERGVEEHQVRAVVQVEPGNQQACGFDHPVRDL
RRGEGAAHSAAVPHDCKTLPQPGPHERSNVPIQFAIGIGDSQHQPV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002720RB_A
IPR028309RB_fam
IPR036915Cyclin-like_sf