Ggra200.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Ggra200.t1
Unique Name	Ggra200.t1
Type	polypeptide
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	424

Homology

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BLAST of Ggra200.t1 vs. uniprot
Match: A0A2V3IBT3 (Uncharacterized protein n=4 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IBT3_9FLOR)

HSP 1 Score: 211 bits (536), Expect = 8.200e-59
Identity = 113/314 (35.99%), Postives = 185/314 (58.92%), Query Frame = 0

Query:   54 FRGRWFENLRSLEARDPYFFERGDGVLRDEGGSERGTRVYEGLNATLNNCLDLRRVYVMYYRPRERVQGREVAELKQTMTTISQFLRWAVVSSFCDKRHVWRDGELFRCVSEQDLLLRFTDYFRKRSSPGTLRVKATTLSRICGVGIMAVDDDRLRAKLEVILVMLRGIASAAKRAHRVRSQSKKGLLGGEGDDGALTVEDIAFSVQRTERALSFMMEG------RNGTNSTSPERLPFVKSWCRSFAGLLMLTSGGQRPQVFAQLQVPSKQQLAQWEHSQVGLAFVELKMEREKRHRYADLPQLVLPARMSNF 361
            +  RW+E LR LE   P  FE  +  +RD G    GT  ++G+ AT+ NCL LRRVY  YY+PR +  G+  A      TT+SQFLRWA+ +S C ++ VW++  LFR +++Q ++ RF +    RSSPGT++ + T++ R+C VG++   D  +  +L+++L++L+ + +A++ A+R R Q+KK L+             +    +R   AL+F M        R+GT++       +++ W  +F GL+ML SGGQRPQVF+ LQ+P++++  Q        +++EL+   EKR RY DLP ++LP  +  +
Sbjct:  134 YESRWYEQLRHLEKCHPKLFELLE--VRDAGP---GTFYFKGIGATVKNCLGLRRVYETYYKPRLQNNGKGAAAFTHLSTTVSQFLRWAICTSTCSRKDVWKEHVLFRALADQKVVNRFIEMLMLRSSPGTVKNRITSMKRVCDVGVIISGDTAIGMRLKLVLIVLQHMENASRCAYRKRCQAKKDLINRS------VPRHLDLIKRRALGALNFTMRSFWHRKQRSGTDAARKSMRSYLQIWNMNFMGLIMLVSGGQRPQVFSGLQLPNEEEFQQLTFQAEQSSYIELRTGTEKRPRYIDLPFMILPVTVMPY 436

The following BLAST results are available for this feature:

BLAST of Ggra200.t1 vs. uniprot

BLAST of Ggra200.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A2V3IBT3	8.200e-59	35.99	Uncharacterized protein n=4 Tax=Gracilariopsis cho...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 372..397
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 419..423
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..351
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 352..371
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 398..418
None	No IPR available	TMHMM	TMhelix		coord: 397..419

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000960_pilon	contig	tig00000960_pilon:84098..91308 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra200.t1	Ggra200.t1	Gracilaria gracilis GNS1m male	mRNA	tig00000960_pilon 84098..91308 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Ggra200.t1 ID=Ggra200.t1|Name=Ggra200.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=424bp
MWSSFVCKAVAFGCGLLERAREFWRERIRDGRDFKRRRIDRTGPVMNDDE
SVRFRGRWFENLRSLEARDPYFFERGDGVLRDEGGSERGTRVYEGLNATL
NNCLDLRRVYVMYYRPRERVQGREVAELKQTMTTISQFLRWAVVSSFCDK
RHVWRDGELFRCVSEQDLLLRFTDYFRKRSSPGTLRVKATTLSRICGVGI
MAVDDDRLRAKLEVILVMLRGIASAAKRAHRVRSQSKKGLLGGEGDDGAL
TVEDIAFSVQRTERALSFMMEGRNGTNSTSPERLPFVKSWCRSFAGLLML
TSGGQRPQVFAQLQVPSKQQLAQWEHSQVGLAFVELKMEREKRHRYADLP
QLVLPARMSNFFYVVVIGLVFQELKDIFENPSQLVLILSISVPSQSTFLM
KYVLINAFLGSTLILLNIGRLMV*