Ggra1994.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra1994.t1
Unique NameGgra1994.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length1055
Homology
BLAST of Ggra1994.t1 vs. uniprot
Match: A0A2V3IYJ7 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IYJ7_9FLOR)

HSP 1 Score: 1123 bits (2904), Expect = 0.000e+0
Identity = 726/1062 (68.36%), Postives = 849/1062 (79.94%), Query Frame = 0
Query:    1 MVVTDAVQPASALSPHDTQIADAISAWLCALNLIESGQSFESATRQCISLCRVFSLFAPHLLSDRDFFIPAPNAEANLSRHRRYNTRRLARCLVRHFHLTTSDGNISLPDAQSPQPLVQLKQTARDTILSLSEAARAEDVEPLPVMLSLAEVVLCAAVHSDKREPFIKAVLTLAPDHQDALAASICRTTVEKAQDTRVLGQIPVNDENLNVR--SATPSRKSSAMEKGASPLSTPRGIPLADYKALAAERDNLRRKLAACEFEKNKAVELSQGLKTNLEEASDKIRLLETRQEESATELVSKSKALSDAKCALRGAHVAAEEVDILRAKASSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQVSAFRETEERLSKHNEYLEGQLTYSNTRSTQFAKLSESLTAEMEKKDSEIKTLKTENSSLRSSMETANQQLAAFLMQSAHTASRDTGINPAGEEMSASLRTPKSMGGAKVSNHASPATTPMSDELVKERACDILFNDIGARMTWEDIVECIDGVMDALKDLDRMEDGEDPCLGSSSEAETESKPS-ISRIENPHLMSRISQQSNDTNTSYIGSEAESRMSLLPEFTIMDYQERIQKGHSGDEFDYAANHTNVEEIPLDRMQPPHSPA---QKSIASVPAEGTSSLSNTEDEGDCEHADETVNATIPKPQPATITQ-TDPNSCERKSSGIDSLRRSPTQPHSPFIADDIMQGKAQTIRLQFGSRHLTSVRHSSLIQLKNLKRASSLTLSKRSGMSSNDSRSDTTRTLVLQTHNDLLSLQNTLDLMRTERQSSRSVGNLVHQLDITRKQLNEAQAKLFESNEECNSLRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRTSKVVERAQEVEIARLNAKLETNEVMAVKLNDVMRKADGLQKEISKERENHLQGIAEAVKREQRVAEEARKEARLMAKNHTTMLEDVRASALAAARGSMRANQERVPRRGAWFTDFWRRLLHLEKLNSDFSTSPTGPTPSA--DGHRGRTVRTRR 1053
            MVVTD V    +LSP D Q+A AISAWL ALNL+++  SFE ATRQC++LCRVF+LFAPHLL++RDFF P  +AEANLSRHRRYNTRRLA+ LVR+FH+   D    L DA +P+PL+QL+Q A+DT+LSLSEAAR EDVEPL +MLSLAEVVL AAVHS++RE FIKAVLTL+ DHQDALAASICRTTVE A+DTRVLGQI VNDENL+    S+ P++KS++++  +SPLS PRGIPLADYKALAAERDNLRRKLAACEFE+NKAVELSQGLK+NLEEASDK+RLLE++QE++ TELV+K+KAL+DAK ALRGAHVAAEEVDILRA+A+ XXXXXXXXXXXXXXXXXXXXXXXXXX   AQ+SA RE EER++KH EYLE QLTYSN RSTQF      LTA++EKK+ EIKTLK++NSSL++++E ANQQLA FLMQSAHTASRDT +N   E+ SAS++ P     A +     PA+  MS+EL+KERACDIL   IGARM WEDIVECIDGVMDALKDLD ME  +DP + S+S+   E +PS ++ +  P  +SR S QS DTN SY+GSEAESRMSLLPEFT+MDYQER QKG+ GDEFDYAANHTNVEEIPLDR  PP  P+   + +I+                           AT+P    AT+   TDP+SCERKSSG+ S++RSP QPHSPF+A+DIM    QT++LQ+GSR + +VRHSSL QL   KRASSL++S+RSG+SS++SRSDTTRTLVLQ  N+LLSLQNTLDLMRTERQSSRSVG+LVHQLDITRKQLNEA AKL           XXXXXXXXXXXXX               XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX LR +KVVERAQEVEIARLNAKLET+E +  KL DVM++ADGLQKEISKEREN L GIAEAVKREQR+AEEAR+EAR +AKNH+TMLEDVRASA+AAARGSM+ NQ+R PR+G  F  FWRRLLHL++ N+D STSPT  + +A  DG  GR VR++R
Sbjct:    1 MVVTDTVPADISLSPQDAQVASAISAWLSALNLVDADLSFEYATRQCVALCRVFALFAPHLLAERDFFEPTSSAEANLSRHRRYNTRRLAKSLVRYFHICPPDPRTPLTDAPTPRPLIQLRQQAKDTVLSLSEAARTEDVEPLHLMLSLAEVVLSAAVHSEQRETFIKAVLTLSQDHQDALAASICRTTVENAKDTRVLGQISVNDENLSTSRPSSQPNKKSNSLDAQSSPLSAPRGIPLADYKALAAERDNLRRKLAACEFERNKAVELSQGLKSNLEEASDKVRLLESKQEQAQTELVTKAKALNDAKSALRGAHVAAEEVDILRARAAXXXXXXXXXXXXXXXXXXXXXXXXXXXDLEAQISALRENEERITKHTEYLESQLTYSNNRSTQFXXXXXXLTADIEKKEDEIKTLKSDNSSLKAAVEAANQQLATFLMQSAHTASRDTAMNKPSEDASASVKHP---ANANIVEQVLPASVHMSEELIKERACDILSQQIGARMGWEDIVECIDGVMDALKDLDAME-SDDPSVRSASDIGLERRPSSVAVVHKPRPVSRGSLQSIDTNASYVGSEAESRMSLLPEFTVMDYQERAQKGYDGDEFDYAANHTNVEEIPLDREVPPLMPSSCGKPTISPTTNSNPXXXXXXXXXXXXXXXXXXXXATVPAAFSATVMHATDPSSCERKSSGVGSVKRSPNQPHSPFLAEDIMHSGRQTVQLQYGSRQIRAVRHSSLAQLSTAKRASSLSMSRRSGISSSESRSDTTRTLVLQARNELLSLQNTLDLMRTERQSSRSVGSLVHQLDITRKQLNEAHAKLLXXXXXXXXXXXXXXXXXXXXXXXSAYKEHKEEEEAKVLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLRAAKVVERAQEVEIARLNAKLETSEGVVAKLQDVMKRADGLQKEISKERENRLNGIAEAVKREQRIAEEARQEARRVAKNHSTMLEDVRASAIAAARGSMKGNQDRTPRKGTRFAGFWRRLLHLDRFNNDVSTSPTAASDAAEKDGQAGRNVRSKR 1058          
BLAST of Ggra1994.t1 vs. uniprot
Match: S0F367 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=S0F367_CHOCR)

HSP 1 Score: 378 bits (970), Expect = 4.810e-111
Identity = 377/976 (38.63%), Postives = 531/976 (54.41%), Query Frame = 0
Query:   17 DTQIADAISAWLCALNLIESGQS-FESATRQCISLCRVFSLFAPHLLSDRDFFIPAPNAEANLSRHRRYNTRRLARCLVRHFHLT---TSDGNISLPDAQSPQPLVQLKQTARDTILSLSEAARAEDVEPLPVMLSLAEVVLCAAVHSDKREPFIKAVLTLAPDHQDALAASICRTTVE-KAQDTRVLGQIPVNDENLNVRSATPSRKSSAMEKGASPLSTPRGIPLADYKALAAERDNLRRKLAACEFEKNKAVELSQGLKTNLEEASDKIRLLETRQEESATELVSKSKALSDAKCALRGAHVAAEEVDILRAKASSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQVSAFRETEERLSKHNEYLEGQLTYSNTRSTQFAKLSESLTAEMEKKDSEIKTLKTENSSLRSSMETANQQLAAFLMQSAH----TASRDTGINPAGEEMSASLRTPKSMGGAKVSNHASPATTPMSDELVKERACDILFNDIGARMTWEDIVECIDGVMDALKDL-DR----MEDGEDPCLGSSSEAETESKPSISRIENPHLMSRISQQSNDTNTSYIGSEAESRMSLLPEFTIMDYQERIQKGHSGDEFDYAANHTNVEEIPL-----DRMQPPHSPAQKSIASVPAEGTSSLSNTEDEGDCEHADETVNATIPKPQPATITQTDPNSCERKSSGIDSLRRSPTQPHSPFIADDIMQGKAQTIRLQFGSRHLTSVRHSSLIQLKNLKRASSLTLSKRSGMSSNDSRSDTTRTLVLQTHNDLLSLQNTLDLMRTERQSSRSVGNLVHQLDITRKQLNEAQAKLFESNEECNSLRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRTSKVVERAQEVEIARLNAKLETNEVMAVKLNDVMRKADGLQKEISKERENHLQGIAEAVKREQRVAEEARKEA 973
            D  I+ AI+AWL AL LI S  +  E   + C+ LC++   FAP+  S RDFF  +        R  RYN+RRL R L   + LT   +S G  S    +S  P V L       I   +E     D  P+  +L+++EV LCAAVH  + E FIKAV+ L    QD L  SI RT  + + +D +VL  + VNDEN   R+ + ++ +  + KG + L+   GIPLADYKALAAERD LR+KLA  E E+++ VE    LK  L+EA DK+  L     +  ++L +K+ AL +A+  LR  HVAAEEVD+L++KA++                              Q+SAFRE EER++KHN+Y+E QL  +N R  QFA LS++LT  +E K+ +I  LK + S L   +E AN+QLA+  + S +    ++   T  + A   MS S++T        V    S AT P+ DE V    CD LF++IG R+TW DIVE + G+MDA+K++ DR    +ED ++  L SSS  +           +  L S  S+ +  TN     ++ +S +S+LP F+ +D +      ++GDEFD+AAN  NV+EI L       M+    P++K+  S     +S  S TE+    E+A                         R  SG+ S +    QP  P    D     +  +     S+   +++ S    L +  RA+SLT+S   G+    SRS+ TRTLV +   +L  LQ  +++MR ERQ+S S+  LV +LD  RK+L  A+ +L +   +   LR                   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX      L+ S V+ RAQE+E+ARLNAKLE NE +  +LN +    +GL  ++ K+RE+H++ +A   +RE+ +A+EAR EA
Sbjct:   53 DLSISSAITAWLHALGLIPSADAPLEECVQDCVPLCKLMCRFAPNHFSRRDFFNTSGPVSPTTKRQGRYNSRRLTRALAEWYGLTVRSSSPGRDSSAGTKSSAPPVHLAPALAAQITMFTETDVGLD-SPMD-LLAVSEVALCAAVHCAENEAFIKAVIGLPMPQQDLLQLSIKRTFQDPETRDEKVLRSVSVNDEN---RTDSATQYAQQIAKGDARLTASVGIPLADYKALAAERDVLRKKLANSEKERSRMVEDVTDLKGRLDEAGDKVLELGQLSRQKDSQLEAKTVALVNAQNELRQVHVAAEEVDVLKSKAATVEQLQASLQRATKRLEENANLRHTTRELETQLSAFRENEERINKHNDYIELQLRTANERVQQFAVLSDNLTNSVEDKERDIAQLKRQKSELSDRLEIANKQLASMFVSSTNDLDDSSPETTPKSAATSNMSDSVKT--------VLMECSRAT-PVFDENV---VCDHLFDEIGVRLTWSDIVESVKGIMDAMKEMNDREVGAVEDDDESHLFSSSGVDA---------SDASLGSHRSEVA--TNNGSNSTDVDSGISVLPAFSELDSKLLAANSYAGDEFDFAANQMNVQEIALAVKQEGGMRAIPRPSEKTDTSEDTMDSSGYS-TENTSGYENA-------------------------RNESGMSSSQ----QPSGPGAQGD----NSSRLSSLDPSKVNAALQCSMYRSLPSNGRATSLTISVLGGLRRKQSRSENTRTLVREARLELDRLQKAIEMMRAERQASSSISTLVTELDRARKELMAAREELTKKEADNKRLRDESSAILREMDTMVRTQTEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSFSEKLQASAVIARAQEMEVARLNAKLEANEALTKQLNAITSNTEGLSTKLYKQRESHIESLA---RREKELAQEARDEA 963          
BLAST of Ggra1994.t1 vs. uniprot
Match: A0A2V3J3Q9 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J3Q9_9FLOR)

HSP 1 Score: 168 bits (425), Expect = 4.150e-45
Identity = 91/113 (80.53%), Postives = 98/113 (86.73%), Query Frame = 0
Query:  392 QFAKLSESLTAEMEKKDSEIKTLKTENSSLRSSMETANQQLAAFLMQSAHTASRDTGINPAGEEMSASLRTPKSMGGAKVSNHASPATTPMSDELVKERACDILFNDIGARMT 504
            QFAKLSE LTAEMEKKDS++KTL TEN+SLR+SMET NQQLAAFLMQS+HTASRDTG NPA EEM+  LRTPKSM  AKVSN ASP T PMS+ELVKE ACDILF DIGA MT
Sbjct:    2 QFAKLSEGLTAEMEKKDSDLKTLITENASLRASMETVNQQLAAFLMQSSHTASRDTGTNPASEEMATMLRTPKSMSKAKVSNQASPVTVPMSNELVKEHACDILFKDIGAHMT 114          
BLAST of Ggra1994.t1 vs. uniprot
Match: A0A2V3ITY8 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ITY8_9FLOR)

HSP 1 Score: 124 bits (311), Expect = 8.950e-30
Identity = 70/85 (82.35%), Postives = 77/85 (90.59%), Query Frame = 0
Query:  392 QFAKLSESLTAEMEKKDSEIKTLKTENSSLRSSMETANQQLAAFLMQSAHTASRDTGINPAGEEMSASLRTPKSMGGAKVSNHAS 476
            QFAKLSE LTAEMEKK S+IKTLKTEN+SLR+SMET NQQLAAFLMQSAHTASRDTG NPA EEMSA LR+P+SM GAKVS+ A+
Sbjct:    2 QFAKLSEGLTAEMEKKGSDIKTLKTENASLRASMETVNQQLAAFLMQSAHTASRDTGTNPASEEMSAVLRSPRSMSGAKVSSLAT 86          
The following BLAST results are available for this feature:
BLAST of Ggra1994.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2V3IYJ70.000e+068.36Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
S0F3674.810e-11138.63Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A2V3J3Q94.150e-4580.53Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3ITY88.950e-3082.35Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 397..431
NoneNo IPR availableCOILSCoilCoilcoord: 952..979
NoneNo IPR availableCOILSCoilCoilcoord: 241..261
NoneNo IPR availableCOILSCoilCoilcoord: 790..905
NoneNo IPR availableCOILSCoilCoilcoord: 324..371
NoneNo IPR availableCOILSCoilCoilcoord: 930..950
NoneNo IPR availableCOILSCoilCoilcoord: 269..296
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 626..645
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 209..227
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 599..701
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 662..694
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 209..231
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1029..1054
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 522..546
IPR036872CH domain superfamilyGENE3D1.10.418.10coord: 20..190
e-value: 9.2E-6
score: 27.4

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000925_piloncontigtig00000925_pilon:103003..106167 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1994.t1Ggra1994.t1Gracilaria gracilis GNS1m malemRNAtig00000925_pilon 103003..106167 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra1994.t1 ID=Ggra1994.t1|Name=Ggra1994.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=1055bp
MVVTDAVQPASALSPHDTQIADAISAWLCALNLIESGQSFESATRQCISL
CRVFSLFAPHLLSDRDFFIPAPNAEANLSRHRRYNTRRLARCLVRHFHLT
TSDGNISLPDAQSPQPLVQLKQTARDTILSLSEAARAEDVEPLPVMLSLA
EVVLCAAVHSDKREPFIKAVLTLAPDHQDALAASICRTTVEKAQDTRVLG
QIPVNDENLNVRSATPSRKSSAMEKGASPLSTPRGIPLADYKALAAERDN
LRRKLAACEFEKNKAVELSQGLKTNLEEASDKIRLLETRQEESATELVSK
SKALSDAKCALRGAHVAAEEVDILRAKASSAEQLEASLKRASKRLEEVAD
MRRANKDLEAQVSAFRETEERLSKHNEYLEGQLTYSNTRSTQFAKLSESL
TAEMEKKDSEIKTLKTENSSLRSSMETANQQLAAFLMQSAHTASRDTGIN
PAGEEMSASLRTPKSMGGAKVSNHASPATTPMSDELVKERACDILFNDIG
ARMTWEDIVECIDGVMDALKDLDRMEDGEDPCLGSSSEAETESKPSISRI
ENPHLMSRISQQSNDTNTSYIGSEAESRMSLLPEFTIMDYQERIQKGHSG
DEFDYAANHTNVEEIPLDRMQPPHSPAQKSIASVPAEGTSSLSNTEDEGD
CEHADETVNATIPKPQPATITQTDPNSCERKSSGIDSLRRSPTQPHSPFI
ADDIMQGKAQTIRLQFGSRHLTSVRHSSLIQLKNLKRASSLTLSKRSGMS
SNDSRSDTTRTLVLQTHNDLLSLQNTLDLMRTERQSSRSVGNLVHQLDIT
RKQLNEAQAKLFESNEECNSLRYEMDLLLKEVDVLTAQKKEKEEDETKVV
EEKERLIEHLQDSLRLKEEELTSVKSKLKSTAEYVDNLEQSRKSLEEKLR
TSKVVERAQEVEIARLNAKLETNEVMAVKLNDVMRKADGLQKEISKEREN
HLQGIAEAVKREQRVAEEARKEARLMAKNHTTMLEDVRASALAAARGSMR
ANQERVPRRGAWFTDFWRRLLHLEKLNSDFSTSPTGPTPSADGHRGRTVR
TRRQ*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036872CH_dom_sf