Ggra1659.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra1659.t1
Unique NameGgra1659.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length188
Homology
BLAST of Ggra1659.t1 vs. uniprot
Match: A0A2V3IM69 (Ribosomal RNA-processing protein 40 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IM69_9FLOR)

HSP 1 Score: 323 bits (827), Expect = 5.900e-110
Identity = 151/187 (80.75%), Postives = 176/187 (94.12%), Query Frame = 0
Query:    1 MRYESNRNKLWIANNQKRYVPALEDPVIGIVQDRFADEYRLDINGSDTATLPMLAFEGATKKNRPNLSIGSLVYCRIVRASKNMETEVSCVEPGSTKSWSGGETLYGELQGGTIVQVSLGMAKTLVRDETVLRMLGRVPFQSAVGVNGRIWIEAGNVEHTMLLSLALKKADAMQADEWRDYVRRLFS 187
            MRYE++RNKLW+ +NQKRYVPALEDP+IGIVQDRF +EYRLDINGSDTATL MLAF+GATKKNRPNL  G+LVYCR+VRASKNME EVSC+EPGSTKSWSGGETLYGELQGGT+VQVSLGMA+ L+R++ VL+M+G VPFQSAVGVNGRIWIEAGN EHTMLLSLAL+KAD M+ADEW+++V++L+S
Sbjct:   59 MRYEASRNKLWVESNQKRYVPALEDPIIGIVQDRFGEEYRLDINGSDTATLSMLAFQGATKKNRPNLGAGALVYCRVVRASKNMEAEVSCIEPGSTKSWSGGETLYGELQGGTVVQVSLGMARKLLREDRVLKMVGNVPFQSAVGVNGRIWIEAGNCEHTMLLSLALQKADVMRADEWQEFVKQLWS 245          
BLAST of Ggra1659.t1 vs. uniprot
Match: R7QHJ3 (Ribosomal RNA-processing protein 40 n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QHJ3_CHOCR)

HSP 1 Score: 259 bits (662), Expect = 1.210e-84
Identity = 121/185 (65.41%), Postives = 155/185 (83.78%), Query Frame = 0
Query:    3 YESNRNKLWIANNQKRYVPALEDPVIGIVQDRFADEYRLDINGSDTATLPMLAFEGATKKNRPNLSIGSLVYCRIVRASKNMETEVSCVEPGSTKSWSGGETLYGELQGGTIVQVSLGMAKTL-VRDETVLRMLG-RVPFQSAVGVNGRIWIEAGNVEHTMLLSLALKKADAMQADEWRDYVRRL 185
            ++  RNK W+ NNQKRYVPALED VIG+V++R +++ RLDING+DTATL  LAFEGATKKNRP+L IGSL+YCRI RASKNME E SC+EPGS KSW GGE LYGEL+GG ++QVSLG+A++L V +  VL  LG ++PFQSAVGVNGR+WI++ + EHT+LLS+A+ KAD M ADEW+ +V+++
Sbjct:   75 FDGRRNKTWVENNQKRYVPALEDMVIGVVEERHSEDVRLDINGTDTATLSSLAFEGATKKNRPHLDIGSLIYCRITRASKNMEAEASCIEPGSNKSWVGGEALYGELKGGNVIQVSLGLARSLLVPNGPVLTTLGAKIPFQSAVGVNGRVWIQSSSTEHTVLLSIAIAKADTMPADEWKAFVKKM 259          
BLAST of Ggra1659.t1 vs. uniprot
Match: A0A7S0ZEN3 (Ribosomal RNA-processing protein 40 n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZEN3_9RHOD)

HSP 1 Score: 177 bits (449), Expect = 1.020e-52
Identity = 87/175 (49.71%), Postives = 126/175 (72.00%), Query Frame = 0
Query:    6 NRNKLWIANNQKRYVPALEDPVIGIVQDRFADEYRLDINGSDTATLPMLAFEGATKKNRPNLSIGSLVYCRIVRASKNMETEVSCVEPGSTKSWSGGETLYGELQGGTIVQVSLGMAKTLV--RDETVLRMLGR-VPFQSAVGVNGRIWIEAGNVEHTMLLSLALKKADAMQADE 177
            +R+K+W+  N KRYVP  +D VIG V +R ++ YR+DI  S+ ATL  L FEGATK+NRP L+ G++VY R+V A +  E E+SC  PGS +SW  GE+  GEL GG +++VSLG A++L    ++ VL +LG  + ++SA+G NGRIWI+AG+V H++L+SLA++ A A+  DE
Sbjct:   54 SRSKVWVETNGKRYVPIADDLVIGTVVERHSEGYRVDIGSSECATLGALEFEGATKRNRPMLNPGAVVYARVVSAQRWTEPELSCTVPGSNRSWVSGESTLGELVGGNVIKVSLGTARSLFVQNEKNVLSVLGEHISYESAIGYNGRIWIKAGSVPHSVLVSLAIENAQALTQDE 228          
BLAST of Ggra1659.t1 vs. uniprot
Match: A0A1W0A9P5 (Ribosomal RNA-processing protein 40 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A9P5_9STRA)

HSP 1 Score: 171 bits (434), Expect = 2.920e-50
Identity = 85/184 (46.20%), Postives = 126/184 (68.48%), Query Frame = 0
Query:    8 NKLWIANNQKRYVPALEDPVIGIVQDRFADEYRLDINGSDTATLPMLAFEGATKKNRPNLSIGSLVYCRIVRASKNMETEVSCVEPG--STKSWSGGETLYGELQGGTIVQVSLGMAKTLVRDE-TVLRMLGR-VPFQSAVGVNGRIWIEAGNVEHTMLLSLALKKADAMQADEWRDYVRRLFS 187
            N+ WI  N KRY+P+++D V+G++ DR A+ YRLDI  S  ATL MLAF+GA+K+NRPNL  GSLVYCR+  A++N+E  ++C  P   + K W  G  LYGEL GG +++ S+G+AK+L++DE  VL  LGR +PF+ AVG NG IW+ +G  + T+L++ A+  ++ +   +    V +L S
Sbjct:   66 NRYWIDFNHKRYIPSMDDGVVGVIVDRNAEFYRLDIGASTYATLGMLAFDGASKRNRPNLQPGSLVYCRVASANQNLEPSLTCEAPSHMTKKDWMTGLALYGELNGGYVLKTSIGLAKSLLKDECVVLSALGRAIPFEIAVGFNGIIWVNSGTCQDTILITNAILNSEGLPEAQVEAMVDKLIS 249          
BLAST of Ggra1659.t1 vs. uniprot
Match: W4FDB9 (Ribosomal RNA-processing protein 40 n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FDB9_9STRA)

HSP 1 Score: 169 bits (429), Expect = 1.960e-49
Identity = 86/182 (47.25%), Postives = 127/182 (69.78%), Query Frame = 0
Query:    8 NKLWIANNQKRYVPALEDPVIGIVQDRFADEYRLDINGSDTATLPMLAFEGATKKNRPNLSIGSLVYCRIVRASKNMETEVSCVEPG--STKSWSGGETLYGELQGGTIVQVSLGMAKTLVRDE-TVLRMLGR-VPFQSAVGVNGRIWIEAGNVEHTMLLSLALKKADAMQADEWRDYVRRL 185
            N+ W+  N KRY PAL+D V+G+V DR A+ YR+DI GS  ATL MLAF+GA+K+NRPN+  GSLVYCR+VRA+K+++  V+C  P   + K W  G  +YGEL GG + + S+G+AK+LV+DE  VL  LGR +PF+ AVGVNG +W+ + + + T+L++ A+  ++ +   +    V +L
Sbjct:   67 NRYWLDFNHKRYTPALDDGVVGMVVDRNAEFYRVDIGGSSFATLGMLAFDGASKRNRPNMQPGSLVYCRVVRAAKDLDACVTCEAPTHLAKKDWMTGLAIYGELTGGYVFKASIGLAKSLVQDECAVLESLGRAIPFELAVGVNGVVWLNSKSSQDTILVANAILNSEGLTPAQCEAMVAKL 248          
BLAST of Ggra1659.t1 vs. uniprot
Match: A0A024TLH3 (Ribosomal RNA-processing protein 40 n=3 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TLH3_9STRA)

HSP 1 Score: 167 bits (423), Expect = 1.490e-48
Identity = 84/182 (46.15%), Postives = 128/182 (70.33%), Query Frame = 0
Query:    8 NKLWIANNQKRYVPALEDPVIGIVQDRFADEYRLDINGSDTATLPMLAFEGATKKNRPNLSIGSLVYCRIVRASKNMETEVSCVEPG--STKSWSGGETLYGELQGGTIVQVSLGMAKTLVRDET-VLRMLGR-VPFQSAVGVNGRIWIEAGNVEHTMLLSLALKKADAMQADEWRDYVRRL 185
            N+ W+  N KRY PALED V+G++ DR A+ YR+DI  S  ATL MLAF+GA+K+NRPNL  G+LVYCR+VRA+K+++  V+C  P   + K W  G  +YGEL GG +++ S+G+AKTL++D+  VL  LGR +PF+ AVG+NG +W+ + + + T+L++ A+  ++ + A +    V +L
Sbjct:   67 NRYWLDFNHKRYKPALEDGVVGMIVDRNAEFYRVDIGSSSYATLGMLAFDGASKRNRPNLQPGTLVYCRVVRATKDLDACVTCEAPSHLAKKDWMTGLAIYGELVGGYVLKTSIGLAKTLIQDDCIVLEALGRAIPFELAVGMNGVVWLNSKSNQDTILIANAILNSEGLTAAQSEAMVVKL 248          
BLAST of Ggra1659.t1 vs. uniprot
Match: A0A1V9Y536 (Exosome complex exonuclease RRP40 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Y536_9STRA)

HSP 1 Score: 166 bits (421), Expect = 2.810e-48
Identity = 84/184 (45.65%), Postives = 126/184 (68.48%), Query Frame = 0
Query:    8 NKLWIANNQKRYVPALEDPVIGIVQDRFADEYRLDINGSDTATLPMLAFEGATKKNRPNLSIGSLVYCRIVRASKNMETEVSCVEPG--STKSWSGGETLYGELQGGTIVQVSLGMAKTLVRDE-TVLRMLGR-VPFQSAVGVNGRIWIEAGNVEHTMLLSLALKKADAMQADEWRDYVRRLFS 187
            N+ WI  N KRYV A++D V+G+V DR A+ YRLDI  S  ATL MLAF+GA+K+NRPNL  GSLVYCR++  +K++E  ++C  P   + K W  G  LYGEL GG + +VS+G+AK+L++D+  VL  LG+ +PF+ A G+NG +W+ +G+  +T+L++ A+  ++ +   +    V RL S
Sbjct:   66 NRYWIDFNHKRYVAAVDDGVVGLVVDRNAEFYRLDIGASSYATLGMLAFDGASKRNRPNLQPGSLVYCRVLSTNKDLEPALTCEAPSHMTKKDWMTGLALYGELNGGYVFKVSIGLAKSLLKDDCAVLAALGKAIPFEVAAGMNGVVWVNSGSCHNTILITNAILNSEGLTDAQIEAMVDRLIS 249          
BLAST of Ggra1659.t1 vs. uniprot
Match: A0A8H7U7S5 (Ribosomal RNA-processing protein 40 n=1 Tax=Mortierella isabellina TaxID=91625 RepID=A0A8H7U7S5_MORIS)

HSP 1 Score: 166 bits (419), Expect = 3.670e-48
Identity = 86/187 (45.99%), Postives = 127/187 (67.91%), Query Frame = 0
Query:    1 MRYESNRNKLWIANNQKRYVPALEDPVIGIVQDRFADEYRLDINGSDTATLPMLAFEGATKKNRPNLSIGSLVYCRIVRASKNMETEVSCVEPGSTKSWSGGETLYGELQGGTIVQVSLGMAKTLVRDET-VLRMLGR-VPFQSAVGVNGRIWIEAGNVEHTMLLSLALKKADAMQADEWRDYVRRL 185
            ++++   NK W+ +NQ+RYV A  + VIGIV  R A+ YR+DI G+  A LP+LAFEGATKKN+PNL  G+LVY RI  A+K+ME E+ C  P S K+       YGEL+GG +++ SLG+ + L+  ET +LR LG   PF++AVG+NGRIW+ + N ++T+LL+ A+K ++ +   + +  V  L
Sbjct:   55 LKHQDPGNKWWLESNQRRYVAATGESVIGIVVARLAEYYRVDIGGAQAAILPVLAFEGATKKNKPNLVPGTLVYARISLANKDMEPELQCFNPSSGKADG-----YGELKGGFVIRCSLGLCRRLLNPETPILRFLGEHFPFETAVGMNGRIWVNSENPQYTILLANAVKNSEYLSEAQCKAMVESL 236          
BLAST of Ggra1659.t1 vs. uniprot
Match: A0A7S3ENW1 (Ribosomal RNA-processing protein 40 n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3ENW1_9RHOD)

HSP 1 Score: 166 bits (419), Expect = 5.480e-48
Identity = 80/176 (45.45%), Postives = 121/176 (68.75%), Query Frame = 0
Query:    1 MRYESNRNKLWIANNQKRYVPALEDPVIGIVQDRFADEYRLDINGSDTATLPMLAFEGATKKNRPNLSIGSLVYCRIVRASKNMETEVSCVEPGSTKSWSGGETLYGEL-QGGTIVQVSLGMAKTLVRDE-TVLRMLGRV---PFQSAVGVNGRIWIEAGNVEHTMLLSLALKKAD 171
            +R ++ R+K+W+ +  +RYVPALED VIG+V DR  + YR+DI   + A L  L+FEGATK+NRP L++G+LVY R+V   K ME E+SC++PGS+KSW  GE+L+GEL  GG ++++SL  A+ L++   TVL  LG      F+  +G NGR+W+ A     T+++  A++ A+
Sbjct:   58 VRVQAERSKIWVESGGRRYVPALEDMVIGVVVDRHGEGYRVDIGSYEAAQLGSLSFEGATKRNRPYLNLGALVYARVVSCDKVMEPEISCIQPGSSKSWVSGESLFGELIGGGQLIKISLASARGLLKPSCTVLNALGEALPKGFECVIGTNGRVWVRASTPSDTVVVVTAIRMAE 233          
BLAST of Ggra1659.t1 vs. uniprot
Match: A0A6G0XI83 (Ribosomal RNA-processing protein 40 n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XI83_9STRA)

HSP 1 Score: 165 bits (418), Expect = 8.200e-48
Identity = 83/182 (45.60%), Postives = 128/182 (70.33%), Query Frame = 0
Query:    8 NKLWIANNQKRYVPALEDPVIGIVQDRFADEYRLDINGSDTATLPMLAFEGATKKNRPNLSIGSLVYCRIVRASKNMETEVSCVEPG--STKSWSGGETLYGELQGGTIVQVSLGMAKTLVRDE-TVLRMLGR-VPFQSAVGVNGRIWIEAGNVEHTMLLSLALKKADAMQADEWRDYVRRL 185
            N+ WI  N KRY+P+++D V+G++ DR A+ YR+DI G+  ATL MLAF+GA+K+NRPNL  GSL+YCR++RA+K++E  V+C  P   + K W  G  +YGEL GG + ++S+G+AK+L+ D+  VL  LG+ VPF+ AVGVNG +W+ + +   T+L++ A+  ++ + A +    V RL
Sbjct:   67 NRYWIDFNHKRYLPSVDDGVVGMIVDRNAEFYRVDIGGAAHATLGMLAFDGASKRNRPNLQPGSLIYCRVLRAAKDLEPCVTCEAPSHLTKKDWMTGLAIYGELIGGFVFKISIGLAKSLLEDDCVVLTALGKSVPFELAVGVNGVVWLNSKSNADTILITNAILNSEGLNAAQSEAMVARL 248          
The following BLAST results are available for this feature:
BLAST of Ggra1659.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IM695.900e-11080.75Ribosomal RNA-processing protein 40 n=1 Tax=Gracil... [more]
R7QHJ31.210e-8465.41Ribosomal RNA-processing protein 40 n=1 Tax=Chondr... [more]
A0A7S0ZEN31.020e-5249.71Ribosomal RNA-processing protein 40 n=1 Tax=Timspu... [more]
A0A1W0A9P52.920e-5046.20Ribosomal RNA-processing protein 40 n=1 Tax=Thraus... [more]
W4FDB91.960e-4947.25Ribosomal RNA-processing protein 40 n=1 Tax=Aphano... [more]
A0A024TLH31.490e-4846.15Ribosomal RNA-processing protein 40 n=3 Tax=Aphano... [more]
A0A1V9Y5362.810e-4845.65Exosome complex exonuclease RRP40 n=1 Tax=Achlya h... [more]
A0A8H7U7S53.670e-4845.99Ribosomal RNA-processing protein 40 n=1 Tax=Mortie... [more]
A0A7S3ENW15.480e-4845.45Ribosomal RNA-processing protein 40 n=1 Tax=Rhodos... [more]
A0A6G0XI838.200e-4845.60Ribosomal RNA-processing protein 40 n=1 Tax=Aphano... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036612K Homology domain, type 1 superfamilyGENE3D3.30.1370.10K Homology domain, type 1coord: 105..187
e-value: 4.5E-18
score: 66.7
IPR036612K Homology domain, type 1 superfamilySUPERFAMILY54791Eukaryotic type KH-domain (KH-domain type I)coord: 111..186
IPR004088K Homology domain, type 1PFAMPF15985KH_6coord: 112..157
e-value: 5.6E-11
score: 42.7
NoneNo IPR availableGENE3D2.40.50.140coord: 21..96
e-value: 3.6E-30
score: 105.5
NoneNo IPR availablePANTHERPTHR21321:SF1EXOSOME COMPLEX COMPONENT RRP40coord: 2..186
IPR026699Exosome complex RNA-binding protein 1/RRP40/RRP4PANTHERPTHR21321PNAS-3 RELATEDcoord: 2..186
IPR037319Rrp40, S1 domainCDDcd05790S1_Rrp40coord: 18..98
e-value: 9.46495E-38
score: 123.524
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 17..115

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000050_piloncontigtig00000050_pilon:283232..283795 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1659.t1Ggra1659.t1Gracilaria gracilis GNS1m malemRNAtig00000050_pilon 283232..283795 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra1659.t1 ID=Ggra1659.t1|Name=Ggra1659.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=188bp
MRYESNRNKLWIANNQKRYVPALEDPVIGIVQDRFADEYRLDINGSDTAT
LPMLAFEGATKKNRPNLSIGSLVYCRIVRASKNMETEVSCVEPGSTKSWS
GGETLYGELQGGTIVQVSLGMAKTLVRDETVLRMLGRVPFQSAVGVNGRI
WIEAGNVEHTMLLSLALKKADAMQADEWRDYVRRLFS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036612KH_dom_type_1_sf
IPR004088KH_dom_type_1
IPR026699Exosome_RNA_bind1/RRP40/RRP4
IPR037319Rrp40_S1
IPR012340NA-bd_OB-fold