Ggra1643.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra1643.t1
Unique NameGgra1643.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length1147
Homology
BLAST of Ggra1643.t1 vs. uniprot
Match: A0A2V3IJC1 (Ubiquitin-like domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IJC1_9FLOR)

HSP 1 Score: 726 bits (1874), Expect = 5.870e-241
Identity = 508/1199 (42.37%), Postives = 703/1199 (58.63%), Query Frame = 0
Query:    5 INVTVRLPFSSDQTLHVPTSTTIAELIIRVLRQA-PDVQHQGSAQCIMYRGRILDDERTLSDLDIPNDAVLQIMPRPHRVVHRLRGADSGMHDPMWERQEDLEHEXXXXXXXXX----TNVLISHVGFNNRRAQYSDIREMLVSLFQALGFSTNAINGTASIAAAMLISFDSGIERGHPSRPMLEAAWSAVRALQQQMSASVTNSNSNRPQTQAS--NDGHTSSSGASATPSHAPQTQTNPLTVSRSATPSTRAPPQPGTSEAPGRASSVHQLGSS-----TYEAGASSDLFTSAPSISVLPPHPPADNQNISDRFASARTADRLIPALGQLLSNLEYRLRVAPSFSAVIQGERVQDIAHLTELIGATAGSMTAVATLISSTLPDEXXXXXXXXXXXXXXXXXXXXXXXXXXXXSASAGGANPSSSNQEGEANAPNSSQAQ-TGTGATPSTTGGR-----GNSQRSGGTXXXXXXXXXXXXXXNASR--------------LRIPH---------NHSDDGEEEGNYDSYQELNASFLVRFVGYYYHSLAGADSADDSCPDDSSEGTAVDVLRGLYGNVGCDEPLNPFLRVLYYVMEMLTPLDFHKVCRGDFSPIAECRHDVWEIIEEELSEVAEDFIGPDDFEDYFVYFICEKLHIFIHIFDSHNRDNEGSLHDGDEDDICRHTMHFIHRMMLLLVDIFTGDMGDDEFATKLQDWFSDSFAGVVHALGEQTGQDWDSVIFAFRQACNEVGVAVLGGQCSIIFPLILNLFLVRARAAYDRIISESNGRRDMNGVTQDNEQQESEAED-DENDFDHSNCGPECPSRQAQXXXXXXXXXXXXXXXXXXEREFEANRRSTRNH--GVHSDED--LPDLVSDSDENASTDDGNFANSRNSFNRRTPT-NSTHQGTASG---PVRDTMEINQNVELDDQDFDDIVAELSRE----IESNSAKPNHAANDSXXXXXXXXXXXXXXXXXXXXXXXXSNQSGDQENIA---KEKPSTNAIGSSTTLPAASMRRGAHVGPSLSTRRSPFVGSSRGHTSFSSTAVPITRRSTNYSGSSLTQAADEFDVLGKVAAKRWRSIVRNDENRMSVAAHDLLSRGYRYDVEPQRRLNDGTALKIVEEGLEAAAREVPVTVSERKELEGILRESSAECLEYIESEIQSRILDESDFSSNAYPSATSRFLGCEDTPE 1146
            INVTVR PF+ D  L +PT  T+ ELI+RV R A P  Q     +CI+Y GR+LDD +TLS   IP++AVL  M RP R   + R      H      + D  H XXXXXXXXX    TNVLISHV FN+RR Q++DIREMLVS+  ALGFSTNA+N  AS AAA+++SFDS +ERGHPSR +LE+ W+ +R +QQQ+S++  N+  N+    AS  N+  +S+   S+ P+                  ST  P +P +S+     S   QL S      T   G +     S P +S+LP +PP ++ + +DR ASA  ADRL+PAL  +++ LE  +R APS   V QGER++D++ LT+L+G TAG+MTAVA L+S+ LP                               AS G  + +  +Q  +++ P  S+    GT A+  T+        GN  RS    XXXXXXXXXXXXX +                 R PH         +  D  EE   Y  Y+E NA F+VR V YYY SL G D   DSCP++    TA  VL  LYGN G +EPLNPFLR+LY++ME +TP  FH VCRG+F P+AE R ++WEII EEL EV+E+++  DDF+ YFV F+ +KLH  IH+FD+ NR NE         D C  TM+ +HR +++LVDI +GD+G++E+A +L +WF+++FA +  +LG + G +W+ ++  FR+  NE+G++V+G Q S++FPLILNLFL RA+ AYDR+ S S  RR+    + + E   S++ED D  DFDHS+CGP C  RQA+                   RE  AN+ S      G HSD D  +PDL+S SDE++  +  +++ S        P  NS H     G   P+ D ME++ +VELD++DFDDI  EL+RE    +E  +  P +   + XXXXXX                   N S   E +A   ++ P T  + S+T   ++S+R  A VG   +   S    S+ GH SFSSTAVP  RRSTN    S +Q++DEF VLG   AK WR+IVRNDE R++ + +  LSRGYR+DVEP ++L+   A+++V + ++AAA +VP+T SE+KE++ IL+E+S ECLE++ESE++SR+L++ DF S+ YPSATSRFL   D PE
Sbjct:    4 INVTVRTPFAGDTNLTIPTDATVEELILRVARLASPGSQQPPEPRCIVYSGRVLDDSQTLSQAGIPDNAVLHFMRRPRRSAQQQRNHQHPDHANWSGSETDSPHXXXXXXXXXXXXXXTNVLISHVAFNHRRPQFTDIREMLVSVLHALGFSTNAVNSAASAAAALIVSFDSPLERGHPSRSVLESTWTTLRNVQQQVSSNTINTRINQTHAPASIVNNRTSSTIHPSSLPAXXXXXXXXXXXXXXXXVQST--PTEPRSSQDLDTISETRQLSSDPPLPGTQSNGTTEQPTPSLPPLSLLPENPPQESADQTDRLASASAADRLMPALADIITRLEPLIRNAPSLVRVAQGERLEDVSQLTQLMGGTAGAMTAVAMLLSTVLP---------------------APNERENDSDASMGFGHNNRPDQRRDSSGPPPSRPDGQGTSASNRTSSMNRGYESGNDDRSSRNTXXXXXXXXXXXXXXSPAAAHRSETEGLRDMAFRDPHAAMHFAEITSGEDRDEENEQYQVYREKNADFVVRLVSYYYWSLTGVDVPMDSCPNELGV-TATTVLDELYGNGGLEEPLNPFLRILYFMMEFITPRQFHDVCRGNFLPLAEMRDELWEIIMEELVEVSEEYVELDDFQTYFVAFVSDKLHTLIHVFDALNRGNEDLRGLPMMSDFCLRTMNVVHRQVVVLVDILSGDLGEEEYAARLCEWFTNAFASIAFSLGREMGLEWEPLVNIFRRVMNEIGISVVGRQFSVVFPLILNLFLERAKTAYDRLASAS--RREGVRGSDNEEHGGSDSEDVDFADFDHSDCGPGCLVRQAEL------------------RETRANQTSDLRDAAGNHSDSDDGIPDLISSSDESSEEEASSYSQSP-----AIPIPNSEHPANQRGVNAPITDRMEVDPDVELDERDFDDIAEELTRELGPGVEPRAPTPEYTDAEXXXXXXXLEKEARSLP----------NNSHSNEPVAARPQQPPGTKKVPSTTRASSSSIRSQARVGFPAAQPVS-LRSSALGHASFSSTAVPFARRSTNDRRLSSSQSSDEFGVLGSSEAKVWRNIVRNDETRIAGSRYKPLSRGYRFDVEPPQKLDRKKAVELVGQSVDAAATKVPITPSEKKEIQRILQENSHECLEHVESEVRSRLLEDEDFDSDVYPSATSRFLAWADMPE 1142          
BLAST of Ggra1643.t1 vs. uniprot
Match: A0A2V3J6G7 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J6G7_9FLOR)

HSP 1 Score: 152 bits (384), Expect = 4.560e-38
Identity = 78/150 (52.00%), Postives = 114/150 (76.00%), Query Frame = 0
Query:  997 FSSTAVPITRRSTNYSGSSLTQAADEFDVLGKVAAKRWRSIVRNDENRMSVAAHDLLSRGYRYDVEPQRRLNDGTALKIVEEGLEAAAREVPVTVSERKELEGILRESSAECLEYIESEIQSRILDESDFSSNAYPSATSRFLGCEDTPE 1146
            F+ST VP  RRSTN    S +Q++DEF VLG   AK WR+I RND+ R++ + +  LSRGYR+DVEP R+L+   A++++ + ++AAA +VP+T SE+KE++ IL+E+S ECLE++ESE++SR+L++ DF S+ YPSATS+FL   D PE
Sbjct:   75 FTSTVVPFARRSTNDRRLSSSQSSDEFGVLGSSEAKMWRNIFRNDKTRIAGSRYKPLSRGYRFDVEPPRQLDRKKAVELLRQSVDAAATKVPLTPSEKKEIQLILQENSHECLEHVESEVRSRLLEDEDFDSDVYPSATSQFLAWADMPE 224          
BLAST of Ggra1643.t1 vs. uniprot
Match: A0A2V3IF02 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IF02_9FLOR)

HSP 1 Score: 150 bits (378), Expect = 2.900e-37
Identity = 93/212 (43.87%), Postives = 138/212 (65.09%), Query Frame = 0
Query:  941 NQSGDQENIA---KEKPSTNAIGSSTTLPAASMRRGAHVG---PSLSTRRSPFVGSSRGHTSFSSTAVPITRRSTNYSGSSLTQAADEFDVLGKVAAKRWRSIVRNDENRMSVAAHDLLSRGYRYDVEPQRRLNDGTALKIVEEGLEAAAREVPVTVSERKELEGILRESSAECLEYIESEIQSRILDESDFSSNAYPSATSRFLGCEDTPE 1146
            N S   E ++   ++ P T  + S+    ++S+R    VG     L + RS    S+ GH SFSSTAVP  RRSTN    S +Q++DEF VL    AK W++IVRNDE R++ + +  LSRGYR+DVEP ++L+   A+++V + ++A A  VP+  S++KE++ IL+E+S ECLE++ESE++SR+L++  F S+ YPSATSRFL   D  E
Sbjct:   17 NNSYSNEPVSARPQQPPGTKKVPSTARASSSSIRSQVRVGFPAAQLVSLRS----SALGHASFSSTAVPFARRSTNDRHLSSSQSSDEFGVLESSEAKVWQNIVRNDETRITGSRYKPLSRGYRFDVEPPQKLHCKKAVELVGQSVDAPATTVPIKPSKKKEIQRILQENSHECLEHVESEVRSRLLEDEHFDSDVYPSATSRFLAWVDMLE 224          
The following BLAST results are available for this feature:
BLAST of Ggra1643.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3IJC15.870e-24142.37Ubiquitin-like domain-containing protein n=1 Tax=G... [more]
A0A2V3J6G74.560e-3852.00Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3IF022.900e-3743.87Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 754..774
NoneNo IPR availableGENE3D3.10.20.90coord: 2..86
e-value: 2.9E-8
score: 35.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 840..877
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 197..306
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 400..465
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 815..980
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 934..968
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 752..793
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 913..927
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 815..831
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 197..288
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 375..490
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..712
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 736..1146
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 713..735
NoneNo IPR availableCDDcd17039Ubl_ubiquitin_likecoord: 7..77
e-value: 1.61932E-9
score: 52.9838
IPR000626Ubiquitin-like domainPFAMPF00240ubiquitincoord: 8..78
e-value: 4.8E-6
score: 26.2
IPR000626Ubiquitin-like domainPROSITEPS50053UBIQUITIN_2coord: 5..77
score: 11.964792
IPR029071Ubiquitin-like domain superfamilySUPERFAMILY54236Ubiquitin-likecoord: 3..80

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000050_piloncontigtig00000050_pilon:245377..248817 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1643.t1Ggra1643.t1Gracilaria gracilis GNS1m malemRNAtig00000050_pilon 245377..248817 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra1643.t1 ID=Ggra1643.t1|Name=Ggra1643.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=1147bp
MASAINVTVRLPFSSDQTLHVPTSTTIAELIIRVLRQAPDVQHQGSAQCI
MYRGRILDDERTLSDLDIPNDAVLQIMPRPHRVVHRLRGADSGMHDPMWE
RQEDLEHEHHHIHEHVHTNVLISHVGFNNRRAQYSDIREMLVSLFQALGF
STNAINGTASIAAAMLISFDSGIERGHPSRPMLEAAWSAVRALQQQMSAS
VTNSNSNRPQTQASNDGHTSSSGASATPSHAPQTQTNPLTVSRSATPSTR
APPQPGTSEAPGRASSVHQLGSSTYEAGASSDLFTSAPSISVLPPHPPAD
NQNISDRFASARTADRLIPALGQLLSNLEYRLRVAPSFSAVIQGERVQDI
AHLTELIGATAGSMTAVATLISSTLPDEDDDENDRNRRSSSRHNSSSQRR
RQSRAQSASAGGANPSSSNQEGEANAPNSSQAQTGTGATPSTTGGRGNSQ
RSGGTNRTGGPRNRGNRHGNASRLRIPHNHSDDGEEEGNYDSYQELNASF
LVRFVGYYYHSLAGADSADDSCPDDSSEGTAVDVLRGLYGNVGCDEPLNP
FLRVLYYVMEMLTPLDFHKVCRGDFSPIAECRHDVWEIIEEELSEVAEDF
IGPDDFEDYFVYFICEKLHIFIHIFDSHNRDNEGSLHDGDEDDICRHTMH
FIHRMMLLLVDIFTGDMGDDEFATKLQDWFSDSFAGVVHALGEQTGQDWD
SVIFAFRQACNEVGVAVLGGQCSIIFPLILNLFLVRARAAYDRIISESNG
RRDMNGVTQDNEQQESEAEDDENDFDHSNCGPECPSRQAQEENDFDHSHC
GSECPVRREREFEANRRSTRNHGVHSDEDLPDLVSDSDENASTDDGNFAN
SRNSFNRRTPTNSTHQGTASGPVRDTMEINQNVELDDQDFDDIVAELSRE
IESNSAKPNHAANDSDADFKELAMELEKEAATGPNKGSHSNQSGDQENIA
KEKPSTNAIGSSTTLPAASMRRGAHVGPSLSTRRSPFVGSSRGHTSFSST
AVPITRRSTNYSGSSLTQAADEFDVLGKVAAKRWRSIVRNDENRMSVAAH
DLLSRGYRYDVEPQRRLNDGTALKIVEEGLEAAAREVPVTVSERKELEGI
LRESSAECLEYIESEIQSRILDESDFSSNAYPSATSRFLGCEDTPE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000626Ubiquitin-like_dom
IPR029071Ubiquitin-like_domsf