Ggra1367.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra1367.t1
Unique NameGgra1367.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length275
Homology
BLAST of Ggra1367.t1 vs. uniprot
Match: A0A2V3J2Z6 (EAF domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J2Z6_9FLOR)

HSP 1 Score: 160 bits (405), Expect = 1.850e-44
Identity = 95/218 (43.58%), Postives = 127/218 (58.26%), Query Frame = 0
Query:    7 PPSPSLAVRYPLKLGRSIRKPATARSFVQLKFSHVGAAVDAHGAGALHPARDGCSVALRARNHPAKCMWYACQRVRTLSAAANYVLLFSADAFWLERVDDVFVSTRAGSLRA-AVDVPPVAHDEFANEPDSWMHVGPDSGSPVTPDGNDG---EEEAAVRATSGGKSTPQLAVRKMAPXXXXXXXXRTLQRMQPLVPP---RPHAVKTVSHKTPSQRH 217
            P +P   VRYP+KLG+SI KP  ARS + L+FSHV + V  H AG L PA++ C+V L   N P++   + CQR +  S   NY L+F+ +AFWLERVDDVF   +AG++ +    VP    D  AN+PDSWM +   SGSP+TP+GN+G   ++   +R+  GGKS P  + R+M           T     P  PP   RP AVKTV  K P+  H
Sbjct:   11 PHAPQPGVRYPIKLGKSIVKPNNARSLLSLRFSHVPSIVHPHAAGVLIPAQNACAVELPLSNQPSRAARFDCQRAQRKSDVRNYALVFAKNAFWLERVDDVFNFAKAGTINSQTTPVPAAPVDRVANDPDSWMDIDSPSGSPITPEGNEGAPVDDHPPIRS-HGGKSIPVYSDRRMV-SARGMQSLHTSTAAAPASPPPATRPEAVKTVPTKAPTIVH 226          
BLAST of Ggra1367.t1 vs. uniprot
Match: R7QUR2 (EAF domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QUR2_CHOCR)

HSP 1 Score: 71.2 bits (173), Expect = 7.780e-11
Identity = 57/204 (27.94%), Postives = 87/204 (42.65%), Query Frame = 0
Query:    9 SPSLAVRYPLKLGRSIRKPATARSFVQLKFSHVGAAVDAHGAGALHPARDGCSVALRARNHPAKCMWYACQRVRTLSAAANYVLLFSADAFWLERVDDVFVSTRAGS---LRAAVDVPPVAHDEFANEPDSWMHVGPDSGSPVTPDGNDGEEEAAVRATSGGKSTPQLAVRKMAPXXXXXXXXRTLQRMQPLVPPRPHAVKTVS 209
            +P L VRYP K+G+S++    +R  + L FS +           L P +D C V L   +  +   +   +R    S+  +Y+L+      WLE+  D+F S R       R   + P   H +  + P+SW    PDSGSP+TP     E++AA   T      P       +         R + R   + PPRP A  + S
Sbjct:    6 APKLGVRYPFKIGKSLKTNHASRDMLALTFSLIPQKATLSQPAVLTPHKDTCLVQLPTADRASSVHFSGTRRRHGDSSVHDYLLVLVDGKIWLEKASDLFYSIRPTDSHLTRPPPEYPAEPHHD--SSPESWR---PDSGSPITP-----EDDAAAMYTGHAALAPTPGTAGKSTPPPIGSRGRLVIRGGRVAPPRPPAAVSPS 199          
The following BLAST results are available for this feature:
BLAST of Ggra1367.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3J2Z61.850e-4443.58EAF domain-containing protein n=1 Tax=Gracilariops... [more]
R7QUR27.780e-1127.94EAF domain-containing protein n=1 Tax=Chondrus cri... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019194Transcription elongation factor Eaf, N-terminalPFAMPF09816EAFcoord: 16..108
e-value: 3.3E-7
score: 30.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 130..274
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 177..195
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 225..261

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000092_piloncontigtig00000092_pilon:388726..389550 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1367.t1Ggra1367.t1Gracilaria gracilis GNS1m malemRNAtig00000092_pilon 388726..389550 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra1367.t1 ID=Ggra1367.t1|Name=Ggra1367.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=275bp
MASSSTPPSPSLAVRYPLKLGRSIRKPATARSFVQLKFSHVGAAVDAHGA
GALHPARDGCSVALRARNHPAKCMWYACQRVRTLSAAANYVLLFSADAFW
LERVDDVFVSTRAGSLRAAVDVPPVAHDEFANEPDSWMHVGPDSGSPVTP
DGNDGEEEAAVRATSGGKSTPQLAVRKMAPPPSPPPPPRTLQRMQPLVPP
RPHAVKTVSHKTPSQRHARAQSDSDDDDDNDDDDDDDDELEDASSSDDDA
SSDDTDSSDSADSAEYTDRSSDED*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019194Tscrpt_elong_fac_Eaf_N