Ggra1345.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra1345.t1
Unique NameGgra1345.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length786
Homology
BLAST of Ggra1345.t1 vs. uniprot
Match: A0A2V3J202 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J202_9FLOR)

HSP 1 Score: 441 bits (1135), Expect = 2.740e-146
Identity = 230/332 (69.28%), Postives = 267/332 (80.42%), Query Frame = 0
Query:  452 MASSNSNYARIVTSIEKVRQEITLFRAQLTHILSANPTPATRSAARELFNHIKANEALLEKADAKVQRLRLAGRLVSRPTVPVPASKRAKRALSVLSAADADLRDARSVRRKTVRPKYLTLAGKKPATPIREEELAALFKRASQTASANLVMLKNGGVMFDWRHIFSAYIWFKDVSPPSDAKPKADGKPAGYVVPEHIACFRTDEAGAGRWSRSVHAVFNVMTERAQAAIRYFMAREDTGEEAFIELILWLVKHNDMFSAKCDERRLAFDASRGIFLPPCVHPFDGSGPARFTRGTIPVRSTSAPQNTRASQSAQQGRGQMSAAVHASQMAR 783
            MAS+NS  A+   +I++V+QEI LF+AQ+T I +    P TR+AAREL NH+KA+E  LEKA+AKVQRLR  GR++SRPTVPVPAS+RAKRAL++L+AAD  L   RSVR+KT RP+YLTLAGKKPATPIREE+L AL KR SQ  S N+ +LK   V  DWRHIFSA IWFK+V  P DA+PK  GK   YVVPEHIACFRTDE  A RWS S HAVFNVMTERAQAAIRYFMARE+TGE+AF+ELILWLVKH+++FSAKCD+RRLAFDASRGIFLPPCVHPFDGSGPARFTRGTIPVR+TS  Q+  A  S QQ  G  +AA H S + R
Sbjct:    1 MASNNSVVAKTAANIDRVKQEINLFKAQITQIATPTAAPETRNAARELLNHVKASEINLEKAEAKVQRLRPIGRVLSRPTVPVPASERAKRALTILNAADPSLAHGRSVRQKTARPRYLTLAGKKPATPIREEDLPALLKRTSQLVSTNITILKTSAVTLDWRHIFSACIWFKEVPAPKDAQPKPGGKSPVYVVPEHIACFRTDE-NASRWSCSDHAVFNVMTERAQAAIRYFMAREETGEDAFVELILWLVKHHNIFSAKCDDRRLAFDASRGIFLPPCVHPFDGSGPARFTRGTIPVRNTSTQQSRLAHPSQQQS-GTHAAAGHPSHLPR 330          
BLAST of Ggra1345.t1 vs. uniprot
Match: A0A2V3J5U7 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J5U7_9FLOR)

HSP 1 Score: 296 bits (757), Expect = 1.810e-87
Identity = 187/536 (34.89%), Postives = 247/536 (46.08%), Query Frame = 0
Query:   44 FGPPPVPESIKRLDVLEFQRRQESTPNPSLPPEVLQSLLDKYPRIKKFHEAMQEEMRRDDYDPNDYRVYSWAYNYLRPRGMGRPLQALIAFLVSYATVKLVQYVRSRVSQVTVMNALVSVDTFSTAVFAGIVP-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KGIYQPNHHPDEIKSSLAAPNPDVSFRASPPMMLRPDEDQLATNVGVMAYKDMPVFAYLDREQEIMKQTGVTEWLKHRAKQIPAHSEEEKEERDEKALLSWARPLEPEEEKLSIEDYFATVEDDEYFYDPTTGNWLFVDG---AKGREDGEGGAKDNAQNGWDLNADDDETLDIPAEWEPMIQRMLDSN-NRVRDGKVESQDDEDSGSPP 382
            FGPPP+P+SIKRLD  E +RRQ+  PNP LPP   +SL D+YP ++K HEAM  EM  DDYDP DYRVYSWAY  LRP  +G PL +LI    ++A VKL+QY+R+ + +  + N LV+ DT +T V  G +P                                                                                                                                                                                                 KGIYQPN HPDE K SL+AP+P +SF  SP MMLRP +D  ++ V  ++  +MPVFAYL +E+E+MK TG+TEWLK R++Q+PA+ +E + ERD  ALLSWARPL+PEEE+LSI+DY  TVEDDEY YDPTTGNW+F D    +  R+DG     D  Q  ++LN ++DE ++IP EWEP+++RML+ N     + + + Q D+DS SPP
Sbjct:    2 FGPPPIPDSIKRLDEFELERRQKPMPNP-LPPHFFESLFDQYPSVRKVHEAMTREMASDDYDPEDYRVYSWAYQQLRPTAIGLPLLSLIVGTTAFAIVKLIQYIRANLEKQILANMLVTADTVATGVLTGFIPVILLSWAWQKAHFNDVRTDGVRRSVTMFCLTALALPAVWAMSATTNVTLGIACALFVRFMLAFSIWGWVDLRREAFLGDALLARVYKAWRSCLTVGVLIFGSLLRSMAFLAPHEVPVKEVFGRHANSLRQALGKRFPVACSLCNDPRGLFLAGGLAIIALVSYVLYLAVFVTEFYQINCHRRCESPLTSLFVKKGIYQPNRHPDESKGSLSAPDPSMSFHPSPAMMLRPTKDWDSSTVQPLSGTNMPVFAYLKKEEEVMKTTGLTEWLKPRSEQVPAYDDESRMERDLDALLSWARPLKPEEEELSIDDYVQTVEDDEYMYDPTTGNWIFTDDLAESGKRKDGMDDRSDKMQP-FELNGEEDEMVEIPPEWEPLVKRMLEKNAEHPFENQDDQQVDDDSDSPP 535          
BLAST of Ggra1345.t1 vs. uniprot
Match: R7QC80 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QC80_CHOCR)

HSP 1 Score: 231 bits (590), Expect = 4.050e-65
Identity = 134/301 (44.52%), Postives = 182/301 (60.47%), Query Frame = 0
Query:  481 THI--LSANPTPATRSAARELFNHIKANEALLEKADAKVQRLRLAGRLVSRPTVPVPASKRAKRALSVLSAA-----------------DADLRDA---RSVRRKTV----RPKYLTLAGKKPATPIREEELAALFKRASQTASANLVML-KNGGVMFDWRHIFSAYIWFKDVSPPSDAKPKADGKPAGYVVPEHIACFRTDEAGAGRWSRSVHAVFNVMTERAQAAIRYFMAREDTGEEAFIELILWLVKHNDMFSAKCDERRLAFDASRGIFLPPCVHPFDGSGPARFTRGTIPVRSTS 754
            THI  L+   T A R   + L    +  EA L K +  + R +   R+ +RPT   P S RAKRALSVL                      D+ D    R VRRKT     +P  L+  GK  ATPIR++ +AA  KRA++    +LV +  + GV+F+ R++F AY+WFK V PP++ +  A+ + + Y VPEHIA F  DE    RWSRS + VFNV++ERA AAIR++M RE TGE+AF+ L+ WL +H  +F+AKC+ RR+AFDASRG+FLPPCV+PF+     RFTRG+IP+R  S
Sbjct:    4 THIGQLARPETTADRDVLKTLIQRTQRLEAHLHKVEVTLTRSKPGPRIPTRPTASTPPSIRAKRALSVLLTGLNSSNCAKRLGNMAGHDSPDITDDERDRIVRRKTEAIVGKPILLSSTGKVKATPIRDDSIAATLKRAARGTDLSLVQIHSSNGVLFECRNVFRAYMWFKQVDPPTEKRTPAELRHS-YNVPEHIAFFGIDERNISRWSRSQYGVFNVVSERANAAIRFYMNRETTGEDAFVALVKWLSRHKSLFTAKCERRRVAFDASRGMFLPPCVYPFEEDASPRFTRGSIPLRHIS 303          
BLAST of Ggra1345.t1 vs. uniprot
Match: A0A7S1TCL9 (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TCL9_9RHOD)

HSP 1 Score: 90.1 bits (222), Expect = 6.940e-16
Identity = 82/301 (27.24%), Postives = 129/301 (42.86%), Query Frame = 0
Query:  484 LSANPTPATRSAARELFNHIKANEALLEKADAKVQRLR-LAG---RLVSRPTVPVPASKRAKRALSVLSAADADLRDARSVRRKTVRPKY-LTLAGKKPA-------------TPIREEELAALFKRAS-QTASANLVMLKNGGVMFDWRHIFSAYIWFKDVSPPSDAKPKADGKPAGYVVPEHIACFRTDEAGAGRWSRSVHAVFNVMTERAQAAIRYFMAREDTGEEAFIELILWLVKHNDMFSAKC--DERRLAFDASRGIFLPPCVHPFDGSGPARF---TRGTIPVRSTSAPQNTR 760
            +  +PT A R A  +  N +   + L+ + D      + LAG   ++ SR +    A K  +     L +    +   R +     + +Y L + G  PA             TP+R+E+L  +    S +  S   + +   G+       F A IWF D        P A     G + PEH+      E    RWS S H VF +++ERA AA  +F  ++ +G ++   L+ WL  H+ +   +   D R LAFD+SRG +LPPCV  F+ +   R     RGT        P++ R
Sbjct:    1 MGVSPTDAAREAVMKARNDLNVVKQLVSRLDTSESHAQVLAGIKAKIESRESTLANAEKAVEATRIRLRSQTQGVPRQREILNPIQQARYALAVIGNGPALGPLPKAERKATLTPLRQEQLINVINALSTRLPSFMSLQVAPNGMHVTVHDTFIAGIWFTD-------SPFAGVMIEGTLEPEHVNVVGRREP-LSRWSVSQHTVFRLLSERATAAAYFFWRKDISGVDSLFRLLDWLGIHSKLLQDQSVEDSRHLAFDSSRGTYLPPCVRGFEDNRSGRSGYEERGTRTTEDARGPRHPR 293          
The following BLAST results are available for this feature:
BLAST of Ggra1345.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2V3J2022.740e-14669.28Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3J5U71.810e-8734.89Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7QC804.050e-6544.52Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A7S1TCL96.940e-1627.24Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 503..523
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 357..390
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 742..778
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..44
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 362..376
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 747..774
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 431..453
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 22..37
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 128..147
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..127
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 148..785
IPR021627Mediator complex, subunit Med27PFAMPF11571Med27coord: 661..736
e-value: 5.1E-8
score: 33.2

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000092_piloncontigtig00000092_pilon:260027..263876 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1345.t1Ggra1345.t1Gracilaria gracilis GNS1m malemRNAtig00000092_pilon 260027..263876 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra1345.t1 ID=Ggra1345.t1|Name=Ggra1345.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=786bp
MRTGFIHPFSNPRLRTSRKRPRATCCTASNASRSDEVPKFSSRFGPPPVP
ESIKRLDVLEFQRRQESTPNPSLPPEVLQSLLDKYPRIKKFHEAMQEEMR
RDDYDPNDYRVYSWAYNYLRPRGMGRPLQALIAFLVSYATVKLVQYVRSR
VSQVTVMNALVSVDTFSTAVFAGIVPKGIYQPNHHPDEIKSSLAAPNPDV
SFRASPPMMLRPDEDQLATNVGVMAYKDMPVFAYLDREQEIMKQTGVTEW
LKHRAKQIPAHSEEEKEERDEKALLSWARPLEPEEEKLSIEDYFATVEDD
EYFYDPTTGNWLFVDGAKGREDGEGGAKDNAQNGWDLNADDDETLDIPAE
WEPMIQRMLDSNNRVRDGKVESQDDEDSGSPPTVYVRPSPSEHLDLAITH
HQAVLKNLCIRSLSLPEQTIAPQKASLSPVAAPATLNATNQPPSRAARPA
KMASSNSNYARIVTSIEKVRQEITLFRAQLTHILSANPTPATRSAARELF
NHIKANEALLEKADAKVQRLRLAGRLVSRPTVPVPASKRAKRALSVLSAA
DADLRDARSVRRKTVRPKYLTLAGKKPATPIREEELAALFKRASQTASAN
LVMLKNGGVMFDWRHIFSAYIWFKDVSPPSDAKPKADGKPAGYVVPEHIA
CFRTDEAGAGRWSRSVHAVFNVMTERAQAAIRYFMAREDTGEEAFIELIL
WLVKHNDMFSAKCDERRLAFDASRGIFLPPCVHPFDGSGPARFTRGTIPV
RSTSAPQNTRASQSAQQGRGQMSAAVHASQMARRV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR021627Mediator_Med27