Ggra1305.t2 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra1305.t2
Unique NameGgra1305.t2
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length606
Homology
BLAST of Ggra1305.t2 vs. uniprot
Match: A0A2V3IHL4 (THO complex subunit 5-like n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IHL4_9FLOR)

HSP 1 Score: 783 bits (2022), Expect = 3.220e-279
Identity = 404/602 (67.11%), Postives = 489/602 (81.23%), Query Frame = 0
Query:    1 MASTVSNDEKSMSLLLEGSKHAISTLRDSILVTSRDNALNLMSSSSENGGPKSSESSESHLRGISRSLVTQFVSLKSSHDLLIRQVDNSRKESRKEQDKLLNARSRLDNLKYEMRMLQDEIESCETGSSSHMKKLDLQIPS-APTVEDDGSAKHQHTMDTLSNELLRRKAAQKQLEAVLDVVKLKRKELENTKSALRGLPTLLGSLDNDLKPLRTLIHKKPVKYTTSPTIPEAQQLPAPLYVLTRQAMGYRDSFGDLSVSILGDAPKRPLRKDPYAVHPMRVQIDVHCNGIEQALRVKFSYHVNLNIVSVSSVIVADGTETPSYPTKELQMLYPFDFGEESPNPGNAYLERGTFKFDISKAHGSRPFVWANVVCGITSMLPIESHKARIVDQFQFAKWPSRAMEISGHVRFKDVFETLKSRLKSIVSLKKQIELLLSKSLPVVPAGIGIRTEPKSKLEDFVKLPPQDWAGDERLAREGTGGKYTEVWCMVISREALRINCMIGIEPDYPIGPPVFRLVCDKGSEFVSEMDVLDLERCVNELSGSEKLKGHEELLLGAQIIALLSYLDRLYNVSFGVDDDEIGTQSKVINGRTRSKRSSMMSG 601
            M S +S     + L LE ++ AIS +RDSI+ +S+   +   S++ E       +SS+   R +SR L+  F++LK+SHDLLI+QVD +RK SR EQDKLLNARSRLDNL YE +MLQDEI  CETG  +H++KLD+ IP  +   +DDG+  HQ TM+ LS ELL+RKAAQK+++++L V K KRKEL++TKSALR LP LL SL NDLKPLR L   KP+  +++  + +AQ LPAPLYVL RQA+GY +++G+LSVSI G+  K+ +RKD YA HPMRVQIDV C GI Q+LRVKF YH NL+IVSVSSVIVADGTETPSYPTKELQMLYP+DFGEESP+ GN+YLERG+F+FD++KAHG RPFVWANVVCGITSMLP ES+ AR+ ++ QFAKWP  AME+SGH+RFKDV ETL++RLKSIVSLKKQIELLLSK LPV+PA IG+ TEPKSKLEDFVKLPPQDWAGDERLAREGTGG+YTEVWCMVISR++LRINCMIGIEPDYP GPPVFRLVCDKGSE  SE DVLDLERCVNE+S SE +KG EELLLGAQI ALLSYLDRLY+VS  ++D +   ++  +NGR RSKR+S++SG
Sbjct:    1 MTSCLSKLSDDVRLSLEKAQSAISAIRDSIMWSSKTQ-IGFDSTAKE-------QSSQDEFRDMSRKLLGHFITLKTSHDLLIKQVDEARKNSRIEQDKLLNARSRLDNLMYETKMLQDEINLCETGPQAHVQKLDVPIPDFSSQSDDDGARAHQRTMEALSEELLKRKAAQKEVDSILQVAKKKRKELDDTKSALRDLPNLLSSLANDLKPLRALGQNKPMAQSSNTLLSQAQHLPAPLYVLARQAVGYSEAYGNLSVSITGEGSKKQVRKDIYAQHPMRVQIDVLCEGIPQSLRVKFGYHTNLHIVSVSSVIVADGTETPSYPTKELQMLYPYDFGEESPSAGNSYLERGSFRFDVTKAHGCRPFVWANVVCGITSMLPTESYNARLENESQFAKWPVTAMELSGHMRFKDVCETLRTRLKSIVSLKKQIELLLSKRLPVLPADIGLTTEPKSKLEDFVKLPPQDWAGDERLAREGTGGRYTEVWCMVISRDSLRINCMIGIEPDYPFGPPVFRLVCDKGSEIASEKDVLDLERCVNEVSTSENVKGREELLLGAQITALLSYLDRLYDVSSNLEDGDSEGRAMGVNGRARSKRASILSG 594          
BLAST of Ggra1305.t2 vs. uniprot
Match: R7QLX8 (THO complex subunit 5 homolog n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QLX8_CHOCR)

HSP 1 Score: 279 bits (714), Expect = 1.330e-82
Identity = 173/515 (33.59%), Postives = 281/515 (54.56%), Query Frame = 0
Query:   61 LRGISRSLVTQFVSLKSSHDLLIRQVDNSRKESRKEQDKLLNARSRLDNLKYEMRMLQDEIESCETGSSSHMKKLDLQIPS-AP--TVEDDGSAKHQHTMDTLSNELLRRKAAQKQLEAVLDVVKLKRKELENTKSALRGLPTLLGSLDNDLKPLRTLIHKKPVKYTTSPTIPEAQQLPAPLYVLTRQAMGYRDSFGD-LSVSILGDAPKRPLRKDPYAVHPMRVQIDVHCN---GIEQALRVKFSYHVNLNIVSVSSVIVADGTETPSYPTKELQMLYPFDFGEESPNPGNAYLERGTFKFDISKAHGSRPFVWANVVCGITSMLPIESHKARIVDQFQFAKWPSRAMEISGHVRFKDVFETLKSRLKSIVSLKKQIELLLSKSLPVVPAGIGIRTEPKSKLEDFVKLPPQDWAGDERLAREGTGGKYTEVWCMVISREALRINCMIGIEPDYPIGPPVFRLVCDKGSEFVSEMDVLDLERCVNELSGSEKLKGHEELLLGAQIIALLSYLDRL 568
            +R  S+ ++   V  K +HD +IR+VD++R+ S+ +   L   R R   L YE  +L+ +I++     +  + K+ +++P  AP    E++    H  T+  L  EL +R+  + +++ ++   K KR +L   K  LR LP  + +L N ++P+R L+        + P + + + LP PLYVLTR+A  +R  F   L++S+L +  K    +  Y  HP  V++D+      G    L+V F +H  L++V+V+S I      +     K LQ+L+P+D GE SPNP N++LE G F FD+SKA G+RPFVWAN++CG+  +   ++     V++   A WP+ A     H+RFK+   +L++RL   V+L+KQ+E L +K +P+    +G   EP+++LE F K   +D      L  +     + EVW M +    L + C +GI  +YP G P FRL  +K    +SE D+L LE+ VN       L+   ELLL  QI+ LL  +D+L
Sbjct:   44 IRRPSQKILAYTVMAKVAHDAIIRKVDSARRNSQADIAMLQKLRQRSACLGYERMLLERQIDAQRAVKAPTVDKVSVKLPHPAPQNASEEESMDVHIDTIKALCAELQKRQRVRDEVDGLVKRTKRKRDQLVTMKDDLRSLPRAVATLRNAIEPVRKLLKVGEELAASPPELAQIRLLPVPLYVLTREAFAFRTMFPKILNISLLEEQAKL---EGVYRPHPRLVRMDIQAGEHIGAGVCLQVFFRFHPELHVVTVTSRIANSEQPSAKMDGKLLQLLFPYDVGETSPNPCNSHLENGAFSFDVSKAGGARPFVWANLLCGLPCLERFDT-----VNEIVGAGWPTEAAGHEAHIRFKETVLSLQNRLCMEVALRKQLEALQAKRMPIQAGDLGFMVEPEARLEMFAKCKSRDEESKNGLGGDNVNVMFREVWEMRVWSGELTMGCDVGIASNYPTGTPCFRLKLEKEQRDISEADMLRLEQKVNMYKMEGDLEDKRELLLSGQILTLLEGVDKL 550          
BLAST of Ggra1305.t2 vs. uniprot
Match: M2WT23 (Uncharacterized protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2WT23_GALSU)

HSP 1 Score: 133 bits (335), Expect = 6.060e-29
Identity = 131/545 (24.04%), Postives = 242/545 (44.40%), Query Frame = 0
Query:   95 KEQDKLLNARSRLDNLKYEMRMLQDEIESCET--GSSSHMKKLDLQIPSAPTVEDDG----SAKHQHTMDTLSNELLRRKAAQKQLEAVLDVVKLKRKELENTKSALRGLPTLLGSLDNDLKPLRTLIHK-----KPVKYTTSPTIPEAQQLPAPLYVLTRQAMGYRDSFGD-----LSVSILGD-----------APKRPLRKDPYAVHPMRVQIDVHC-------NGIEQALRVKFSYHVNLNIVSVS-SVIVADGTETPSYPTKELQMLYPFDFGEESPNPGNAYLERGTFKFDISKAHGSRPFVWANVVCGITSMLPIESHKARIVDQFQFAKWPSRAMEISGHVRFKDVFETLKSRLKSIVSLKKQIELLLSKSLPVVPAGIGIRTEPKSKLEDFVKLPPQDWAGDERLAREGTGGKY-----TEVWCMVISREALRINCMIGIEPDYPIGPPVFRLVCDKGSEFVSEMDVLDLERCVNELSGSEKLKGHE--ELLLGAQIIALLSYLDRLYNVSFGVDDDEIGTQ---SKVINGRTRSK 594
            K ++++ N++  L+N  Y+   L++EI SC++  G    +  + L+  S     ++G      +HQ  +  L  E  RR++                     ++  L  LP  +  +      + T         +   +    ++     LP PLYVL RQA  ++ +F         + I+GD           + +    ++ Y +HP++VQ+++         + +++ + V FSY + L IV VS S   +DG    +  T++   L+P D G  SPNP N YLE G F+F  SK  G+RPF+WA ++CG+    P E + +      +  +W   A+  S H+    V + L +R   + SL  Q+  L    +PV      +  +P+S+L+ + +L       ++  A   T   +     T  + + I  E++ +  ++ + PDYP+  P + L C +G   + + D+ D+ER +   +  E L+G+   E LL  Q+  L + +D    ++     D +  +    +   GR R+K
Sbjct:   85 KHKEQVQNSQIILENYLYQREQLKEEIASCQSYRGLIDEISLITLEEASLSVPSEEGLDSFEYEHQVMLKRLEAEKERRQSLXXXXXXXXXXXXXXXXXXXXSRQFLENLPKEIEKIHVAANRVSTFFFDYGFAGRFFNFLCEDSLKRMFLLPFPLYVLARQAYAFQHTFQSEQHLHFRMDIVGDTVAAESICDAFSTRWKEHENLYQMHPLQVQLELGGQPKGALDSTLQKTVTVTFSYLLCLEIVVVSCSGNASDG----NLITEQFAFLFPGDDGSHSPNPTNHYLEEGKFQFQPSKVGGARPFIWAQIICGLG--FPFELNLSSSTKDAK--EWLQNALNYSKHIVLGAVIKALVARNYFLQSLSTQLVSLQRLIVPVNAKEAQLPGDPRSELKSWSEL-----IDNQEFASGPTNSSFYSLTGTRKFLLEIQSESIHLRGLVAVCPDYPLTSPYWSLKCIRGP--LQDSDLRDIERELCSFT-DENLEGNALGENLLSIQVKKLQACVDICQEINRPSPHDSMIERPRWDRAFRGRMRTK 613          
BLAST of Ggra1305.t2 vs. uniprot
Match: THO complex subunit 5 homolog B n=1 Tax=Bemisia tabaci TaxID=7038 RepID=UPI0008F9BDFB (THO complex subunit 5 homolog B n=1 Tax=Bemisia tabaci TaxID=7038 RepID=UPI0008F9BDFB)

HSP 1 Score: 81.3 bits (199), Expect = 2.380e-12
Identity = 142/594 (23.91%), Postives = 240/594 (40.40%), Query Frame = 0
Query:   73 VSLKSSHDLLIRQVDNSRKESRKEQDKLLNARSRLDNLKYEMRMLQDEIESCETGSSSH-------MKKLDLQIPSAPTVEDDGSAK-HQHTMDTLSNELLRR-------KAAQKQLEAVLDVVKLKRKELENTKSALRG-LPTLLGSLDNDLKPLRTLIHKKPVKYTTSPTIPEAQQLPAPLYVLTRQAMGYRDSFGDLSVSILGDAPKRPLR------------------------------KDP------------YAVHPMRVQIDVHCNGIEQALRVKFSYHVNLNIVSVS-SVIVADGTETPSY-----PTKELQMLYPFDFGEESPNPGNAYLER--GTFKFDISKAHGSRPFVWANVVCGI-----TSMLPIESHKARIVDQFQFAKWPSRAMEISGHVRFKDVFETLKSRLKSIVSLKKQIELLLSKSLPVVPAGIGIRTEPKSKLE--DFVKLPPQDWAG---DERLAREGTGGKYTEVWCMVISREA----LRINCMIGIEPDYPIGPPVFRLVCD------------KGSEFVSEMDVLDLERCVN--------ELSGSEKLKGHEELLLGAQIIALLSYLD 566
            VSLK  + L   +  N R+E  +++  + +   +L NL YE+  L+ E+  C    S         +++   + P++   ED  S   H+  +  L  ELL+R       K  Q++ E V   +K KR +LEN    L+  L T    LDN        +++ P+          A  LP PLY L  Q++  ++   +  V ++    +  LR                              KDP             A HP+ + I +  N    ++ +KFSY +NL +V+V  SV +++     S      P   L  LYP D+GE SPNP N +  +  G   FD  +A G+ P+ WA  + G+     TS+  IE+ K  I  +                     V + +K RLKS ++L KQI+        +VP  +     PK + E   + ++   ++      +         KY   +  +++R      +++   + +  +YP  PPVF + C             +G   +++  V ++ER VN        +LS S +      +L  AQ++ L+S  D
Sbjct:   99 VSLKKLNRLEKIRTKNLREELHQKKQLVDSYELQLQNLLYELMYLKKEVTKCLQFKSKDEDIELIPVEQFYAEAPNSVKEEDITSQDPHKLRLARLQWELLQRQQLATKCKELQEEKERVTTEIKRKRSQLENLAPLLKTVLATAKPVLDNLGLTAGHSLNEHPL----------ASVLPHPLYFLYVQSVALKEVTDESMVVLINGEEEEALRAKEYVIDSQMLEDSDSDAEPEFQKEERHSWKDPKLDKKAEHLKKLLAEHPLSLTISIPINENGSSISMKFSYLLNLRVVTVRISVQISESIRGISASALLNPFNILSALYPGDYGEISPNPANFHQLKQVGVQSFD-REALGT-PYNWAQKIAGLDFEGCTSVNKIEA-KCSISQE-----------------NLPSVMKAIKRRLKSRIALCKQIQ-DFEVGCVMVPPPLMEHFPPKRQCELTQWRQIAFSEYEALGYTKHFVENAVVTKYDIFFKTLLTRINPGIDVQLYVAVAVRANYPEAPPVFAVCCSNEKNLIPEEIYARGKTALNDECVRNMEREVNCHWNEVVQDLSDSNRAA----VLFTAQMLKLMSCFD 657          
The following BLAST results are available for this feature:
BLAST of Ggra1305.t2 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2V3IHL43.220e-27967.11THO complex subunit 5-like n=1 Tax=Gracilariopsis ... [more]
R7QLX81.330e-8233.59THO complex subunit 5 homolog n=1 Tax=Chondrus cri... [more]
M2WT236.060e-2924.04Uncharacterized protein n=1 Tax=Galdieria sulphura... [more]
THO complex subunit 5 homolog B n=1 Tax=Bemisia tabaci TaxID=7038 RepID=UPI0008F9BDFB2.380e-1223.91THO complex subunit 5 homolog B n=1 Tax=Bemisia ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 100..127
NoneNo IPR availableCOILSCoilCoilcoord: 171..191
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 41..61
NoneNo IPR availablePANTHERPTHR13375:SF3THO COMPLEX SUBUNIT 5 HOMOLOGcoord: 271..598
coord: 42..266
IPR019163THO complex, subunit 5PFAMPF09766FmiP_Thoc5coord: 75..264
e-value: 1.1E-21
score: 77.6
coord: 270..375
e-value: 2.0E-15
score: 57.0
IPR019163THO complex, subunit 5PANTHERPTHR13375FMS INTERACTING PROTEINcoord: 271..598
coord: 42..266

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000092_piloncontigtig00000092_pilon:55217..57034 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1305.t2Ggra1305.t2Gracilaria gracilis GNS1m malemRNAtig00000092_pilon 55217..57034 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra1305.t2 ID=Ggra1305.t2|Name=Ggra1305.t2|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=606bp
MASTVSNDEKSMSLLLEGSKHAISTLRDSILVTSRDNALNLMSSSSENGG
PKSSESSESHLRGISRSLVTQFVSLKSSHDLLIRQVDNSRKESRKEQDKL
LNARSRLDNLKYEMRMLQDEIESCETGSSSHMKKLDLQIPSAPTVEDDGS
AKHQHTMDTLSNELLRRKAAQKQLEAVLDVVKLKRKELENTKSALRGLPT
LLGSLDNDLKPLRTLIHKKPVKYTTSPTIPEAQQLPAPLYVLTRQAMGYR
DSFGDLSVSILGDAPKRPLRKDPYAVHPMRVQIDVHCNGIEQALRVKFSY
HVNLNIVSVSSVIVADGTETPSYPTKELQMLYPFDFGEESPNPGNAYLER
GTFKFDISKAHGSRPFVWANVVCGITSMLPIESHKARIVDQFQFAKWPSR
AMEISGHVRFKDVFETLKSRLKSIVSLKKQIELLLSKSLPVVPAGIGIRT
EPKSKLEDFVKLPPQDWAGDERLAREGTGGKYTEVWCMVISREALRINCM
IGIEPDYPIGPPVFRLVCDKGSEFVSEMDVLDLERCVNELSGSEKLKGHE
ELLLGAQIIALLSYLDRLYNVSFGVDDDEIGTQSKVINGRTRSKRSSMMS
GSPVK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019163THO_Thoc5