Ggra1218.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra1218.t1
Unique NameGgra1218.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length679
Homology
BLAST of Ggra1218.t1 vs. uniprot
Match: A0A2V3IKN5 (Pre-mRNA-splicing factor CWC21 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IKN5_9FLOR)

HSP 1 Score: 114 bits (284), Expect = 4.710e-25
Identity = 73/139 (52.52%), Postives = 84/139 (60.43%), Query Frame = 0
Query:  489 MYNGIGLTSTRGTGTSGHVQRNVAALRPQRQRRAXXXXXXXXXXXXXXXXXXXXXXXXHEQRRQVEVAVAELHDELEARGYDARTIAFMKARLRDDLLSRAAPSARAAAR--ALPFGSQCDERHQRVRAALGVRDDYAP 625
            MYNGIG+T+TRGTGTSGHVQRNVAALRPQ+QR +                        HE+RR VEVAVAELHDEL AR YD+ TI FMK RLR DLLSR A   +AA +    P     + R+ R+R A  V   Y P
Sbjct:    1 MYNGIGITTTRGTGTSGHVQRNVAALRPQKQRSSRPPFKQTAAYPRALPPALAA----HERRRAVEVAVAELHDELVARQYDSSTITFMKDRLRRDLLSRDATEVQAAQQHSTAPVSDLFNARNDRLRDAFKVDKHYTP 135          
BLAST of Ggra1218.t1 vs. uniprot
Match: A0A4Z2EZW8 (Serine/arginine repetitive matrix protein 2 n=1 Tax=Liparis tanakae TaxID=230148 RepID=A0A4Z2EZW8_9TELE)

HSP 1 Score: 75.1 bits (183), Expect = 1.250e-11
Identity = 54/151 (35.76%), Postives = 79/151 (52.32%), Query Frame = 0
Query:  489 MYNGIGLTSTRGTGTSGHVQRNVAALR---PQRQRRAXXXXXXXXXXXXXXXXXXXXXXXXHEQRRQVEVAVAELHDELEARGYDARTIAFMKARLRDDLLSRAAPSARAAAR-------ALPFGSQCDERHQRVRAALGVRDDYAPGAAF 629
            MYNGIGLT+ RG+GT+G+VQRN+++LR   P+ +R                          H+++RQ+EV  AEL D +E +GY A  I       R  L  +  P+A AA R       AL   +Q  +++ R+RAA G+  DY  G++F
Sbjct:    1 MYNGIGLTTPRGSGTNGYVQRNLSSLRVKRPRDERGGERDDKDRERLESQLNRQPNADILEHQRKRQLEVKCAELQDMMEEQGYSAEEIEEKVNSFRMMLQEQQEPAAAAADRPTATETHALAAANQ--QKNDRLRAAFGISSDYVDGSSF 149          
BLAST of Ggra1218.t1 vs. uniprot
Match: A0A8C6PCB1 (cwf21 domain-containing protein n=1 Tax=Nothobranchius furzeri TaxID=105023 RepID=A0A8C6PCB1_NOTFU)

HSP 1 Score: 72.8 bits (177), Expect = 4.330e-11
Identity = 49/149 (32.89%), Postives = 76/149 (51.01%), Query Frame = 0
Query:  489 MYNGIGLTSTRGTGTSGHVQRNVAALR---PQRQRRAXXXXXXXXXXXXXXXXXXXXXXXXHEQRRQVEVAVAELHDELEARGYDARTIAFMKARLRDDLLSRAAPSARAAARAL-----PFGSQCDERHQRVRAALGVRDDYAPGAAF 629
            MYNGIGLT+ RG+GT+G+VQRN+++LR   P+ +R                          H+++RQ+EV  AEL D +E +GY A  I       R  L  +  P   +A +A+        +   +++ R+RAA G+  DY  G++F
Sbjct:    1 MYNGIGLTTPRGSGTNGYVQRNLSSLRVKRPRDERGGERDEKDRERLESQLNRQPNADILEHQRKRQLEVKCAELQDMMEEQGYSAEEIEEKVNSFRMMLQEKQEPPPTSAQKAVVTETHALAAANQQKNDRLRAAFGISSDYVDGSSF 149          
BLAST of Ggra1218.t1 vs. uniprot
Match: A0A0S7L5A7 (SRRM2 n=2 Tax=Ovalentaria TaxID=1489908 RepID=A0A0S7L5A7_9TELE)

HSP 1 Score: 72.0 bits (175), Expect = 6.440e-11
Identity = 52/151 (34.44%), Postives = 77/151 (50.99%), Query Frame = 0
Query:  489 MYNGIGLTSTRGTGTSGHVQRNVAALR---PQRQRRAXXXXXXXXXXXXXXXXXXXXXXXXHEQRRQVEVAVAELHDELEARGYDARTIAFMKARLRDDLLSRAAPSARAAAR-------ALPFGSQCDERHQRVRAALGVRDDYAPGAAF 629
            MYNGIGLT+ RG+GT+G+VQRN+++LR   P+ +R                          H+++RQ+EV  AEL D +E +GY A  I       R  L  +  P   AA +       AL   +Q  +++ R+RAA G+  DY  G++F
Sbjct:    1 MYNGIGLTTPRGSGTNGYVQRNLSSLRVKRPRDERGGERDEKDRERLESQLNRQPNADILEHQRKRQLEVKCAELQDMMEEQGYSAEEIEEKVNSFRMMLQEKEEPPLAAAQKPNVTETHALAAANQ--QKNDRLRAAFGISSDYVDGSSF 149          
BLAST of Ggra1218.t1 vs. uniprot
Match: A0A8C8EN42 (cwf21 domain-containing protein n=1 Tax=Oncorhynchus tshawytscha TaxID=74940 RepID=A0A8C8EN42_ONCTS)

HSP 1 Score: 72.0 bits (175), Expect = 8.320e-11
Identity = 53/151 (35.10%), Postives = 80/151 (52.98%), Query Frame = 0
Query:  489 MYNGIGLTSTRGTGTSGHVQRN---VAALRPQRQRRAXXXXXXXXXXXXXXXXXXXXXXXXHEQRRQVEVAVAELHDELEARGYDARTIA----FMKARLRDDLLSRAAPSARAAA---RALPFGSQCDERHQRVRAALGVRDDYAPGAAF 629
            MYNGIGLT+ RG+GT+G+VQRN   V A RP+ +R                          H+++RQ+EV  AEL D +E +GY A  I       +  L++   S +AP+ R +A    AL   +Q  +++ R++AA G+  DY  G++F
Sbjct:    1 MYNGIGLTTPRGSGTNGYVQRNLSSVRAKRPRDERGGERDEKDRERLESQLNRQPNAEILEHQRKRQLEVKCAELQDMMEEQGYSAEEIEEKVNSFRMMLQEKQESPSAPTERPSATETHALAAANQ--QKNDRLKAAFGIATDYVDGSSF 149          
BLAST of Ggra1218.t1 vs. uniprot
Match: A0A8C4I3H4 (Serine/arginine repetitive matrix 2 n=1 Tax=Dicentrarchus labrax TaxID=13489 RepID=A0A8C4I3H4_DICLA)

HSP 1 Score: 71.6 bits (174), Expect = 1.110e-10
Identity = 52/151 (34.44%), Postives = 76/151 (50.33%), Query Frame = 0
Query:  489 MYNGIGLTSTRGTGTSGHVQRNVAALR---PQRQRRAXXXXXXXXXXXXXXXXXXXXXXXXHEQRRQVEVAVAELHDELEARGYDARTIAFMKARLRDDLLSRAAPSARAAAR-------ALPFGSQCDERHQRVRAALGVRDDYAPGAAF 629
            MYNGIGLT+ RG+GT+G+VQRN++ LR   P+ +R                          H+++RQ+EV  AEL D +E +GY A  I       R  L  +  P+  A  R       AL   +Q  +++ R+RAA G+  DY  G++F
Sbjct:    1 MYNGIGLTTPRGSGTNGYVQRNLSTLRVKRPRDERGGERDEKDRERLESQLNRQPNADILEHQRKRQLEVKCAELQDMMEEQGYSAEEIEEKVNSFRMMLQEKEEPTPAAIERPTVTETHALAAANQ--QKNDRLRAAFGIASDYVDGSSF 149          
BLAST of Ggra1218.t1 vs. uniprot
Match: A0A3Q0TDE6 (cwf21 domain-containing protein n=3 Tax=Heroini TaxID=318529 RepID=A0A3Q0TDE6_AMPCI)

HSP 1 Score: 71.2 bits (173), Expect = 1.240e-10
Identity = 51/151 (33.77%), Postives = 77/151 (50.99%), Query Frame = 0
Query:  489 MYNGIGLTSTRGTGTSGHVQRNVAALR---PQRQRRAXXXXXXXXXXXXXXXXXXXXXXXXHEQRRQVEVAVAELHDELEARGYDARTIAFMKARLRDDLLSRAAPSARAAAR-------ALPFGSQCDERHQRVRAALGVRDDYAPGAAF 629
            MYNGIGLT+ RG+GT+G+VQRN+++LR   P+ +R                          H+++RQ+EV  AEL D +E +GY A  I       R  L  +  P+  +  R       AL   +Q  +++ R+RAA G+  DY  G++F
Sbjct:    1 MYNGIGLTTPRGSGTNGYVQRNLSSLRVKRPRDERGGDRDEKDRERLESQLNRQPNADILEHQRKRQLEVKCAELQDMMEEQGYSAEEIEEKVNSFRMMLQEKQEPAPTSTERPTVTETHALAAANQ--QKNDRLRAAFGIASDYVDGSSF 149          
BLAST of Ggra1218.t1 vs. uniprot
Match: A0A3Q3ER67 (cwf21 domain-containing protein n=2 Tax=Percomorphaceae TaxID=1489872 RepID=A0A3Q3ER67_9LABR)

HSP 1 Score: 71.2 bits (173), Expect = 1.320e-10
Identity = 52/151 (34.44%), Postives = 78/151 (51.66%), Query Frame = 0
Query:  489 MYNGIGLTSTRGTGTSGHVQRNVAALR---PQRQRRAXXXXXXXXXXXXXXXXXXXXXXXXHEQRRQVEVAVAELHDELEARGYDARTIAFMKARLRDDLLSRAAPSARAAAR-------ALPFGSQCDERHQRVRAALGVRDDYAPGAAF 629
            MYNGIGLT+ RG+GT+G+VQRN+++LR   P+ +R                          H+++RQ+EV  AEL D +E +GY A  I       R  L  +  P+  A  R       AL   +Q  +++ R+RAA G+ +DY  G++F
Sbjct:    1 MYNGIGLTTPRGSGTNGYVQRNLSSLRVKRPRDERGGERDEKDRERLESQLNRQPNADILEHQRKRQLEVKCAELQDMMEEQGYSAEEIEEKVNSFRMMLQEKEEPTPVANERPTATETHALAAANQ--QKNDRLRAAFGISNDYVDGSSF 149          
BLAST of Ggra1218.t1 vs. uniprot
Match: A0A3P8VJR9 (cwf21 domain-containing protein n=1 Tax=Cynoglossus semilaevis TaxID=244447 RepID=A0A3P8VJR9_CYNSE)

HSP 1 Score: 71.6 bits (174), Expect = 1.530e-10
Identity = 52/151 (34.44%), Postives = 76/151 (50.33%), Query Frame = 0
Query:  489 MYNGIGLTSTRGTGTSGHVQRNVAALR---PQRQRRAXXXXXXXXXXXXXXXXXXXXXXXXHEQRRQVEVAVAELHDELEARGYDARTIAFMKARLRDDLLSRAAPSARAAAR-------ALPFGSQCDERHQRVRAALGVRDDYAPGAAF 629
            MYNGIGLT+ RG+GT+G+VQRN++ LR   P+ +R                          H+++RQ+EV  AEL D +E +GY A  I       R  L  +  P+  A  R       AL   +Q  +++ R+RAA G+  DY  G++F
Sbjct:    1 MYNGIGLTTPRGSGTNGYVQRNLSTLRVKRPRDERGGERDEKDRERLESQLNRQPNADILEHQRKRQLEVKCAELQDMMEEQGYSAEEIEEKVNSFRMMLQEKEEPAPDATERPTATETHALAAANQ--QKNDRLRAAFGISSDYVDGSSF 149          
BLAST of Ggra1218.t1 vs. uniprot
Match: A0A6Q2XYV4 (Serine/arginine repetitive matrix protein 2-like n=1 Tax=Esox lucius TaxID=8010 RepID=A0A6Q2XYV4_ESOLU)

HSP 1 Score: 73.2 bits (178), Expect = 1.560e-10
Identity = 52/149 (34.90%), Postives = 73/149 (48.99%), Query Frame = 0
Query:  489 MYNGIGLTSTRGTGTSGHVQRN---VAALRPQRQRRAXXXXXXXXXXXXXXXXXXXXXXXXHEQRRQVEVAVAELHDELEARGYDARTIAFMKARLRDDLLSRAAPSARAAARALPFGSQC-----DERHQRVRAALGVRDDYAPGAAF 629
            MYNGIGLT+ RG+GT+G+VQRN   V A RP+ +R                          H+++RQ+EV  AEL D +E +GY A  I       R  L  +  P A  A R L   +        +++ R+RAA G+  DY  G++F
Sbjct:    1 MYNGIGLTTPRGSGTNGYVQRNLSSVRAKRPRDERGGERDEKDRERLESQLNRQPNAEILEHQRKRQLEVKCAELQDMMEEQGYSAEEIEEKVNSFRMMLQEKQEPPAAPAERPLATETHALAAANQQKNDRLRAAFGIATDYVDGSSF 149          
The following BLAST results are available for this feature:
BLAST of Ggra1218.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IKN54.710e-2552.52Pre-mRNA-splicing factor CWC21 n=1 Tax=Gracilariop... [more]
A0A4Z2EZW81.250e-1135.76Serine/arginine repetitive matrix protein 2 n=1 Ta... [more]
A0A8C6PCB14.330e-1132.89cwf21 domain-containing protein n=1 Tax=Nothobranc... [more]
A0A0S7L5A76.440e-1134.44SRRM2 n=2 Tax=Ovalentaria TaxID=1489908 RepID=A0A0... [more]
A0A8C8EN428.320e-1135.10cwf21 domain-containing protein n=1 Tax=Oncorhynch... [more]
A0A8C4I3H41.110e-1034.44Serine/arginine repetitive matrix 2 n=1 Tax=Dicent... [more]
A0A3Q0TDE61.240e-1033.77cwf21 domain-containing protein n=3 Tax=Heroini Ta... [more]
A0A3Q3ER671.320e-1034.44cwf21 domain-containing protein n=2 Tax=Percomorph... [more]
A0A3P8VJR91.530e-1034.44cwf21 domain-containing protein n=1 Tax=Cynoglossu... [more]
A0A6Q2XYV41.560e-1034.90Serine/arginine repetitive matrix protein 2-like n... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002110Ankyrin repeatPRINTSPR01415ANKYRINcoord: 235..249
score: 43.34
coord: 187..202
score: 46.53
IPR002110Ankyrin repeatSMARTSM00248ANK_2acoord: 120..149
e-value: 5.1E-5
score: 32.7
coord: 318..347
e-value: 0.046
score: 22.9
coord: 351..380
e-value: 5.7E-4
score: 29.2
coord: 384..413
e-value: 0.14
score: 21.3
coord: 87..116
e-value: 7.7E-5
score: 32.1
coord: 153..182
e-value: 2.0E-4
score: 30.7
coord: 186..215
e-value: 2.1E-4
score: 30.6
coord: 285..314
e-value: 7.1
score: 15.6
coord: 54..83
e-value: 0.015
score: 24.5
coord: 219..248
e-value: 0.33
score: 20.0
coord: 252..281
e-value: 3.6E-4
score: 29.9
IPR002110Ankyrin repeatPFAMPF13637Ank_4coord: 232..273
e-value: 5.4E-8
score: 33.2
coord: 288..333
e-value: 2.8E-7
score: 30.9
IPR002110Ankyrin repeatPFAMPF12796Ank_2coord: 338..412
e-value: 3.3E-12
score: 46.8
coord: 125..217
e-value: 8.9E-20
score: 71.1
coord: 52..116
e-value: 1.3E-9
score: 38.5
IPR002110Ankyrin repeatPROSITEPS50088ANK_REPEATcoord: 252..284
score: 12.822969
IPR002110Ankyrin repeatPROSITEPS50088ANK_REPEATcoord: 285..317
score: 10.71288
IPR002110Ankyrin repeatPROSITEPS50088ANK_REPEATcoord: 186..218
score: 12.636
IPR002110Ankyrin repeatPROSITEPS50088ANK_REPEATcoord: 120..152
score: 12.87639
IPR002110Ankyrin repeatPROSITEPS50088ANK_REPEATcoord: 318..350
score: 12.55587
IPR002110Ankyrin repeatPROSITEPS50088ANK_REPEATcoord: 351..383
score: 13.67769
IPR002110Ankyrin repeatPROSITEPS50088ANK_REPEATcoord: 87..119
score: 13.11678
IPR002110Ankyrin repeatPROSITEPS50088ANK_REPEATcoord: 54..86
score: 10.20539
IPR002110Ankyrin repeatPROSITEPS50088ANK_REPEATcoord: 153..185
score: 13.65098
IPR002110Ankyrin repeatPROSITEPS50088ANK_REPEATcoord: 384..416
score: 11.14024
IPR002110Ankyrin repeatPROSITEPS50088ANK_REPEATcoord: 219..251
score: 11.75457
IPR013170mRNA splicing factor Cwf21 domainSMARTSM01115cwf21_2coord: 545..590
e-value: 1.0E-5
score: 35.0
IPR013170mRNA splicing factor Cwf21 domainPFAMPF08312cwf21coord: 546..586
e-value: 6.8E-6
score: 26.1
IPR036770Ankyrin repeat-containing domain superfamilyGENE3D1.25.40.20coord: 3..157
e-value: 1.8E-37
score: 130.7
IPR036770Ankyrin repeat-containing domain superfamilyGENE3D1.25.40.20coord: 352..441
e-value: 1.4E-21
score: 78.7
coord: 287..351
e-value: 4.8E-18
score: 67.2
IPR036770Ankyrin repeat-containing domain superfamilyGENE3D1.25.40.20coord: 158..204
e-value: 1.3E-18
score: 68.9
IPR036770Ankyrin repeat-containing domain superfamilyGENE3D1.25.40.20coord: 205..286
e-value: 1.2E-22
score: 82.6
IPR036770Ankyrin repeat-containing domain superfamilySUPERFAMILY48403Ankyrin repeatcoord: 58..423
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 494..510
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 640..678
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 428..454
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 428..549
NoneNo IPR availablePANTHERPTHR24121NO MECHANORECEPTOR POTENTIAL C, ISOFORM D-RELATEDcoord: 222..419
coord: 20..187
coord: 178..377
coord: 58..240
NoneNo IPR availablePROSITEPS50297ANK_REP_REGIONcoord: 120..150
score: 12.089582
NoneNo IPR availablePROSITEPS50297ANK_REP_REGIONcoord: 318..350
score: 11.187517
NoneNo IPR availablePROSITEPS50297ANK_REP_REGIONcoord: 87..117
score: 12.328365
NoneNo IPR availablePROSITEPS50297ANK_REP_REGIONcoord: 186..218
score: 11.267111
NoneNo IPR availablePROSITEPS50297ANK_REP_REGIONcoord: 219..250
score: 10.869141
NoneNo IPR availablePROSITEPS50297ANK_REP_REGIONcoord: 252..281
score: 11.479361
NoneNo IPR availablePROSITEPS50297ANK_REP_REGIONcoord: 351..382
score: 12.301834
NoneNo IPR availablePROSITEPS50297ANK_REP_REGIONcoord: 384..411
score: 10.842607
NoneNo IPR availablePROSITEPS50297ANK_REP_REGIONcoord: 153..185
score: 12.275303
NoneNo IPR availablePROSITEPS50297ANK_REP_REGIONcoord: 54..82
score: 9.011944
NoneNo IPR availablePROSITEPS50297ANK_REP_REGIONcoord: 285..316
score: 9.834415

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000926_piloncontigtig00000926_pilon:132415..138739 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1218.t1Ggra1218.t1Gracilaria gracilis GNS1m malemRNAtig00000926_pilon 132415..138739 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra1218.t1 ID=Ggra1218.t1|Name=Ggra1218.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=679bp
MGDLNTLRTAARRGDLSGILSSLGGEVNRKDENGLSALHLIAAFGHVAVS
KDNSGQAALHITASCGREKVMVALLEHDANVNCRTNNGMTALHIAAAVGN
TQTVAELLSNGADANSRLKDGWTALHIAAAVGNTQTVAELLSNGADANSR
LKDGWTALHAAAAKGHEAVVEELLASGADAQSQNNEGYTALHIAAWCGHE
EVVTALLLRDTDVNTKNDEGGTAVLFAAGGGHAQVVAALLSAGADVNIAD
LAGETALHNAAFNGHTKVVQALLGSSANVNAETDLRGSAIHLAASAGHAQ
VVATLLSAGAKVQSKDLNGWTALHNAAVHGHAQVGAELLAGGADPNARNN
DRDTALHLAAQQGNTQVVAELLARGADLQARNSNGDTALHIAARQRKTEL
ANMLWSAGADVLSFNIFGQSSLSLLPSTSQLAQQMRSSPRRPPSLQQQEP
AELRQKQHAQFPPPRRRRPRLAFSSPLPTPRSPADAAAMYNGIGLTSTRG
TGTSGHVQRNVAALRPQRQRRARPPPPPAKRAAAAPTSPRRSALQQHEQR
RQVEVAVAELHDELEARGYDARTIAFMKARLRDDLLSRAAPSARAAARAL
PFGSQCDERHQRVRAALGVRDDYAPGAAFRRRRAAGYGVDYRERDGGDGR
AVAASTKRSVPYSPPADRAPKRRRGSDW*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002110Ankyrin_rpt
IPR013170mRNA_splic_Cwf21_dom
IPR036770Ankyrin_rpt-contain_sf