Ggra1184.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra1184.t1
Unique NameGgra1184.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length565
Homology
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BLAST of Ggra1184.t1 vs. uniprot
Match: A0A2V3J5Q5 (Krueppel-like factor 14 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J5Q5_9FLOR)

HSP 1 Score: 121 bits (304), Expect = 2.340e-25
Identity = 76/195 (38.97%), Postives = 111/195 (56.92%), Query Frame = 0 
Query:  363 RKRRRTRVEDMNPADVHVCSYSGCGRRFARRYNLTVHERAHRNEHPFRCDVXXXXXXXXXXXXXXXXXXXHNKGRRSGGRKQRRKSALQPPPHLKKIDEQQYPGACSPSAVNQG-------KGFRLVEDVRALVSTVCLDQTHVALLGQKKPKIKEEINVKAHLEDRWHQFAQRQQQLEVMWNSPIVISRDIFLR 550
            RKR RTRVEDM+PADVHVC++ GCGR+FA++YNLTVHER HR E P++C+V                   H K R+ G R+ +RK+         +       G  SP+ VNQ        + F L++ ++ALV+T+ ++   V L  + +  I +++N+KA LE+RW  F  R+Q+L    N P  I R++ LR
Sbjct:  516 RKRTRTRVEDMDPADVHVCTFHGCGRKFAKKYNLTVHERGHRGELPYKCEVLNCGKPFMWLSSFSRHLRVHEKKRKVGSRRSQRKAVAD-----SRSGSDGDTG--SPTNVNQSIANGPSEEAFELLK-MQALVNTIGINDAVVGLTHRVQVSIGKDLNIKAQLEERWKSFGYRKQKLTNSRNLPFDI-RNVRLR 701
The following BLAST results are available for this feature:
BLAST of Ggra1184.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3J5Q52.340e-2538.97Krueppel-like factor 14 n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013087Zinc finger C2H2-typeSMARTSM00355c2h2final6coord: 409..433
e-value: 1.5E-4
score: 31.2
coord: 379..403
e-value: 0.0018
score: 27.6
IPR013087Zinc finger C2H2-typePFAMPF00096zf-C2H2coord: 379..403
e-value: 7.5E-4
score: 19.8
coord: 409..433
e-value: 0.0034
score: 17.7
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 381..403
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 411..433
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 379..408
score: 13.442825
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 409..438
score: 12.632284
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 404..449
e-value: 4.6E-10
score: 41.0
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 361..403
e-value: 6.6E-8
score: 34.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 277..373
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 248..267
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 431..452
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 358..373
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 292..310
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 431..467
NoneNo IPR availablePANTHERPTHR19818ZINC FINGER PROTEIN ZIC AND GLIcoord: 379..434
coord: 293..434
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 390..436

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000237_piloncontigtig00000237_pilon:105611..107305 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1184.t1Ggra1184.t1Gracilaria gracilis GNS1m malemRNAtig00000237_pilon 105611..107305 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra1184.t1 ID=Ggra1184.t1|Name=Ggra1184.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=565bp
MFGSFECHDANIATTAGFPGVYPCAAVAFHSPPTEQAKTRGTYRKINRGL
VEAIVASECDNGITIRGASDAKDDTINGNGRENVPGSSTAGLPSIAERFE
EVTEVRKVCAENVGNAGTCGAGDEGVSDEPFDPSGLPDEDYLDLMFMPLP
KEDRSRLSERKPLTSLFCELLPEVPVNETEGLEHQECGETMGNDESVPMI
ISDDDYLDQMFAPLPPEDKVRLSSNQTKESLFKELLGQDYAAEGLRVYEE
RRKEDVPSKPPTGDADTVEQCGTQMVQNGAQRAHDVRVWTQAPNSMARST
FPSQPQVEVPADQNALDESAPELNAPMQRSPDDSPKPKKRAKRKRSSKKV
AKPSQEGESQQQRKRRRTRVEDMNPADVHVCSYSGCGRRFARRYNLTVHE
RAHRNEHPFRCDVPGCGKPFMWQSSLVRHLRVHNKGRRSGGRKQRRKSAL
QPPPHLKKIDEQQYPGACSPSAVNQGKGFRLVEDVRALVSTVCLDQTHVA
LLGQKKPKIKEEINVKAHLEDRWHQFAQRQQQLEVMWNSPIVISRDIFLR
LYAAISPGTTEPHS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
IPR036236Znf_C2H2_sf