Ggra11015.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra11015.t1
Unique NameGgra11015.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length795
Homology
BLAST of Ggra11015.t1 vs. uniprot
Match: A0A2V3J0G4 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J0G4_9FLOR)

HSP 1 Score: 701 bits (1809), Expect = 6.390e-244
Identity = 357/586 (60.92%), Postives = 456/586 (77.82%), Query Frame = 0
Query:  208 MDTGIQVPVWNVLKYVVLTLLLAPLAETAMSQVTAWRHAYLVKRGKPIQLKASQWGNIALHQEVETNHVSGRFWQVFSILLALAIALPFEYSSGAKSQIVWS-QQESRSSAVGTNGTDEIILLALDNPAGEPECVNPNTLASIGEFVFLKPREDKPPLLDGVVTLEDINNLLSVKYQGQSWQRRSLTSRRGETGLVLYTGGRSGQQAIIGDLERGGLLVADFESGSLCKGLLDDTFSCYDLTDKFTVSQLVHSLAAVRGSSMFLRTRFENAAKLFRFREAVVTISIGNPTVEENLYDQRLNETGFEWLVRHRDEGGSPSLSISTLPLDKRLQSVSCQSVGSSRIRPLHLRVGEEFEGFKFEVNVSAKGDLNLVKTGTKLQTILLTEVGNEWKCAVDWISGVCESATNGSLYFMSKAERTFEFTTEFELKVTQNVESNADLAVLLAQIGTEIRRNGFIAFWDLQNLLSFSPTEVEGARIISTRMDTSVLTSSGIRVTGTIEAWALGLYAGFWLLFISILVVFRLRSWPGIDIERIYRWVVWQRETVFNASVTPRTAPTVRIESTLEDGAVQMRASYFVKDENPMELQ 792
            MDTGI V +WNVLKY  LTLLLAP+AE+AMS++TAWR+AYLV  GKPI+LK+S  GNI+LHQEVET HVS    Q+FSILLALAIALPFEYSSGA+S + WS QQ S SSA+ T+  +E+ILL+L NPA   ECVNP+ LA +G+FVF++  E  PP +DG+VTLED+  +L+VKYQG+ W+R +L SR G+TG+  Y G R+ QQAIIG+ ER GLLVADFE+GSLC GLL+DTFSCYD+  +FTVSQLV+SL AVRG+S+FLRT FE  AKLFRF+  +VT SIG+P+VEENL++QRLNE+GFEWL R  +E G   LSISTL LD +++S +CQ++GS +IRPL  +VGE  EG  FEVNVSAKGDL LVKTG  L+  LLT+VG +WKCAVD +SGVC S TNG+ YF+SKA+  +E+TTEFE+++T+NVES+ADLA+LLA + ++IR NGF+A WDLQ+LLSF     EGAR I+  MDTSV  SSG+RVTGTI+ WA+ LY    L F+S++V F+ ++   I+IER+YR VV Q+E+ + +   P TAPT+ IE+  EDG     AS+ + + NP+ LQ
Sbjct:    1 MDTGINVQLWNVLKYFGLTLLLAPIAESAMSRITAWRNAYLVNHGKPIRLKSSIMGNISLHQEVETLHVSSTLLQLFSILLALAIALPFEYSSGAESHLTWSRQQRSHSSAIATHDPNELILLSLSNPAERMECVNPDRLADVGQFVFMQSTEHTPPFMDGIVTLEDVKQILAVKYQGELWRRMTLHSRNGDTGIHFYVGSRTRQQAIIGNPERKGLLVADFEAGSLCIGLLNDTFSCYDMAGQFTVSQLVYSLTAVRGASLFLRTEFETEAKLFRFKAGLVTNSIGDPSVEENLFEQRLNESGFEWLERMYNEDGRAVLSISTLRLDAQMRSTNCQTIGSVQIRPLRFQVGEWLEGENFEVNVSAKGDLTLVKTGNLLKASLLTQVGEDWKCAVDRLSGVCASETNGTFYFLSKAQSVYEYTTEFEMQLTRNVESHADLAILLAHVESDIRTNGFVAPWDLQHLLSFPHNLSEGARTITRGMDTSVPISSGMRVTGTIQLWAIVLYGFLLLFFVSVVVFFKFKTLASINIERVYRRVVLQKESGYQSLKIPSTAPTIGIEALQEDGEGGWTASHCMMNGNPVGLQ 586          
BLAST of Ggra11015.t1 vs. uniprot
Match: A0A2V3ID58 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ID58_9FLOR)

HSP 1 Score: 300 bits (767), Expect = 8.630e-93
Identity = 150/231 (64.94%), Postives = 184/231 (79.65%), Query Frame = 0
Query:  391 SLTSRRGETGLVLYTGGRSGQQAIIGDLERGGLLVADFESGSLCKGLLDDTFSCYDLTDKFTVSQLVHSLAAVRGSSMFLRTRFENAAKLFRFREAVVTISIGNPTVEENLYDQRLNETGFEWLVRHRDEGGSPSLSISTLPLDKRLQSVSCQSVGSSRIRPLHLRVGEEFEGFKFEVNVSAKGDLNLVKTGTKLQTILLTEVGNEWKCAVDWISGVCESATNGSLYFMSK 621
            +L SR G+TG+ LY G R+GQQA+IG+ ER GLLVADFE+GSLCKGLL+DTFSCYD+  + TVSQLV+SL AVRG S+FLRT+FE  AKLFRF+  +VT S+G P+VEENL+++R NE+GFEWL R  +E G   LSISTL LD +++S +CQS+GS +IRPL  +VGE  EG KFEV VS KGDLNLVKTG  LQ  LL +VG EWKCAVD ISGVC S TNG+ YF+++
Sbjct:    2 TLHSRNGDTGIHLYVGVRTGQQAVIGNPERRGLLVADFEAGSLCKGLLNDTFSCYDMAGQLTVSQLVYSLTAVRGDSLFLRTKFETEAKLFRFKAGLVTNSVGGPSVEENLFERRQNESGFEWLERMYNEDGRAILSISTLRLDAQMRSSNCQSIGSVQIRPLRFQVGEWLEGEKFEVIVSPKGDLNLVKTGILLQATLLMQVGEEWKCAVDRISGVCVSKTNGTFYFLAR 232          
BLAST of Ggra11015.t1 vs. uniprot
Match: A0A2V3IQR5 (Collagen alpha-5(VI) chain n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IQR5_9FLOR)

HSP 1 Score: 74.7 bits (182), Expect = 3.420e-11
Identity = 38/82 (46.34%), Postives = 56/82 (68.29%), Query Frame = 0
Query:   98 AKVRSALRVARDRACAPALCFALDAGSRLTALEFRQQRDFTKLVSAIVALDERAAFAALQYTARVRRVSALTANATAFLQRV 179
            A+V+ AL++A    C P +CFA+D    +   EF+ ++DFT LV+A+VA DE+A FAA+QY  R + +S LT +A AFL+ V
Sbjct:   43 AEVQLALQIAEKTRCDPNICFAVDGSGSMDVTEFQLEKDFTNLVAAVVAYDEQARFAAVQYGLRPKFISRLTEDADAFLEAV 124          
The following BLAST results are available for this feature:
BLAST of Ggra11015.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3J0G46.390e-24460.92Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3ID588.630e-9364.94Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3IQR53.420e-1146.34Collagen alpha-5(VI) chain n=1 Tax=Gracilariopsis ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 68..92
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 707..729
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 19..706
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..13
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 14..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..18
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 730..794
NoneNo IPR availableTMHMMTMhelixcoord: 707..729

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000224_piloncontigtig00000224_pilon:79495..82846 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra11015.t1Ggra11015.t1Gracilaria gracilis GNS1m malemRNAtig00000224_pilon 79495..82846 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra11015.t1 ID=Ggra11015.t1|Name=Ggra11015.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=795bp
MKLCVALSFSLALALASGARGEQQQRYAAEIVAAYLDDAPATAAAPALSA
FASSSTASASAQSLSAGAAGKPSPAASGDGGGGGRTQLSLQPSAQTRAKV
RSALRVARDRACAPALCFALDAGSRLTALEFRQQRDFTKLVSAIVALDER
AAFAALQYTARVRRVSALTANATAFLQRVDGASRRCACAGAARGALEIRL
FISLQSTMDTGIQVPVWNVLKYVVLTLLLAPLAETAMSQVTAWRHAYLVK
RGKPIQLKASQWGNIALHQEVETNHVSGRFWQVFSILLALAIALPFEYSS
GAKSQIVWSQQESRSSAVGTNGTDEIILLALDNPAGEPECVNPNTLASIG
EFVFLKPREDKPPLLDGVVTLEDINNLLSVKYQGQSWQRRSLTSRRGETG
LVLYTGGRSGQQAIIGDLERGGLLVADFESGSLCKGLLDDTFSCYDLTDK
FTVSQLVHSLAAVRGSSMFLRTRFENAAKLFRFREAVVTISIGNPTVEEN
LYDQRLNETGFEWLVRHRDEGGSPSLSISTLPLDKRLQSVSCQSVGSSRI
RPLHLRVGEEFEGFKFEVNVSAKGDLNLVKTGTKLQTILLTEVGNEWKCA
VDWISGVCESATNGSLYFMSKAERTFEFTTEFELKVTQNVESNADLAVLL
AQIGTEIRRNGFIAFWDLQNLLSFSPTEVEGARIISTRMDTSVLTSSGIR
VTGTIEAWALGLYAGFWLLFISILVVFRLRSWPGIDIERIYRWVVWQRET
VFNASVTPRTAPTVRIESTLEDGAVQMRASYFVKDENPMELQQA*
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