Ggra1095.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra1095.t1
Unique NameGgra1095.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length186
Homology
BLAST of Ggra1095.t1 vs. uniprot
Match: A0A2V3ID60 (Cartilage matrix protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ID60_9FLOR)

HSP 1 Score: 123 bits (309), Expect = 7.150e-32
Identity = 73/176 (41.48%), Postives = 101/176 (57.39%), Query Frame = 0
Query:    1 MTESAGCNANVCFALDGSGSISNQGFQNQKDFVIDVSAIIN--PNPCKLSALVYGSNVTLISPLTDDIDRFLVAVNSARFDSSSSTSIDDGILQCAAQLEVGDERRAVIVLLGDGRFNSGSDPIRLAGDFKNDFGDGAALHTVGADFFDIDNLRGIASAGGGRTFEVESFEDVLTL 174
            M E  GCN NVCFALDGS S++   ++ QKDFV  +SA+++        SA+ YG  V+ ISPLT  ID F + V+++   +   +SI  GI  C+ QL    +    I++ GDGR  S +D + +A  FK DF     L TVG  F +   L+ IA AGGGR FE++ + D L L
Sbjct:   38 MVERNGCNLNVCFALDGSASVTPLDYEMQKDFVQLMSAVLDFEVENSSFSAVQYGDQVSPISPLTQSIDDFNLKVHASNISAFQGSSIGKGITYCSNQLLELADNPVKIIVFGDGRETSKTDAVSIAASFK-DFHPNGRLSTVGVGFPNTVLLKTIAEAGGGRLFEIDEYIDALDL 212          
BLAST of Ggra1095.t1 vs. uniprot
Match: A0A2V3IQR5 (Collagen alpha-5(VI) chain n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IQR5_9FLOR)

HSP 1 Score: 84.7 bits (208), Expect = 9.760e-17
Identity = 62/187 (33.16%), Postives = 90/187 (48.13%), Query Frame = 0
Query:    1 MTESAGCNANVCFALDGSGSISNQGFQNQKDFVIDVSAIIN-PNPCKLSALVYGSNVTLISPLTDDIDRFLVAVNSARFDSSSSTSIDDGILQCAAQLEVGDERRAVIVLLGDGRFNSGS-----DPIRLAGDFKNDFGDGAALHTVGADFFDIDNLRGIASAGGGRTFEVESFEDVLTLTELIVGE 181
            + E   C+ N+CFA+DGSGS+    FQ +KDF   V+A++      + +A+ YG     IS LT+D D FL AV+     ++  T I  G+  C  Q          IVLLGDGR N  S     DP+ +A  F  +  +   +  VG  F   D +    + G    F V  + +V T+   +VGE
Sbjct:   51 IAEKTRCDPNICFAVDGSGSMDVTEFQLEKDFTNLVAAVVAYDEQARFAAVQYGLRPKFISRLTEDADAFLEAVHYTESLNAPRTFIAPGLAGCIRQFYYLKGEPKHIVLLGDGRSNFDSKLPPLDPVSIAQAFLANPNN--TISAVGVGFDADDTMLTNIAGGEENVFNVGQWLEVTTVLAELVGE 235          
BLAST of Ggra1095.t1 vs. uniprot
Match: A0A2V3ISA4 (VWFA domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ISA4_9FLOR)

HSP 1 Score: 72.0 bits (175), Expect = 5.120e-12
Identity = 63/194 (32.47%), Postives = 89/194 (45.88%), Query Frame = 0
Query:    1 MTESAGCNANVCFALDGSGSISNQGFQNQKDFVIDVSAIIN-PNPCKLSALVYGSNVTLISPLTDDIDRFLVAVNSARFDSSSSTSIDDGILQCAAQLEVGDERRAVIVLLGDGRFNSGS-----DPIRLAGDFKNDFGDGAALHTVGADFFDIDNLRGIASAGGGRTFEVE---SFEDVLT-LTELIVGENSI 184
            + E  GC  N+CFA+DGS SI++  FQ Q DFV  ++ +++       SA+ YG     +S  T D   FL+ V   R   S  T I  GI  C  Q      +   I+LLGDGR    S     DP  +A  F  +  +  ++  VG  F   + L  I +    R F V    S  DVL  L E + G +++
Sbjct:   48 IVEETGCEPNLCFAIDGSSSITDDEFQLQLDFVALITGLVSLDEQSGYSAIQYGLRPKFMSRFTQDAAAFLLKVEGTRQLRSVRTFIAPGIGGCMRQFRRVRGQANKIILLGDGRSTFDSRDPPLDPPSIAAQFLAEPNN--SICAVGVSFDTTELLEEI-TGDPDRVFSVADWMSVVDVLADLVEQVCGADAV 238          
BLAST of Ggra1095.t1 vs. uniprot
Match: R7Q3A9 (VWFA domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q3A9_CHOCR)

HSP 1 Score: 68.9 bits (167), Expect = 7.460e-11
Identity = 45/113 (39.82%), Postives = 63/113 (55.75%), Query Frame = 0
Query:    7 CNANVCFALDGSGSISNQGFQNQKDFVIDVSAIINPNPCKLSALVYGSNVTLISPLTDDIDRFLVAVNSARFDSSSSTSIDDGILQCAAQLEV---GDERRAVIVLLGDGRFN 116
            CN  +CFALDGSGSIS   F+ Q+D V  ++++        SA+ YG + T IS  T +  +F  AV+ + F  +  T I  G+  C + L+    G  RR  I+LLGDGR N
Sbjct:   65 CNMRLCFALDGSGSISPVQFKVQQDLVKLLASVAREGGATFSAVQYGLSNTAISTPTGNAPKFRRAVDDSIFQRAPRTFIGSGLGFCISNLKTEPRGRGRR--ILLLGDGRSN 175          
BLAST of Ggra1095.t1 vs. uniprot
Match: R7Q5C2 (VWFA domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q5C2_CHOCR)

HSP 1 Score: 61.2 bits (147), Expect = 5.390e-8
Identity = 39/111 (35.14%), Postives = 60/111 (54.05%), Query Frame = 0
Query:    7 CNANVCFALDGSGSISNQGFQNQKDFVIDVSAIINPNPCKLSALVYGSNVTLISPLTDDIDRFLVAVNSARFDSSSSTSIDDGILQCAAQLEVGDERRAV-IVLLGDGRFN 116
            C+ ++CFALDGSGSIS + +Q QKD V  ++ +  P     SA+ YG     IS  T D   F+  V+++    +  T +  G+  C +Q+    +     +V+LGDGR N
Sbjct:   78 CDISLCFALDGSGSISAEEYQVQKDLVKLIAILAAPANATFSAVQYGLANEFISVSTSDPFAFMKYVDNSVLLRAPRTFLTAGLGFCISQVNENPKAGGKKVVVLGDGRDN 188          
BLAST of Ggra1095.t1 vs. uniprot
Match: A0A6B0HK16 (VWA domain-containing protein n=1 Tax=Natrialba sp. INN-245 TaxID=2690967 RepID=A0A6B0HK16_9EURY)

HSP 1 Score: 61.2 bits (147), Expect = 1.210e-7
Identity = 50/164 (30.49%), Postives = 79/164 (48.17%), Query Frame = 0
Query:   11 VCFALDGSGSISNQGFQNQKDFVIDVSAIINPNPCKLSALVYGSNVTLISPLTDDIDRFLVAVNSARFDSSSSTSIDDGILQCAAQLEVG--DERRAVIVLLGDGRFNSGSDPIRLAGDFKNDFGDGAALHTVG-ADFFDIDNLRGIASAGGGRTFEVESFEDV 171
            V F +D SGS+S    Q  ++        ++    +   + Y S+ ++   LT D D    ++ +    +   T  + G+ +   +LE    + R +VI+LL DG+ NSGS P R+A D  +    G  + TVG     D D L+ IAS  GG  + VES ED+
Sbjct:  580 VVFVVDESGSMSGSPIQYAREAAKRFVGALDDGE-QAGLVGYASSASIDRSLTTDHDDLNASIET--LSAGGGTHTEAGLREGLDELERNSWENRSSVIILLSDGKSNSGSYPRRVAEDAADR---GVEISTVGLGSSIDEDELQDIASITGGDYYHVESSEDL 737          
BLAST of Ggra1095.t1 vs. uniprot
Match: A0A2I9DA34 (Mg-chelatase subunit ChlD n=2 Tax=Deinococcus TaxID=1298 RepID=A0A2I9DA34_9DEIO)

HSP 1 Score: 55.5 bits (132), Expect = 7.780e-6
Identity = 50/150 (33.33%), Postives = 67/150 (44.67%), Query Frame = 0
Query:   42 PNPCKLSALVYGSNVTLISPLTDDIDRFLVAVNSARFDSSSSTSIDDGILQCAAQLEVG----------DERRAVIVLLGDGRFNSGSDPIRLAGDFKNDFGDGA---ALHTVGADF-----------FDIDNLRGIASAGGGRTFEVES 167
            P+  ++  + +  +  L +P T   DR   A++S     +  T+I DG L+ A Q   G          D   A IVLL DGR N+GSDP+ +A   K   G       L TVG D            FD D L+GIA+A GG   E  S
Sbjct:  123 PSGARVGLVSFSGDAVLHTPPTSRHDRVFAAIDSLTV--APRTAIGDG-LRTALQALPGRDAKAAANAQDRPPAAIVLLSDGRNNTGSDPLEVAAQAKK-LGVKVYTVGLGTVGGDLRSNRWNSFQGGFDADTLKGIATATGGHYSEARS 268          
The following BLAST results are available for this feature:
BLAST of Ggra1095.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A2V3ID607.150e-3241.48Cartilage matrix protein n=1 Tax=Gracilariopsis ch... [more]
A0A2V3IQR59.760e-1733.16Collagen alpha-5(VI) chain n=1 Tax=Gracilariopsis ... [more]
A0A2V3ISA45.120e-1232.47VWFA domain-containing protein n=1 Tax=Gracilariop... [more]
R7Q3A97.460e-1139.82VWFA domain-containing protein n=1 Tax=Chondrus cr... [more]
R7Q5C25.390e-835.14VWFA domain-containing protein n=1 Tax=Chondrus cr... [more]
A0A6B0HK161.210e-730.49VWA domain-containing protein n=1 Tax=Natrialba sp... [more]
A0A2I9DA347.780e-633.33Mg-chelatase subunit ChlD n=2 Tax=Deinococcus TaxI... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002035von Willebrand factor, type ASMARTSM00327VWA_4coord: 8..183
e-value: 6.4E-19
score: 78.9
IPR002035von Willebrand factor, type APFAMPF00092VWAcoord: 10..174
e-value: 3.0E-21
score: 76.5
IPR002035von Willebrand factor, type APROSITEPS50234VWFAcoord: 10..178
score: 15.993888
IPR036465von Willebrand factor A-like domain superfamilyGENE3D3.40.50.410von Willebrand factor, type A domaincoord: 1..182
e-value: 6.1E-26
score: 93.3
IPR036465von Willebrand factor A-like domain superfamilySUPERFAMILY53300vWA-likecoord: 6..179
NoneNo IPR availableCDDcd01450vWFA_subfamily_ECMcoord: 9..159
e-value: 8.6132E-13
score: 61.1534

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000185_piloncontigtig00000185_pilon:121929..122486 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1095.t1Ggra1095.t1Gracilaria gracilis GNS1m malemRNAtig00000185_pilon 121929..122486 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra1095.t1 ID=Ggra1095.t1|Name=Ggra1095.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=186bp
MTESAGCNANVCFALDGSGSISNQGFQNQKDFVIDVSAIINPNPCKLSAL
VYGSNVTLISPLTDDIDRFLVAVNSARFDSSSSTSIDDGILQCAAQLEVG
DERRAVIVLLGDGRFNSGSDPIRLAGDFKNDFGDGAALHTVGADFFDIDN
LRGIASAGGGRTFEVESFEDVLTLTELIVGENSIA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002035VWF_A
IPR036465vWFA_dom_sf