Ggra10896.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra10896.t1
Unique NameGgra10896.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length355
Homology
BLAST of Ggra10896.t1 vs. uniprot
Match: A0A2V3ILV1 (ATP-dependent helicase SGS1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ILV1_9FLOR)

HSP 1 Score: 142 bits (358), Expect = 1.230e-33
Identity = 99/285 (34.74%), Postives = 137/285 (48.07%), Query Frame = 0
Query:   14 RLSLTATLPPSERSSIIALHGKRLALVFPMPT----------------------------KTVSVLNQEVTD-------------VEYISD---------------VPRSVYDSALASYGQSRSS-------NMRTNVQVIHYHAGMSQSRRTDVHNQWMGCFSDSD-SNKERKSFSIIVMVCTCASGAELDVPNVRLVIHVGGSGSLVDYTQEAGRAGRDGQIGRCLVVCSKAFADNHERLLDLEERDTKTAGSFRKLEDWVQMRQWLENNVLFRKNWLYGAMD 234
            R+ LTATLPP +R +++  HG R A++F  PT                             T+  L Q +T              +EY ++               +    Y+   ASY    S        N    + VI YHAGMS++ R   H QW    S S+ +N       I +MVCT A GA +D PNVR+V+H+GGS SLVDY QEAGRAGRDG + RC+V  SK  AD+    L+ E  ++ T  ++RKL  W++ R W +++   RK+ LY AMD
Sbjct:  911 RVLLTATLPPRDRMNLLLQHGIRSAVIFKAPTVRCNLRFEVRSLRENISETSRDRSGRFRSTIRDLLQALTTEMKLEMDGVCTNILEYGNESKYSFRVLVYAMQRHIVEKAYEVLYASYVALPSGSTCNGELNYEKKISVIAYHAGMSENARMAAHKQWTSFSSTSNLTNDCMPVIDIGIMVCTSAFGAGVDAPNVRIVMHLGGSSSLVDYAQEAGRAGRDGLLARCVVFFSKRDADHLTSTLEKEATESFTEDAYRKLFGWLEARNWFQDSQSCRKHSLYAAMD 1195          
BLAST of Ggra10896.t1 vs. uniprot
Match: A0A2V3IET8 (Bloom syndrome protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IET8_9FLOR)

HSP 1 Score: 138 bits (347), Expect = 2.830e-33
Identity = 73/157 (46.50%), Postives = 98/157 (62.42%), Query Frame = 0
Query:   83 NMRTNVQVIHYHAGMSQSRRTDVHNQWMGCFSDSD-SNKERKSFSIIVMVCTCASGAELDVPNVRLVIHVGGSGSLVDYTQEAGRAGRDGQIGRCLVVCSKAFADNHERLLDLEERDTKTAGSFRKLEDWVQMRQWLENNVLFRKNWLYGAMDEAQP 238
            N    + VI YHAGMS++ R   H QW    S S+ +N       I +MVCT A GA +D PNVR+V+H+GGS SLVDY QEAGRAGRDG + RC+V+ SK  AD+    L+ E  ++ T  ++RKL  W++ R W +++   RK+ LY AMD   P
Sbjct:  260 NYEKKISVIAYHAGMSENARMAAHKQWTSFSSTSNLTNDCMPVIDIGIMVCTSAFGAGVDAPNVRIVMHLGGSSSLVDYAQEAGRAGRDGLLARCVVLFSKRDADHLTSTLEKEATESFTEDAYRKLFGWLEARNWFQDSQSCRKHSLYAAMDGEGP 416          
BLAST of Ggra10896.t1 vs. uniprot
Match: A0A2V3ILS9 (Putative ATP-dependent DNA helicase Q1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ILS9_9FLOR)

HSP 1 Score: 138 bits (347), Expect = 4.960e-33
Identity = 73/157 (46.50%), Postives = 98/157 (62.42%), Query Frame = 0
Query:   83 NMRTNVQVIHYHAGMSQSRRTDVHNQWMGCFSDSD-SNKERKSFSIIVMVCTCASGAELDVPNVRLVIHVGGSGSLVDYTQEAGRAGRDGQIGRCLVVCSKAFADNHERLLDLEERDTKTAGSFRKLEDWVQMRQWLENNVLFRKNWLYGAMDEAQP 238
            N    + VI YHAGMS++ R   H QW    S S+ +N       I +MVCT A GA +D PNVR+V+H+GGS SLVDY QEAGRAGRDG + RC+V+ SK  AD+    L+ E  ++ T  ++RKL  W++ R W +++   RK+ LY AMD   P
Sbjct:   60 NYEKKISVIAYHAGMSENARMAAHKQWTSFSSTSNLTNDCMPVIDIGIMVCTSAFGAGVDAPNVRIVMHLGGSSSLVDYAQEAGRAGRDGLLARCVVLFSKRDADHLTSTLEKEATESFTEDAYRKLFGWLEARNWFQDSQSCRKHSLYAAMDGEGP 216          
BLAST of Ggra10896.t1 vs. uniprot
Match: A0A2V3IBG0 (ATP-dependent helicase SGS1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IBG0_9FLOR)

HSP 1 Score: 140 bits (353), Expect = 4.980e-33
Identity = 99/289 (34.26%), Postives = 138/289 (47.75%), Query Frame = 0
Query:   14 RLSLTATLPPSERSSIIALHGKRLALVFPMPT----------------------------KTVSVLNQEVTD-------------VEYISD---------------VPRSVYDSALASYGQSRSS-------NMRTNVQVIHYHAGMSQSRRTDVHNQWMGCFSDSD-SNKERKSFSIIVMVCTCASGAELDVPNVRLVIHVGGSGSLVDYTQEAGRAGRDGQIGRCLVVCSKAFADNHERLLDLEERDTKTAGSFRKLEDWVQMRQWLENNVLFRKNWLYGAMDEAQP 238
            R+ LTATLPP +R +++  H  R A++F  PT                             T+  L Q +T              +EY ++               +    Y+   ASY    S        N    + VI YHAGMS++ R   H QW    S S+ +N       I +MVCT A GA +D PNVR+V+H+GGS SLVDY QEAGRAGRDG + RC+V+ SK  AD+    L+ E  ++ T  ++RKL  W++ R W +++   RK+ LY AMD   P
Sbjct:  415 RVLLTATLPPRDRMNLLLQHRIRSAVLFKAPTVRRNLRFEVRSLKKIISETSRHPSGRFRSTIRDLLQALTTEMKLEMDGVCTNLLEYGNESKYSFRVLVYAMQRHIVEKAYEVLYASYVALPSGSTCNGELNYEKKISVIAYHAGMSENARMAAHKQWTSFSSTSNLTNDCMPVIDIGIMVCTSAFGAGVDAPNVRIVMHLGGSSSLVDYAQEAGRAGRDGLLARCVVLFSKRDADHLTSTLEKEATESFTEDAYRKLFGWLEARNWFQDSQSCRKHSLYAAMDGEGP 703          
BLAST of Ggra10896.t1 vs. uniprot
Match: A0A363TIA4 (Recombinase RecQ n=1 Tax=Bradyrhizobiaceae bacterium TaxID=2072420 RepID=A0A363TIA4_9BRAD)

HSP 1 Score: 77.0 bits (188), Expect = 9.460e-12
Identity = 58/188 (30.85%), Postives = 83/188 (44.15%), Query Frame = 0
Query:   15 LSLTATLPPSERSSIIALHGKR--LALVFPMPTKTVSVLNQEVTDVEYISDV---------PRSVYDSALASYGQSRSSNMRTNVQVIHYHAGMSQSRRTDVHNQWMGCFSDSDSNKERKSFSIIVMVCTCASGAELDVPNVRLVIHVGGSGSLVDYTQEAGRAGRDGQIGRCLVVCSKAFADNHERL 191
            L+LTAT  P  R+ I    G R  L +V P     + +  + V   E  S           P  +Y +   +  Q   +  R  + V+ YH  MS + RT    Q+M            K    ++MV T A G  +D PN+R ++H    GSL  Y QE GRAGRDG+   C+++   A  +  ERL
Sbjct:  281 LALTATATPHVRADIAERLGLRDPLVMVAPAHRANLRLAVEIVPGAEKFSAAGHLIRGLRRPGIIYCATTVAVDQLAGALGRARIPVVRYHGKMSAADRTTAQRQFM------------KPSRRLIMVATTAFGMGIDKPNIRYIVHFQAPGSLEQYVQEVGRAGRDGEPAHCILLFDAADLEIQERL 456          
BLAST of Ggra10896.t1 vs. uniprot
Match: A0A182MM52 (ATP-dependent DNA helicase n=1 Tax=Anopheles culicifacies TaxID=139723 RepID=A0A182MM52_9DIPT)

HSP 1 Score: 76.6 bits (187), Expect = 1.540e-11
Identity = 56/169 (33.14%), Postives = 85/169 (50.30%), Query Frame = 0
Query:   88 VQVIHYHAGMSQSRRTDVHNQWMGCFSDSDSNKERKSFSIIVMVCTCASGAELDVPNVRLVIHVGGSGSLVDYTQEAGRAGRDGQIGRCLVVCSKAFADNHERLL-----DLEERDTKTAGSFRKLEDWVQMRQWLENNVLFRKNWLYGAMDEAQPEDTRDSTNLDFRC 251
            +Q   YHAG+S +RR  V   ++             +  + ++V T A G  +D P+VRLVIH G S  L  Y QEAGRAGRDGQ GRC++  S+     HE L       L+E   + A   RK+ ++V++R      +L   N+  G + +    + + +T +  RC
Sbjct:  272 IQCEPYHAGISLTRRKQVLESFV-------------NDHVRIIVATIAFGMGIDKPDVRLVIHYGASKDLESYYQEAGRAGRDGQPGRCIMFWSQGDFKTHEILRAESSHSLKENQEQLA---RKMAEYVELRDCRRRFIL---NYFEGVLTQVNKAEEK-ATVVKQRC 420          
BLAST of Ggra10896.t1 vs. uniprot
Match: A0A507DDQ8 (ATP-dependent DNA helicase n=2 Tax=Synchytrium endobioticum TaxID=286115 RepID=A0A507DDQ8_9FUNG)

HSP 1 Score: 76.3 bits (186), Expect = 1.860e-11
Identity = 51/141 (36.17%), Postives = 70/141 (49.65%), Query Frame = 0
Query:  121 ERKSFSIIVMVC-TCASGAELDVPNVRLVIHVGGSGSLVDYTQEAGRAGRDGQIGRCLVVCSKAFADN---------HERLLDLEERDTKTAGSFRKLEDWVQMRQWLENNVLFRKNWLYGAMDEAQPEDTRDSTNLDFRC 251
            ++K   I+ +VC T + G  +D P+VR VIH     SL  Y QE+GRAGRDGQI RC++  S+   D           E+  D E+ D   AG  + LE + QM  + EN    R  ++     E  P DT    NL  +C
Sbjct:  333 DQKLDGIVDIVCATISFGMGIDRPDVRFVIHHDMPKSLEGYYQESGRAGRDGQISRCILYYSRDDRDRALFLLQSGKSEKYGDAEKGDENAAGGSKGLESFNQMTNYCENVTQCRHAFIVKYFGEQVPTDTAAKANLCAKC 473          
BLAST of Ggra10896.t1 vs. uniprot
Match: A0A146M5K5 (DNA helicase n=2 Tax=Lygus hesperus TaxID=30085 RepID=A0A146M5K5_LYGHE)

HSP 1 Score: 72.0 bits (175), Expect = 5.460e-10
Identity = 93/348 (26.72%), Postives = 154/348 (44.25%), Query Frame = 0
Query:    9 FPDTYRLSLTATLPPSERSSIIA---LHGKRLALV-FPMPTKTVSVLNQ-------EVTDVEYISDVPRS--VYDSALASYGQSRSSNMRTNVQVIHYHAGMSQSRRTDVHNQWMGCFSDSDSNKERKSFSIIVMVCTCASGAELDVPNVRLVIHVGGSGSLVDYTQEAGRAGRDGQIGRCLVVCSKAFADNHERLLDLEERDTKTAGSFRK--LEDWVQMRQWLENNVLFRKNWL---YGAMDEAQPEDTRDSTNLDFRCERWNEAK-----VLIEEVQKKLSDEDLIVVSATGNTSY-------VVKGNHD-RIRAVDLVKSKLQKEYRNDAPFDLAQLIQEQCVQ 325
            FP T  ++LTAT  P  R  I+    LH  +  L  F  P     VL +       E+T +        S  VY  +     Q+  +     ++   YHAG+S S+RTDV  +W+             +  I V+  T A G  +D P+VR VIH     S+  + QEAGRAGRDG+  +CL+  S  + D H     +E  + K +    K  +++  ++  + EN    R+  L   +G   +     +R  T  D  C    E K      L +EV K +S++   V + +  T++       V KG+ + +I++     S L  + ++ +  D+ +LI++  V+
Sbjct:  852 FPTTPIMALTATATPRVRKDILHQLNLHSPKWFLSSFDRPNLKYEVLEKKGARTIVEITALLKTRFARESGIVYCFSRKECDQTAQTLRLNQIKADAYHAGLSDSQRTDVQTKWI-------------TDKIKVVCATIAFGMGIDKPDVRFVIHYSLPKSIEGFYQEAGRAGRDGEKAQCLLYYS--YKDMHRIRSMIEFGNDKGSPEAIKTHIDNLWRIVSFCENKTECRRTMLLNYFGEKFDRSQCRSRPGTTCD-NCSTQGEFKSVDMTTLSKEVIKFISEKCGNVTNNSWATNFTANHVIDVCKGSENQKIKSSGHNSSNLHGQAKHFSRSDVERLIRKLTVE 1183          
BLAST of Ggra10896.t1 vs. uniprot
Match: A0A3S2NUZ3 (DNA helicase n=1 Tax=Chilo suppressalis TaxID=168631 RepID=A0A3S2NUZ3_CHISP)

HSP 1 Score: 71.2 bits (173), Expect = 9.650e-10
Identity = 69/248 (27.82%), Postives = 107/248 (43.15%), Query Frame = 0
Query:    9 FPDTYRLSLTATLPPSERSSIIALHGKRLA-------------LVFPMPTKTVSVLNQEVTDV---EYISDVPRSVYDSALASYGQSRSSNMRTNVQVIHYHAGMSQSRRTDVHNQWMGCFSDSDSNKERKSFSIIVMVCTCASGAELDVPNVRLVIHVGGSGSLVDYTQEAGRAGRDGQIGRCLVVCSKAFADNHERLLDLEERDTKTAGSFRKLEDWVQMRQWLENNVLFRKNWLYGAMDEAQPED 240
            FP T  ++LTAT  P  R  I  LH  ++              L++ +  K    +NQ++  +   ++  D    VY  +            +  +Q   YHAG+S  +R  V   W+     +D +K        V+  T A G  +D  +VR VIH     S+  Y QEAGRAGRDG++  CL+  S A    + RL DLE   T  A    + E+ ++M +  E     R+  +   + E  P +
Sbjct:  773 FPFTNIMALTATATPRVRMDI--LHQLKVTECKWFLSSFNRPNLIYRIMEKKPKSINQDIAAIIKEKFFRD-SGIVYCLSRKECDALAKDLRKVGIQAAAYHAGLSDKQREQVQAAWI-----ADRHK--------VICATIAFGMGVDKADVRFVIHHSMPKSVEGYYQEAGRAGRDGELATCLLYYSYADVVRYRRLFDLERNATPDARRVHE-ENLLRMVEVCEAVAECRRTQVLAYLGERFPRE 1003          
BLAST of Ggra10896.t1 vs. uniprot
Match: uncharacterized protein n=1 Tax=Colletotrichum fructicola TaxID=690256 RepID=UPI00132C9592 (uncharacterized protein n=1 Tax=Colletotrichum fructicola TaxID=690256 RepID=UPI00132C9592)

HSP 1 Score: 68.9 bits (167), Expect = 1.550e-9
Identity = 57/174 (32.76%), Postives = 83/174 (47.70%), Query Frame = 0
Query:  129 VMVCTCASGAELDVPNVRLVIHVGGSGSLVDYTQEAGRAGRDGQIGRCLVVCSKAFADNHERLLDLEE--RDTKTAGSFRKLEDW-VQMRQWLENNVLFRKNWLYGAMDEAQPEDTRDSTNLDFRCERWNEAKVLIEEVQKKLSDED-----LIVVSATGNTSYVVKGNHDRIR 294
            V+V T A G  +DVP+VRLV+H G    L D+ QE+GRAGRDGQ  R +V+CS+A  +  E+  +  E  +D + AG       W V  R ++   V  R       +DE     T  S      CE   EA  + ++   ++   D        V A G T +V++   +R R
Sbjct:   37 VIVATNALGLGIDVPDVRLVVHAGMPRRLRDFVQESGRAGRDGQPSRSVVICSRAAVEEEEKEKEAGEAAKDGRAAGG-----GWEVSTRIYIRGEVCRRI-----VLDEVMDGRTDRSG-----CEEGEEACDMCQQRASEVMWADDGGDVQAAVGAMGGTVHVLRDTPERER 195          
The following BLAST results are available for this feature:
BLAST of Ggra10896.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3ILV11.230e-3334.74ATP-dependent helicase SGS1 n=1 Tax=Gracilariopsis... [more]
A0A2V3IET82.830e-3346.50Bloom syndrome protein n=1 Tax=Gracilariopsis chor... [more]
A0A2V3ILS94.960e-3346.50Putative ATP-dependent DNA helicase Q1 n=1 Tax=Gra... [more]
A0A2V3IBG04.980e-3334.26ATP-dependent helicase SGS1 n=1 Tax=Gracilariopsis... [more]
A0A363TIA49.460e-1230.85Recombinase RecQ n=1 Tax=Bradyrhizobiaceae bacteri... [more]
A0A182MM521.540e-1133.14ATP-dependent DNA helicase n=1 Tax=Anopheles culic... [more]
A0A507DDQ81.860e-1136.17ATP-dependent DNA helicase n=2 Tax=Synchytrium end... [more]
A0A146M5K55.460e-1026.72DNA helicase n=2 Tax=Lygus hesperus TaxID=30085 Re... [more]
A0A3S2NUZ39.650e-1027.82DNA helicase n=1 Tax=Chilo suppressalis TaxID=1686... [more]
uncharacterized protein n=1 Tax=Colletotrichum fructicola TaxID=690256 RepID=UPI00132C95921.550e-932.76uncharacterized protein n=1 Tax=Colletotrichum fru... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001650Helicase, C-terminalSMARTSM00490helicmild6coord: 71..171
e-value: 3.6E-9
score: 46.5
IPR001650Helicase, C-terminalPFAMPF00271Helicase_Ccoord: 85..170
e-value: 2.0E-7
score: 31.3
IPR001650Helicase, C-terminalPROSITEPS51194HELICASE_CTERcoord: 50..213
score: 13.581219
IPR027417P-loop containing nucleoside triphosphate hydrolaseGENE3D3.40.50.300coord: 27..260
e-value: 5.1E-27
score: 96.7
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 87..221
NoneNo IPR availablePANTHERPTHR13710DNA HELICASE RECQ FAMILY MEMBERcoord: 14..270

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000098_piloncontigtig00000098_pilon:49278..52083 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10896.t1Ggra10896.t1Gracilaria gracilis GNS1m malemRNAtig00000098_pilon 49278..52083 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra10896.t1 ID=Ggra10896.t1|Name=Ggra10896.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=355bp
MFGTLCYTFPDTYRLSLTATLPPSERSSIIALHGKRLALVFPMPTKTVSV
LNQEVTDVEYISDVPRSVYDSALASYGQSRSSNMRTNVQVIHYHAGMSQS
RRTDVHNQWMGCFSDSDSNKERKSFSIIVMVCTCASGAELDVPNVRLVIH
VGGSGSLVDYTQEAGRAGRDGQIGRCLVVCSKAFADNHERLLDLEERDTK
TAGSFRKLEDWVQMRQWLENNVLFRKNWLYGAMDEAQPEDTRDSTNLDFR
CERWNEAKVLIEEVQKKLSDEDLIVVSATGNTSYVVKGNHDRIRAVDLVK
SKLQKEYRNDAPFDLAQLIQEQCVQVEEENRRKEGLVVEGSLLDKSMRLL
PPQI*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001650Helicase_C
IPR027417P-loop_NTPase