Ggra10879.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra10879.t1
Unique NameGgra10879.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length303
Homology
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BLAST of Ggra10879.t1 vs. uniprot
Match: L1IQ96 (Syntaxin E n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IQ96_GUITC)

HSP 1 Score: 62.4 bits (150), Expect = 8.070e-8
Identity = 54/173 (31.21%), Postives = 96/173 (55.49%), Query Frame = 0 
Query:  136 SDALQHSIRAEKL---FVDSVHDAQAERRDRLQKENE--AALQQEREALRIASEADPLL-RSAQRTQRERATLRELSSNQSLAHETNQVLTEVQSSIDDVNTIFKDLAVMVGDQSSQVEYVEVAVADSTQNVQRAHRELQKTKKRHERNKRFFFASLITVALVVAVLLIILLS 302
            S + +H I + KL   F  ++   Q   R  LQKE E  A  +Q REA     E + LL R  +R+ +     +EL   ++L  E  Q + +++ +++DVN IF+DLA++V DQ   ++ +E  + ++  + + A  EL+K +   +R +R  F  LITV ++V  L+I++++
Sbjct:   50 SGSQRHKIESRKLSDDFQKALQRFQEVVRTTLQKERESVARAKQAREADEEDEEREGLLERQTERSLQFMQDDQELQFTEALIFERQQGIKDIEKNVNDVNEIFRDLAILVSDQGHMLDDIESGIVNTAAHAESASEELKKAQANQKRARRTLFC-LITVLVLVGALVILIVT 221
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BLAST of Ggra10879.t1 vs. uniprot
Match: C1MHF7 (Syntaxin related protein, t_SNARE n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1MHF7_MICPC)

HSP 1 Score: 60.1 bits (144), Expect = 8.270e-7
Identity = 37/119 (31.09%), Postives = 68/119 (57.14%), Query Frame = 0 
Query:  184 EADPLLRSAQRTQRERATLRELSSNQSLAHETNQVLTEVQSSIDDVNTIFKDLAVMVGDQSSQVEYVEVAVADSTQNVQRAHRELQKTKKRHERNKRFFFASLITVALVVAVLLIILLS 302
            E   LL+ ++R ++E  T  E+  N +L  E  + + E+Q  I +VN IF+DLAV+V +Q S ++ +E  +  +    + A REL K     +  +      ++T+A+V+ +LL++LL+
Sbjct:  156 EKQSLLQESRRREKEH-TEGEMEFNDALIQERERGILEIQQQIGEVNEIFQDLAVLVNEQGSMIDDIEANIVSTASRTKDAQRELSKADASQKAARNRMLCLVVTIAIVLTILLLVLLN 273
The following BLAST results are available for this feature:
BLAST of Ggra10879.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
L1IQ968.070e-831.21Syntaxin E n=1 Tax=Guillardia theta (strain CCMP27... [more]
C1MHF78.270e-731.09Syntaxin related protein, t_SNARE n=1 Tax=Micromon... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 254..278
NoneNo IPR availableCOILSCoilCoilcoord: 154..181
NoneNo IPR availableGENE3D1.20.5.110coord: 191..302
e-value: 1.2E-15
score: 59.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 49..82
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 57..81
NoneNo IPR availablePANTHERPTHR19957:SF38LD23667Pcoord: 87..294
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..280
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 281..301
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 302..302
NoneNo IPR availableCDDcd15840SNARE_Qacoord: 214..270
e-value: 2.30825E-10
score: 53.6717
NoneNo IPR availableTMHMMTMhelixcoord: 281..300
IPR000727Target SNARE coiled-coil homology domainSMARTSM00397tSNARE_6coord: 204..271
e-value: 2.8E-5
score: 33.5
IPR000727Target SNARE coiled-coil homology domainPROSITEPS50192T_SNAREcoord: 209..271
score: 14.592358
IPR045242SyntaxinPANTHERPTHR19957SYNTAXINcoord: 87..294
IPR010989SNARESUPERFAMILY47661t-snare proteinscoord: 100..264

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000125_piloncontigtig00000125_pilon:281251..282159 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10879.t1Ggra10879.t1Gracilaria gracilis GNS1m malemRNAtig00000125_pilon 281251..282159 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra10879.t1 ID=Ggra10879.t1|Name=Ggra10879.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=303bp
MSFGDAAPTLAAADAQSAPAIGELQRLLKPLAANNAALRHTTKALLRARA
RAAVAPSSSPPPSPSPLPSPSPLPSPSPPPDLKRVRALREQNRHIARAAA
ALVSAIDTRLAAASAPVAQRAAAAKRQFQLHLDDFSDALQHSIRAEKLFV
DSVHDAQAERRDRLQKENEAALQQEREALRIASEADPLLRSAQRTQRERA
TLRELSSNQSLAHETNQVLTEVQSSIDDVNTIFKDLAVMVGDQSSQVEYV
EVAVADSTQNVQRAHRELQKTKKRHERNKRFFFASLITVALVVAVLLIIL
LS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000727T_SNARE_dom
IPR045242Syntaxin
IPR010989SNARE