Ggra10708.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra10708.t1
Unique NameGgra10708.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length152
Homology
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BLAST of Ggra10708.t1 vs. uniprot
Match: A0A2V3IHE2 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IHE2_9FLOR)

HSP 1 Score: 157 bits (396), Expect = 2.770e-46
Identity = 68/138 (49.28%), Postives = 99/138 (71.74%), Query Frame = 0 
Query:   13 ATVWSGSQGTFCTDDNPLPLLLVEEDFEAFNECDFKRLLRIRTDDFRLFTPRGGVIDGKQAVEQLITDVCKPFPLGFRGLRFSINDSIIAGSSIIVRWVATAPFIEDYYGSDAYFTRGYKLSAGVSTFDALELNITAS 150
            AT +  S+ T+C+ + PLP+ + EE  EA N+C+ KRL+++RTDDF  + PRG V  G+       T++CKPFP GFRGL+ +I ++ + G++  VRWV +APF EDY+G+DAY TRG+K++A V+TFD+ ELN T S
Sbjct:   23 ATYYRPSRPTYCSYEKPLPIQVTEEHIEALNDCNVKRLVQLRTDDFIFYFPRGDVSKGRAGALTTFTNLCKPFPEGFRGLKLTIKEAFLVGNTYNVRWVISAPFFEDYHGADAYVTRGFKMAAQVTTFDSEELNFTRS 160
The following BLAST results are available for this feature:
BLAST of Ggra10708.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IHE22.770e-4649.28Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.10.450.50coord: 28..143
e-value: 1.7E-10
score: 42.8
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 7..16
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 17..21
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..21
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 22..151
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..6
IPR037401SnoaL-like domainPFAMPF12680SnoaL_2coord: 36..115
e-value: 3.7E-7
score: 30.7
IPR032710NTF2-like domain superfamilySUPERFAMILY54427NTF2-likecoord: 34..117

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000888_piloncontigtig00000888_pilon:609448..609903 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10708.t1Ggra10708.t1Gracilaria gracilis GNS1m malemRNAtig00000888_pilon 609448..609903 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra10708.t1 ID=Ggra10708.t1|Name=Ggra10708.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=152bp
MVRVEMLVLVVVATVWSGSQGTFCTDDNPLPLLLVEEDFEAFNECDFKRL
LRIRTDDFRLFTPRGGVIDGKQAVEQLITDVCKPFPLGFRGLRFSINDSI
IAGSSIIVRWVATAPFIEDYYGSDAYFTRGYKLSAGVSTFDALELNITAS
V*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR037401SnoaL-like
IPR032710NTF2-like_dom_sf