Ggra10017.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra10017.t1
Unique NameGgra10017.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length776
Homology
BLAST of Ggra10017.t1 vs. uniprot
Match: R7Q468 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q468_CHOCR)

HSP 1 Score: 187 bits (474), Expect = 5.560e-52
Identity = 90/127 (70.87%), Postives = 104/127 (81.89%), Query Frame = 0
Query:  649 ETVRQEVAPKGGYARINVARNVPKTIGTGAGPLLLGTALLMGYGMYRVGSFNVKRRELRQEKKNIRLAIIPFLQAEEDARFVAKRDEYHNWEAAIMKDVPGWKVGENVYQTRKFVPPVGGEPPFTHN 775
            +TVRQEVAPKGGYA INVARNVPK+IG  AG LL+GTA +M YG Y+VG+FNVKRR LRQEKK +R AI P LQAEED RFVA+R EYH WEA +MKDVPGW+VG+NVY+TR FVPP     P+ H+
Sbjct:   16 KTVRQEVAPKGGYAPINVARNVPKSIGGSAGLLLVGTAAMMSYGFYKVGTFNVKRRMLRQEKKEVRFAITPLLQAEEDVRFVAQRKEYHEWEADVMKDVPGWEVGKNVYKTRNFVPPTPVLAPYKHD 142          
BLAST of Ggra10017.t1 vs. uniprot
Match: A0A7J7IHL6 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IHL6_9RHOD)

HSP 1 Score: 114 bits (286), Expect = 3.910e-26
Identity = 54/113 (47.79%), Postives = 78/113 (69.03%), Query Frame = 0
Query:  653 QEVAPKGGYARINVARNVPKTIGTGAGPLLLGTALLMGYGMYRVGSFNVKRRELRQEKKNIRLAIIPFLQAEEDARFVAKRDEYHNWEAAIMKDVPGWKV-GENVYQTRKFVP 764
            Q+  P GGY R++V RN+P+ +G  A  L LG A++M YG +RVG+FNV RREL +E++ +R A++PFLQAEED R++  R  +  WE+ +M+ VP WK   E +Y+TR   P
Sbjct:   26 QDGPPAGGYPRLDVRRNLPRNVGPSATFLFLGGAVVMAYGFWRVGTFNVHRRELLEERQQVRAALVPFLQAEEDQRYLEARARWEAWESKVMEHVPDWKEKNEPIYKTRSHGP 138          
BLAST of Ggra10017.t1 vs. uniprot
Match: M1UR10 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 n=2 Tax=cellular organisms TaxID=131567 RepID=M1UR10_CYAM1)

HSP 1 Score: 113 bits (283), Expect = 1.020e-25
Identity = 52/113 (46.02%), Postives = 79/113 (69.91%), Query Frame = 0
Query:  653 QEVAPKGGYARINVARNVPKTIGTGAGPLLLGTALLMGYGMYRVGSFNVKRRELRQEKKNIRLAIIPFLQAEEDARFVAKRDEYHNWEAAIMKDVPGW-KVGENVYQTRKFVP 764
            Q+  P GGY R++V RN+P+ +G  A  L LG+AL+M YG +R+G++N+ RREL +E++ +R A+ PFLQAEED R++  + ++  WEA +M+ VP W K  E +Y+TR   P
Sbjct:   26 QDGPPPGGYPRLDVRRNLPRNVGPSATALFLGSALVMAYGFWRMGNYNLHRRELLEERRQVRAALAPFLQAEEDERYLKAKAQWEAWEAKVMEHVPDWEKKREPIYKTRSHGP 138          
BLAST of Ggra10017.t1 vs. uniprot
Match: A0A7J6VRF1 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 n=3 Tax=Mesangiospermae TaxID=1437183 RepID=A0A7J6VRF1_THATH)

HSP 1 Score: 110 bits (276), Expect = 8.710e-25
Identity = 59/119 (49.58%), Postives = 79/119 (66.39%), Query Frame = 0
Query:  651 VRQEVAPKGGYARINVARNVPKTIGTGAGPLLLGTALLMGYGMYRVGSFNVKRRELRQEKKNIRLAIIPFLQAEEDARFVAKRDEYHNWEAAIMKDVPGWKVGENVYQTRKFVPPVGGE 769
            V Q+  P GG+A +  AR +P T G  A  + L T  +  +GMY+VG  N  RR L++EK   R AI+P LQAEED RFV + ++Y   EA IMKDVPGWKVGE+VY +++++PP  GE
Sbjct:   20 VLQDGPPPGGFAPVRYARRIP-TKGPSAIAIFLATFGIFSWGMYQVGQGNKIRRALKEEKYAARRAILPILQAEEDERFVKEWNKYLEEEARIMKDVPGWKVGESVYHSKRWMPPATGE 137          
BLAST of Ggra10017.t1 vs. uniprot
Match: A0A514Y9Y4 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 n=12 Tax=Mesangiospermae TaxID=1437183 RepID=A0A514Y9Y4_POLCS)

HSP 1 Score: 109 bits (272), Expect = 3.010e-24
Identity = 59/117 (50.43%), Postives = 76/117 (64.96%), Query Frame = 0
Query:  653 QEVAPKGGYARINVARNVPKTIGTGAGPLLLGTALLMGYGMYRVGSFNVKRRELRQEKKNIRLAIIPFLQAEEDARFVAKRDEYHNWEAAIMKDVPGWKVGENVYQTRKFVPPVGGE 769
            Q+  P GG+A +  AR +P T G  A  + L T     +GMY+VG  N KRR L++EK   R AI+PFLQAEED RFV +  +Y   EA IMKDVPGWKV E+VY + +++PP  GE
Sbjct:   22 QDGPPPGGFAPVRYARRIP-TSGPSAMAIFLATFGAFSWGMYQVGVGNKKRRALKEEKYAARRAILPFLQAEEDERFVKEWKKYLEEEARIMKDVPGWKVDESVYHSGRWMPPATGE 137          
BLAST of Ggra10017.t1 vs. uniprot
Match: A0A4Y7KAK4 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 n=2 Tax=Papaver somniferum TaxID=3469 RepID=A0A4Y7KAK4_PAPSO)

HSP 1 Score: 108 bits (271), Expect = 4.100e-24
Identity = 58/129 (44.96%), Postives = 81/129 (62.79%), Query Frame = 0
Query:  642 NSLISKRET-VRQEVAPKGGYARINVARNVPKTIGTGAGPLLLGTALLMGYGMYRVGSFNVKRRELRQEKKNIRLAIIPFLQAEEDARFVAKRDEYHNWEAAIMKDVPGWKVGENVYQTRKFVPPVGGE 769
            + ++S +E  + Q+  P GG+A +  AR +P T G  A  + L T     +GMY VG  N  RR  ++EK   R AI+P LQAEED RF ++  +Y   EA IMKDVPGWKVGE+VY +++++PP  GE
Sbjct:   10 SGMVSVKEMPILQDGPPPGGFAPVRYARRIP-TKGPSAVAIFLATFTAFSWGMYEVGKGNKIRRAFKEEKYAARRAILPMLQAEEDERFASEWKKYLEEEARIMKDVPGWKVGESVYHSKRWMPPASGE 137          
BLAST of Ggra10017.t1 vs. uniprot
Match: A0A2I0AYJ5 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 n=4 Tax=Magnoliopsida TaxID=3398 RepID=A0A2I0AYJ5_9ASPA)

HSP 1 Score: 108 bits (270), Expect = 5.600e-24
Identity = 61/127 (48.03%), Postives = 80/127 (62.99%), Query Frame = 0
Query:  644 LISKRET-VRQEVAPKGGYARINVARNVPKTIGTGAGPLLLGTALLMGYGMYRVGSFNVKRRELRQEKKNIRLAIIPFLQAEEDARFVAKRDEYHNWEAAIMKDVPGWKVGENVYQTRKFVPPVGGE 769
            ++S RE  V Q+  P GG+  +  AR +P T G  A  + L       YGMY++G  N  RREL++EK   R A++P LQAEED RFV +  +Y   EA IMKDVPGWKVGE+VY + ++VPP  GE
Sbjct:   12 MVSVREMPVLQDGPPPGGFPPVRYARRIP-TKGPSAVAIFLTAFGAFAYGMYQIGKGNRIRRELKEEKYAARRALVPVLQAEEDERFVKEWKKYLEEEARIMKDVPGWKVGESVYHSGRWVPPATGE 137          
BLAST of Ggra10017.t1 vs. uniprot
Match: A0A4D8YYQ0 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 n=1 Tax=Salvia splendens TaxID=180675 RepID=A0A4D8YYQ0_SALSN)

HSP 1 Score: 108 bits (269), Expect = 7.630e-24
Identity = 58/119 (48.74%), Postives = 76/119 (63.87%), Query Frame = 0
Query:  651 VRQEVAPKGGYARINVARNVPKTIGTGAGPLLLGTALLMGYGMYRVGSFNVKRRELRQEKKNIRLAIIPFLQAEEDARFVAKRDEYHNWEAAIMKDVPGWKVGENVYQTRKFVPPVGGE 769
            V Q+  P GG+A +  AR +P T G  A  + L T  +  +GMY VG  N  RR +++EK   R AI+P +QAEED RFV +  +Y   EA IMKDVPGWKVGE+VY + K++PP  GE
Sbjct:   20 VMQDGPPPGGFAPVRFARRIPNT-GPSAMAIFLTTFGVFSWGMYEVGKGNKIRRAIKEEKYAARRAILPVIQAEEDERFVKEWKKYLAEEARIMKDVPGWKVGESVYHSGKWMPPASGE 137          
BLAST of Ggra10017.t1 vs. uniprot
Match: A9S1D8 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A9S1D8_PHYPA)

HSP 1 Score: 107 bits (266), Expect = 1.880e-23
Identity = 57/131 (43.51%), Postives = 85/131 (64.89%), Query Frame = 0
Query:  640 GDNSLISKRET-VRQEVAPKGGYARINVARNVPKTIGTGAGPLLLGTALLMGYGMYRVGSFNVKRRELRQEKKNIRLAIIPFLQAEEDARFVAKRDEYHNWEAAIMKDVPGWKVGENVYQTRKFVPPVGGE 769
            G   + S +E  V Q+  P GG+  +  AR +  T  +G   LL+ +A++ G+GMY+VG  N+ RR L+ EK   R AI+P +QAEEDARFV ++++    EA +M +VPGWKVGENVY + +++PP  G+
Sbjct:    8 GQKGMTSVKEMPVLQDGPPPGGFPAVRYARRIANTGPSGVTVLLVSSAII-GWGMYQVGQGNIYRRGLKAEKIAARQAILPLIQAEEDARFVREKNKLLEEEAKVMANVPGWKVGENVYNSGRWMPPSSGK 137          
BLAST of Ggra10017.t1 vs. uniprot
Match: A0A2R6R904 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 n=7 Tax=Mesangiospermae TaxID=1437183 RepID=A0A2R6R904_ACTCC)

HSP 1 Score: 107 bits (266), Expect = 1.930e-23
Identity = 57/119 (47.90%), Postives = 75/119 (63.03%), Query Frame = 0
Query:  651 VRQEVAPKGGYARINVARNVPKTIGTGAGPLLLGTALLMGYGMYRVGSFNVKRRELRQEKKNIRLAIIPFLQAEEDARFVAKRDEYHNWEAAIMKDVPGWKVGENVYQTRKFVPPVGGE 769
            V Q+  P GG+  +  AR +P   G  A  + L T     +GMY+VG  N  RRE+++EK   R A++P LQAEED RFV +  +Y   EA IMKDVPGWKVGE+VY + K++PP  GE
Sbjct:   20 VLQDGPPPGGFPPVRFARRIPNK-GPSAVAIFLATFGAFSWGMYQVGKGNKIRREIKEEKYAARRALVPMLQAEEDERFVQEWKKYLEEEARIMKDVPGWKVGESVYHSGKWMPPATGE 137          
The following BLAST results are available for this feature:
BLAST of Ggra10017.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
R7Q4685.560e-5270.87NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
A0A7J7IHL63.910e-2647.79NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
M1UR101.020e-2546.02NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
A0A7J6VRF18.710e-2549.58NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
A0A514Y9Y43.010e-2450.43NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
A0A4Y7KAK44.100e-2444.96NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
A0A2I0AYJ55.600e-2448.03NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
A0A4D8YYQ07.630e-2448.74NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
A9S1D81.880e-2343.51NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
A0A2R6R9041.930e-2347.90NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009346GRIM-19PFAMPF06212GRIM-19coord: 651..766
e-value: 2.8E-31
score: 108.2
IPR009346GRIM-19PANTHERPTHR12966NADH DEHYDROGENASE UBIQUINONE 1 ALPHA SUBCOMPLEX SUBUNIT 13coord: 647..769
NoneNo IPR availableGENE3D3.40.395.10Adenoviral Proteinase; Chain Acoord: 1..133
e-value: 2.2E-5
score: 25.9
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..673
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 695..775
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 674..694
IPR038765Papain-like cysteine peptidase superfamilySUPERFAMILY54001Cysteine proteinasescoord: 2..117

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000222_piloncontigtig00000222_pilon:67003..74451 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10017.t1Ggra10017.t1Gracilaria gracilis GNS1m malemRNAtig00000222_pilon 67003..74451 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra10017.t1 ID=Ggra10017.t1|Name=Ggra10017.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=776bp
MNTVVVPLNLDQQHWGILVGKRYIGSKRARRDYPTVYFGDSLRWKCPENV
ITFFKEAFEVIVLGGEGSAELSKRNYMLDVRGYKRQSDSFSCGCYVIACA
TEFVSNRGFAPSKTYKSGYSAVLSEQYRWMAIRSRVLQILLASQFYNTER
VTETMVSRYRLDNRKHYYQIRAEGQNRLKNMRHPVLKRSDFKLEKGSGIA
EALLTPQTTAYVGGDAKKECVAESNEVMMKDNFESNTSIKDAIEECFSSI
CGVASTAEKKLDDDDDISPSNCSAGDRGGQLGLSVRARVKLLNAKALSVP
TRTSERRVRFVDSSMAVKGVVDGILMDVFQRVGSKDTKEVGKLMDMSTFD
LLKPVADRPGTYLEGDVFSIIALLASIAQSKGFLYGLHYFRYVQLRRKGN
ERLISGRFRCQRHSKYASSCPSNVMVSLPSLNADWKVRVNLHHTHEPTQV
SESDIQQRNKSLEKTMQARFRTWKGKEKGKDNTYWELLYRKCFPDHSASA
IHVQRNVGEDVFLFPDGVSVQENILAGSCRTTHDNEGRSIQPKPIQIKTL
QPTKQAVSIVGPPPQHPFHVLNFQGVHAMGSTHSRSDVERHINSTVGIGS
LRIDERTPVPVADVSDVRMGSTADVTYVDSDVTHVHAELGDNSLISKRET
VRQEVAPKGGYARINVARNVPKTIGTGAGPLLLGTALLMGYGMYRVGSFN
VKRRELRQEKKNIRLAIIPFLQAEEDARFVAKRDEYHNWEAAIMKDVPGW
KVGENVYQTRKFVPPVGGEPPFTHN*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009346GRIM-19
IPR038765Papain-like_cys_pep_sf