Ggra9996.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9996.t1
Unique NameGgra9996.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length280
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000213_piloncontigtig00000213_pilon:138199..139038 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9996Ggra9996Gracilaria gracilis GNS1m malegenetig00000213_pilon 138199..139038 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9996.t1.start1Ggra9996.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000213_pilon 138199..138201 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9996.t1.CDS1Ggra9996.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000213_pilon 138199..139038 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9996.t1.exon1Ggra9996.t1.exon1Gracilaria gracilis GNS1m maleexontig00000213_pilon 138199..139038 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9996.t1.stop1Ggra9996.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000213_pilon 139036..139038 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9996.t1Ggra9996.t1Gracilaria gracilis GNS1m malepolypeptidetig00000213_pilon 138199..139038 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9996.t1 ID=Ggra9996.t1|Name=Ggra9996.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=280bp
MSDRSHPAILAESTAEGERVASSSPPANVSGMGNGARTLQPNQDTRFANE
TPSNALPNQTSSLPYQSFGGAYSNPYYSPYNPNYGGSYLGGYGNGFGSYS
NAYGSAFGGYGGNFGGNPAFNHGTRQQVSAGQVLDGARQTSEMVMTGMHD
AMARFARVSSMIEDILRNLHMLFDALFGLGYSLGAFKHEATMWLAVKTGP
VAYIARVLGRAASVWKLLCLFFMSPLAGRFSPVALVLRILGLVPEDDPLE
IALEEYRRRREEASIPGNQPSASADGSSL*
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spliced messenger RNA

>Ggra9996.t1 ID=Ggra9996.t1|Name=Ggra9996.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=840bp|location=Sequence derived from alignment at tig00000213_pilon:138199..139038+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTGACAGATCCCATCCGGCCATATTGGCTGAGTCGACAGCAGAAGG
AGAAAGGGTTGCTTCTTCCAGTCCGCCAGCCAATGTTTCTGGTATGGGAA
ATGGGGCAAGAACATTGCAACCCAATCAAGACACTAGATTTGCGAACGAA
ACCCCATCGAATGCGCTCCCAAATCAAACGAGTTCTCTTCCCTACCAATC
ATTCGGTGGAGCTTATTCCAACCCATACTATAGTCCGTACAATCCTAATT
ACGGCGGTTCTTACTTAGGCGGGTACGGAAATGGTTTTGGAAGCTACAGT
AATGCTTATGGCTCTGCGTTCGGAGGATACGGCGGGAACTTCGGCGGAAA
TCCTGCCTTTAACCATGGCACTCGTCAGCAAGTCTCAGCAGGACAAGTAC
TGGACGGTGCTAGACAAACTTCGGAGATGGTTATGACGGGCATGCACGAC
GCGATGGCAAGATTTGCTAGAGTTTCATCAATGATTGAAGATATACTTCG
CAATCTTCACATGCTGTTTGACGCGTTATTTGGCCTAGGGTATAGCTTGG
GTGCGTTCAAACACGAGGCCACAATGTGGCTTGCCGTCAAGACGGGTCCA
GTTGCCTACATTGCGAGAGTTCTTGGTAGGGCTGCCAGTGTTTGGAAACT
TTTATGTCTGTTCTTTATGTCACCACTTGCGGGAAGATTTTCTCCGGTGG
CTTTAGTCCTCAGAATTCTAGGTTTGGTGCCAGAAGATGACCCCCTTGAA
ATCGCACTTGAAGAATACCGAAGGAGGCGAGAAGAAGCATCAATTCCAGG
AAATCAACCGTCTGCATCTGCAGATGGTTCGAGTTTATGA
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protein sequence of Ggra9996.t1

>Ggra9996.t1 ID=Ggra9996.t1|Name=Ggra9996.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=280bp
MSDRSHPAILAESTAEGERVASSSPPANVSGMGNGARTLQPNQDTRFANE
TPSNALPNQTSSLPYQSFGGAYSNPYYSPYNPNYGGSYLGGYGNGFGSYS
NAYGSAFGGYGGNFGGNPAFNHGTRQQVSAGQVLDGARQTSEMVMTGMHD
AMARFARVSSMIEDILRNLHMLFDALFGLGYSLGAFKHEATMWLAVKTGP
VAYIARVLGRAASVWKLLCLFFMSPLAGRFSPVALVLRILGLVPEDDPLE
IALEEYRRRREEASIPGNQPSASADGSSL*
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mRNA from alignment at tig00000213_pilon:138199..139038+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9996.t1 ID=Ggra9996.t1|Name=Ggra9996.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=840bp|location=Sequence derived from alignment at tig00000213_pilon:138199..139038+ (Gracilaria gracilis GNS1m male)
ATGAGTGACAGATCCCATCCGGCCATATTGGCTGAGTCGACAGCAGAAGG
AGAAAGGGTTGCTTCTTCCAGTCCGCCAGCCAATGTTTCTGGTATGGGAA
ATGGGGCAAGAACATTGCAACCCAATCAAGACACTAGATTTGCGAACGAA
ACCCCATCGAATGCGCTCCCAAATCAAACGAGTTCTCTTCCCTACCAATC
ATTCGGTGGAGCTTATTCCAACCCATACTATAGTCCGTACAATCCTAATT
ACGGCGGTTCTTACTTAGGCGGGTACGGAAATGGTTTTGGAAGCTACAGT
AATGCTTATGGCTCTGCGTTCGGAGGATACGGCGGGAACTTCGGCGGAAA
TCCTGCCTTTAACCATGGCACTCGTCAGCAAGTCTCAGCAGGACAAGTAC
TGGACGGTGCTAGACAAACTTCGGAGATGGTTATGACGGGCATGCACGAC
GCGATGGCAAGATTTGCTAGAGTTTCATCAATGATTGAAGATATACTTCG
CAATCTTCACATGCTGTTTGACGCGTTATTTGGCCTAGGGTATAGCTTGG
GTGCGTTCAAACACGAGGCCACAATGTGGCTTGCCGTCAAGACGGGTCCA
GTTGCCTACATTGCGAGAGTTCTTGGTAGGGCTGCCAGTGTTTGGAAACT
TTTATGTCTGTTCTTTATGTCACCACTTGCGGGAAGATTTTCTCCGGTGG
CTTTAGTCCTCAGAATTCTAGGTTTGGTGCCAGAAGATGACCCCCTTGAA
ATCGCACTTGAAGAATACCGAAGGAGGCGAGAAGAAGCATCAATTCCAGG
AAATCAACCGTCTGCATCTGCAGATGGTTCGAGTTTATGA
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Coding sequence (CDS) from alignment at tig00000213_pilon:138199..139038+

>Ggra9996.t1 ID=Ggra9996.t1|Name=Ggra9996.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=840bp|location=Sequence derived from alignment at tig00000213_pilon:138199..139038+ (Gracilaria gracilis GNS1m male)
ATGAGTGACAGATCCCATCCGGCCATATTGGCTGAGTCGACAGCAGAAGG
AGAAAGGGTTGCTTCTTCCAGTCCGCCAGCCAATGTTTCTGGTATGGGAA
ATGGGGCAAGAACATTGCAACCCAATCAAGACACTAGATTTGCGAACGAA
ACCCCATCGAATGCGCTCCCAAATCAAACGAGTTCTCTTCCCTACCAATC
ATTCGGTGGAGCTTATTCCAACCCATACTATAGTCCGTACAATCCTAATT
ACGGCGGTTCTTACTTAGGCGGGTACGGAAATGGTTTTGGAAGCTACAGT
AATGCTTATGGCTCTGCGTTCGGAGGATACGGCGGGAACTTCGGCGGAAA
TCCTGCCTTTAACCATGGCACTCGTCAGCAAGTCTCAGCAGGACAAGTAC
TGGACGGTGCTAGACAAACTTCGGAGATGGTTATGACGGGCATGCACGAC
GCGATGGCAAGATTTGCTAGAGTTTCATCAATGATTGAAGATATACTTCG
CAATCTTCACATGCTGTTTGACGCGTTATTTGGCCTAGGGTATAGCTTGG
GTGCGTTCAAACACGAGGCCACAATGTGGCTTGCCGTCAAGACGGGTCCA
GTTGCCTACATTGCGAGAGTTCTTGGTAGGGCTGCCAGTGTTTGGAAACT
TTTATGTCTGTTCTTTATGTCACCACTTGCGGGAAGATTTTCTCCGGTGG
CTTTAGTCCTCAGAATTCTAGGTTTGGTGCCAGAAGATGACCCCCTTGAA
ATCGCACTTGAAGAATACCGAAGGAGGCGAGAAGAAGCATCAATTCCAGG
AAATCAACCGTCTGCATCTGCAGATGGTTCGAGTTTATGA
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