Ggra9984.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9984.t1
Unique NameGgra9984.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length286
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000213_piloncontigtig00000213_pilon:99504..100361 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707441.1
PFAMsadh_short
Max annot lvl2759|Eukaryota
Evalue5.24e-50
EggNOG OGsCOG1028@1|root,KOG1205@2759|Eukaryota
Descriptionoxidation-reduction process
COG categoryIQ
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9984Ggra9984Gracilaria gracilis GNS1m malegenetig00000213_pilon 99504..100361 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9984.t1.stop1Ggra9984.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000213_pilon 99504..99506 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9984.t1.CDS1Ggra9984.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000213_pilon 99504..100361 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9984.t1.exon1Ggra9984.t1.exon1Gracilaria gracilis GNS1m maleexontig00000213_pilon 99504..100361 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9984.t1.start1Ggra9984.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000213_pilon 100359..100361 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9984.t1Ggra9984.t1Gracilaria gracilis GNS1m malepolypeptidetig00000213_pilon 99504..100361 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9984.t1 ID=Ggra9984.t1|Name=Ggra9984.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=286bp
MFVLVALLSAAAALLAAAAAHALHRRRVARALASLRGKHVWVVGASRGIG
RAVALHVASLGATVSVSSRASPALQRLAEQLGPSLRAAVPLDVTDVHAVS
AAAQRVFNAAPVDVVLANAGVNHQNKPFSMLHARQIDCVLDTNLRSVAHL
FSRVLPSLLQRGGVLCAVSSLSAYRGVSGASVYAATKAALTSLCQSLNVE
LYNSNVSVVCVHPGFVDTTAIANLKNPKPFLITEHQAAVHIVEAIAMKYP
HYGFPWLMEHVVLNFSSCVPTPIYNFIMSKVNVYP*
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spliced messenger RNA

>Ggra9984.t1 ID=Ggra9984.t1|Name=Ggra9984.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=858bp|location=Sequence derived from alignment at tig00000213_pilon:99504..100361- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTGTGCTCGTCGCGCTGCTGAGCGCCGCCGCCGCGCTGCTCGCCGC
CGCCGCCGCGCACGCGCTGCACCGCCGGCGCGTCGCGCGCGCGCTGGCGT
CGCTGCGCGGCAAGCACGTGTGGGTGGTGGGCGCGTCGCGCGGCATCGGC
CGCGCCGTCGCGCTGCATGTGGCGTCGCTGGGCGCCACCGTCAGCGTGTC
GTCGCGCGCGTCGCCCGCGCTGCAGCGGCTGGCCGAGCAGCTGGGGCCGT
CGCTGCGCGCCGCCGTGCCGCTGGACGTCACCGACGTGCACGCCGTGTCC
GCCGCGGCGCAGCGCGTGTTCAACGCGGCGCCTGTGGACGTCGTGCTCGC
CAACGCTGGTGTCAATCACCAGAATAAGCCCTTCTCCATGCTGCACGCGC
GCCAGATTGACTGCGTGCTGGATACTAACCTCAGGTCTGTGGCGCACCTT
TTCTCGCGAGTGCTGCCGTCGCTCCTCCAACGCGGCGGCGTGCTCTGCGC
TGTGTCGTCGCTCTCCGCCTACAGGGGCGTCAGCGGCGCCTCTGTGTACG
CCGCTACTAAAGCTGCGCTCACCTCTTTGTGTCAGTCCCTCAATGTAGAG
CTTTACAACTCCAACGTTTCTGTCGTCTGCGTGCACCCTGGCTTTGTCGA
CACAACTGCCATCGCCAATCTGAAAAACCCAAAGCCGTTCCTCATCACAG
AGCATCAGGCCGCCGTCCATATCGTTGAGGCCATCGCCATGAAGTACCCG
CACTACGGCTTCCCATGGCTCATGGAACATGTGGTGCTCAACTTCTCGTC
ATGCGTTCCTACTCCCATTTACAACTTTATCATGTCAAAGGTAAATGTGT
ACCCGTGA
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protein sequence of Ggra9984.t1

>Ggra9984.t1 ID=Ggra9984.t1|Name=Ggra9984.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=286bp
MFVLVALLSAAAALLAAAAAHALHRRRVARALASLRGKHVWVVGASRGIG
RAVALHVASLGATVSVSSRASPALQRLAEQLGPSLRAAVPLDVTDVHAVS
AAAQRVFNAAPVDVVLANAGVNHQNKPFSMLHARQIDCVLDTNLRSVAHL
FSRVLPSLLQRGGVLCAVSSLSAYRGVSGASVYAATKAALTSLCQSLNVE
LYNSNVSVVCVHPGFVDTTAIANLKNPKPFLITEHQAAVHIVEAIAMKYP
HYGFPWLMEHVVLNFSSCVPTPIYNFIMSKVNVYP*
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mRNA from alignment at tig00000213_pilon:99504..100361-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9984.t1 ID=Ggra9984.t1|Name=Ggra9984.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=858bp|location=Sequence derived from alignment at tig00000213_pilon:99504..100361- (Gracilaria gracilis GNS1m male)
ATGTTTGTGCTCGTCGCGCTGCTGAGCGCCGCCGCCGCGCTGCTCGCCGC
CGCCGCCGCGCACGCGCTGCACCGCCGGCGCGTCGCGCGCGCGCTGGCGT
CGCTGCGCGGCAAGCACGTGTGGGTGGTGGGCGCGTCGCGCGGCATCGGC
CGCGCCGTCGCGCTGCATGTGGCGTCGCTGGGCGCCACCGTCAGCGTGTC
GTCGCGCGCGTCGCCCGCGCTGCAGCGGCTGGCCGAGCAGCTGGGGCCGT
CGCTGCGCGCCGCCGTGCCGCTGGACGTCACCGACGTGCACGCCGTGTCC
GCCGCGGCGCAGCGCGTGTTCAACGCGGCGCCTGTGGACGTCGTGCTCGC
CAACGCTGGTGTCAATCACCAGAATAAGCCCTTCTCCATGCTGCACGCGC
GCCAGATTGACTGCGTGCTGGATACTAACCTCAGGTCTGTGGCGCACCTT
TTCTCGCGAGTGCTGCCGTCGCTCCTCCAACGCGGCGGCGTGCTCTGCGC
TGTGTCGTCGCTCTCCGCCTACAGGGGCGTCAGCGGCGCCTCTGTGTACG
CCGCTACTAAAGCTGCGCTCACCTCTTTGTGTCAGTCCCTCAATGTAGAG
CTTTACAACTCCAACGTTTCTGTCGTCTGCGTGCACCCTGGCTTTGTCGA
CACAACTGCCATCGCCAATCTGAAAAACCCAAAGCCGTTCCTCATCACAG
AGCATCAGGCCGCCGTCCATATCGTTGAGGCCATCGCCATGAAGTACCCG
CACTACGGCTTCCCATGGCTCATGGAACATGTGGTGCTCAACTTCTCGTC
ATGCGTTCCTACTCCCATTTACAACTTTATCATGTCAAAGGTAAATGTGT
ACCCGTGA
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Coding sequence (CDS) from alignment at tig00000213_pilon:99504..100361-

>Ggra9984.t1 ID=Ggra9984.t1|Name=Ggra9984.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=858bp|location=Sequence derived from alignment at tig00000213_pilon:99504..100361- (Gracilaria gracilis GNS1m male)
ATGTTTGTGCTCGTCGCGCTGCTGAGCGCCGCCGCCGCGCTGCTCGCCGC
CGCCGCCGCGCACGCGCTGCACCGCCGGCGCGTCGCGCGCGCGCTGGCGT
CGCTGCGCGGCAAGCACGTGTGGGTGGTGGGCGCGTCGCGCGGCATCGGC
CGCGCCGTCGCGCTGCATGTGGCGTCGCTGGGCGCCACCGTCAGCGTGTC
GTCGCGCGCGTCGCCCGCGCTGCAGCGGCTGGCCGAGCAGCTGGGGCCGT
CGCTGCGCGCCGCCGTGCCGCTGGACGTCACCGACGTGCACGCCGTGTCC
GCCGCGGCGCAGCGCGTGTTCAACGCGGCGCCTGTGGACGTCGTGCTCGC
CAACGCTGGTGTCAATCACCAGAATAAGCCCTTCTCCATGCTGCACGCGC
GCCAGATTGACTGCGTGCTGGATACTAACCTCAGGTCTGTGGCGCACCTT
TTCTCGCGAGTGCTGCCGTCGCTCCTCCAACGCGGCGGCGTGCTCTGCGC
TGTGTCGTCGCTCTCCGCCTACAGGGGCGTCAGCGGCGCCTCTGTGTACG
CCGCTACTAAAGCTGCGCTCACCTCTTTGTGTCAGTCCCTCAATGTAGAG
CTTTACAACTCCAACGTTTCTGTCGTCTGCGTGCACCCTGGCTTTGTCGA
CACAACTGCCATCGCCAATCTGAAAAACCCAAAGCCGTTCCTCATCACAG
AGCATCAGGCCGCCGTCCATATCGTTGAGGCCATCGCCATGAAGTACCCG
CACTACGGCTTCCCATGGCTCATGGAACATGTGGTGCTCAACTTCTCGTC
ATGCGTTCCTACTCCCATTTACAACTTTATCATGTCAAAGGTAAATGTGT
ACCCGTGA
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