Ggra9980.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9980.t1
Unique NameGgra9980.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length454
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000213_piloncontigtig00000213_pilon:92130..93491 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog78898.MVEG_02854T0
Preferred nameGDA1
PFAMsGDA1_CD39
Max annot lvl4751|Fungi
KEGG koko:K01526
GOsGO:0000139,GO:0003674,GO:0003824,GO:0004382,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0006464,GO:0006486,GO:0006487,GO:0006493,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009268,GO:0009272,GO:0009628,GO:0009987,GO:0010570,GO:0012505,GO:0016020,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017110,GO:0019538,GO:0030447,GO:0031090,GO:0031984,GO:0034645,GO:0036176,GO:0036177,GO:0036178,GO:0036187,GO:0036211,GO:0036244,GO:0040007,GO:0040008,GO:0042546,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0044085,GO:0044182,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0045134,GO:0050789,GO:0050896,GO:0051716,GO:0065007,GO:0070085,GO:0070784,GO:0071214,GO:0071467,GO:0071554,GO:0071704,GO:0071840,GO:0071852,GO:0098588,GO:0098791,GO:0104004,GO:1900428,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576
Evalue4.17e-55
EggNOG OGsCOG5371@1|root,KOG1385@2759|Eukaryota,38C6F@33154|Opisthokonta,3NV8S@4751|Fungi,1GT62@112252|Fungi incertae sedis
EC3.6.1.42
DescriptionGDA1/CD39 (nucleoside phosphatase) family
COG categoryF
BRITEko00000,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9980Ggra9980Gracilaria gracilis GNS1m malegenetig00000213_pilon 92130..93491 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9980.t1.stop1Ggra9980.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000213_pilon 92130..92132 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9980.t1.CDS1Ggra9980.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000213_pilon 92130..93491 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9980.t1.exon1Ggra9980.t1.exon1Gracilaria gracilis GNS1m maleexontig00000213_pilon 92130..93491 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9980.t1.start1Ggra9980.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000213_pilon 93489..93491 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9980.t1Ggra9980.t1Gracilaria gracilis GNS1m malepolypeptidetig00000213_pilon 92130..93491 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9980.t1 ID=Ggra9980.t1|Name=Ggra9980.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=454bp
MRRFQAPMSTKFAKTYEPVGRPSLYAQTSTQGRLLKIAAAAIVTILSLSA
LRSVFAPSDYVYGLMIDAGSTGSRIHTFKFQKNPATAKLNVLGEDFHAIK
PGLSAYKDSANDAALSLEPLIQRAKSRVPMSLQPGTPVVLRATAGLRMVG
DEVANTILQEVRKYLRTSGFRFDDDSWASILSGNEEGVYSWITVNYLLDR
EPSNTVGTLEMGGGSSQVAYVPRDKTLNSGSTNCSTSEENLDFKGKTLDL
YTTSHLGFGLQKGRATALNMFQEKNLLQDNPCLNAGGTVEVAIPFEEDKK
LTMTGTGDYNACRKLLDEQFMDPTMGHCSCDLCTYHGSAQPPPIPEYVAI
AFYRGRTVEIGLGTTLTVRDIRQKGEEICAMSVEEATAKYPEVPQGVATD
LCLDLAFITLHLEHGHGITEESGTTLMVMEKINDFELGWCLGAMQQTMAK
LGM*
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spliced messenger RNA

>Ggra9980.t1 ID=Ggra9980.t1|Name=Ggra9980.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1362bp|location=Sequence derived from alignment at tig00000213_pilon:92130..93491- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGTCGCTTTCAGGCTCCGATGAGTACCAAGTTCGCCAAGACGTACGA
GCCGGTCGGTCGGCCTTCTCTGTACGCCCAAACGTCGACGCAGGGTCGTC
TTCTAAAAATTGCCGCGGCGGCCATTGTTACCATTCTTTCACTTTCGGCG
CTGCGTTCCGTCTTTGCTCCATCCGACTACGTCTATGGACTGATGATTGA
TGCCGGCTCAACAGGCTCTCGAATTCATACCTTCAAGTTCCAGAAGAACC
CCGCTACTGCCAAGCTGAATGTTCTCGGCGAGGACTTCCATGCAATCAAA
CCGGGCTTGTCCGCGTATAAGGATAGTGCGAACGATGCTGCTCTTTCATT
GGAGCCACTCATTCAGCGTGCCAAGTCTCGCGTTCCAATGTCGCTGCAAC
CTGGCACGCCGGTTGTGTTGCGTGCTACTGCTGGGCTGAGAATGGTCGGT
GATGAAGTGGCAAATACAATTTTGCAAGAGGTGCGCAAGTATCTCAGGAC
CTCCGGCTTTCGATTCGACGATGACTCATGGGCATCTATTTTGTCCGGTA
ACGAGGAAGGAGTGTACTCCTGGATCACAGTCAACTACCTTCTAGATCGC
GAACCGTCCAATACTGTGGGCACACTTGAGATGGGTGGTGGCTCATCCCA
AGTCGCGTACGTTCCTAGAGACAAGACGCTTAACTCTGGGTCAACCAACT
GCTCCACCTCCGAAGAAAATCTTGACTTCAAGGGGAAAACACTTGATTTG
TATACTACTTCTCACCTTGGTTTTGGTTTACAAAAAGGTCGTGCCACTGC
GCTCAACATGTTCCAAGAGAAGAATTTGTTGCAGGACAATCCTTGCCTTA
ATGCGGGCGGTACTGTAGAAGTGGCAATTCCGTTCGAGGAAGACAAGAAG
CTCACGATGACTGGTACGGGTGATTACAATGCGTGCCGCAAACTCCTTGA
CGAGCAATTCATGGATCCAACGATGGGACATTGTTCATGTGATCTATGCA
CATATCATGGTTCGGCTCAACCACCACCAATTCCCGAATACGTTGCCATT
GCTTTCTATCGAGGGCGAACAGTAGAGATTGGCCTTGGCACAACGCTAAC
CGTGCGAGACATAAGGCAGAAGGGCGAAGAAATCTGTGCGATGAGCGTGG
AAGAGGCGACAGCTAAATATCCAGAGGTTCCACAAGGTGTTGCCACTGAT
CTCTGTTTGGACCTTGCCTTCATCACTCTCCATCTTGAACATGGTCATGG
CATTACCGAAGAGAGCGGTACCACCCTAATGGTTATGGAAAAGATCAACG
ATTTTGAATTAGGGTGGTGCCTTGGTGCCATGCAACAAACCATGGCCAAA
CTCGGAATGTGA
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protein sequence of Ggra9980.t1

>Ggra9980.t1 ID=Ggra9980.t1|Name=Ggra9980.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=454bp
MRRFQAPMSTKFAKTYEPVGRPSLYAQTSTQGRLLKIAAAAIVTILSLSA
LRSVFAPSDYVYGLMIDAGSTGSRIHTFKFQKNPATAKLNVLGEDFHAIK
PGLSAYKDSANDAALSLEPLIQRAKSRVPMSLQPGTPVVLRATAGLRMVG
DEVANTILQEVRKYLRTSGFRFDDDSWASILSGNEEGVYSWITVNYLLDR
EPSNTVGTLEMGGGSSQVAYVPRDKTLNSGSTNCSTSEENLDFKGKTLDL
YTTSHLGFGLQKGRATALNMFQEKNLLQDNPCLNAGGTVEVAIPFEEDKK
LTMTGTGDYNACRKLLDEQFMDPTMGHCSCDLCTYHGSAQPPPIPEYVAI
AFYRGRTVEIGLGTTLTVRDIRQKGEEICAMSVEEATAKYPEVPQGVATD
LCLDLAFITLHLEHGHGITEESGTTLMVMEKINDFELGWCLGAMQQTMAK
LGM*
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mRNA from alignment at tig00000213_pilon:92130..93491-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9980.t1 ID=Ggra9980.t1|Name=Ggra9980.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1362bp|location=Sequence derived from alignment at tig00000213_pilon:92130..93491- (Gracilaria gracilis GNS1m male)
ATGCGTCGCTTTCAGGCTCCGATGAGTACCAAGTTCGCCAAGACGTACGA
GCCGGTCGGTCGGCCTTCTCTGTACGCCCAAACGTCGACGCAGGGTCGTC
TTCTAAAAATTGCCGCGGCGGCCATTGTTACCATTCTTTCACTTTCGGCG
CTGCGTTCCGTCTTTGCTCCATCCGACTACGTCTATGGACTGATGATTGA
TGCCGGCTCAACAGGCTCTCGAATTCATACCTTCAAGTTCCAGAAGAACC
CCGCTACTGCCAAGCTGAATGTTCTCGGCGAGGACTTCCATGCAATCAAA
CCGGGCTTGTCCGCGTATAAGGATAGTGCGAACGATGCTGCTCTTTCATT
GGAGCCACTCATTCAGCGTGCCAAGTCTCGCGTTCCAATGTCGCTGCAAC
CTGGCACGCCGGTTGTGTTGCGTGCTACTGCTGGGCTGAGAATGGTCGGT
GATGAAGTGGCAAATACAATTTTGCAAGAGGTGCGCAAGTATCTCAGGAC
CTCCGGCTTTCGATTCGACGATGACTCATGGGCATCTATTTTGTCCGGTA
ACGAGGAAGGAGTGTACTCCTGGATCACAGTCAACTACCTTCTAGATCGC
GAACCGTCCAATACTGTGGGCACACTTGAGATGGGTGGTGGCTCATCCCA
AGTCGCGTACGTTCCTAGAGACAAGACGCTTAACTCTGGGTCAACCAACT
GCTCCACCTCCGAAGAAAATCTTGACTTCAAGGGGAAAACACTTGATTTG
TATACTACTTCTCACCTTGGTTTTGGTTTACAAAAAGGTCGTGCCACTGC
GCTCAACATGTTCCAAGAGAAGAATTTGTTGCAGGACAATCCTTGCCTTA
ATGCGGGCGGTACTGTAGAAGTGGCAATTCCGTTCGAGGAAGACAAGAAG
CTCACGATGACTGGTACGGGTGATTACAATGCGTGCCGCAAACTCCTTGA
CGAGCAATTCATGGATCCAACGATGGGACATTGTTCATGTGATCTATGCA
CATATCATGGTTCGGCTCAACCACCACCAATTCCCGAATACGTTGCCATT
GCTTTCTATCGAGGGCGAACAGTAGAGATTGGCCTTGGCACAACGCTAAC
CGTGCGAGACATAAGGCAGAAGGGCGAAGAAATCTGTGCGATGAGCGTGG
AAGAGGCGACAGCTAAATATCCAGAGGTTCCACAAGGTGTTGCCACTGAT
CTCTGTTTGGACCTTGCCTTCATCACTCTCCATCTTGAACATGGTCATGG
CATTACCGAAGAGAGCGGTACCACCCTAATGGTTATGGAAAAGATCAACG
ATTTTGAATTAGGGTGGTGCCTTGGTGCCATGCAACAAACCATGGCCAAA
CTCGGAATGTGA
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Coding sequence (CDS) from alignment at tig00000213_pilon:92130..93491-

>Ggra9980.t1 ID=Ggra9980.t1|Name=Ggra9980.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1362bp|location=Sequence derived from alignment at tig00000213_pilon:92130..93491- (Gracilaria gracilis GNS1m male)
ATGCGTCGCTTTCAGGCTCCGATGAGTACCAAGTTCGCCAAGACGTACGA
GCCGGTCGGTCGGCCTTCTCTGTACGCCCAAACGTCGACGCAGGGTCGTC
TTCTAAAAATTGCCGCGGCGGCCATTGTTACCATTCTTTCACTTTCGGCG
CTGCGTTCCGTCTTTGCTCCATCCGACTACGTCTATGGACTGATGATTGA
TGCCGGCTCAACAGGCTCTCGAATTCATACCTTCAAGTTCCAGAAGAACC
CCGCTACTGCCAAGCTGAATGTTCTCGGCGAGGACTTCCATGCAATCAAA
CCGGGCTTGTCCGCGTATAAGGATAGTGCGAACGATGCTGCTCTTTCATT
GGAGCCACTCATTCAGCGTGCCAAGTCTCGCGTTCCAATGTCGCTGCAAC
CTGGCACGCCGGTTGTGTTGCGTGCTACTGCTGGGCTGAGAATGGTCGGT
GATGAAGTGGCAAATACAATTTTGCAAGAGGTGCGCAAGTATCTCAGGAC
CTCCGGCTTTCGATTCGACGATGACTCATGGGCATCTATTTTGTCCGGTA
ACGAGGAAGGAGTGTACTCCTGGATCACAGTCAACTACCTTCTAGATCGC
GAACCGTCCAATACTGTGGGCACACTTGAGATGGGTGGTGGCTCATCCCA
AGTCGCGTACGTTCCTAGAGACAAGACGCTTAACTCTGGGTCAACCAACT
GCTCCACCTCCGAAGAAAATCTTGACTTCAAGGGGAAAACACTTGATTTG
TATACTACTTCTCACCTTGGTTTTGGTTTACAAAAAGGTCGTGCCACTGC
GCTCAACATGTTCCAAGAGAAGAATTTGTTGCAGGACAATCCTTGCCTTA
ATGCGGGCGGTACTGTAGAAGTGGCAATTCCGTTCGAGGAAGACAAGAAG
CTCACGATGACTGGTACGGGTGATTACAATGCGTGCCGCAAACTCCTTGA
CGAGCAATTCATGGATCCAACGATGGGACATTGTTCATGTGATCTATGCA
CATATCATGGTTCGGCTCAACCACCACCAATTCCCGAATACGTTGCCATT
GCTTTCTATCGAGGGCGAACAGTAGAGATTGGCCTTGGCACAACGCTAAC
CGTGCGAGACATAAGGCAGAAGGGCGAAGAAATCTGTGCGATGAGCGTGG
AAGAGGCGACAGCTAAATATCCAGAGGTTCCACAAGGTGTTGCCACTGAT
CTCTGTTTGGACCTTGCCTTCATCACTCTCCATCTTGAACATGGTCATGG
CATTACCGAAGAGAGCGGTACCACCCTAATGGTTATGGAAAAGATCAACG
ATTTTGAATTAGGGTGGTGCCTTGGTGCCATGCAACAAACCATGGCCAAA
CTCGGAATGTGA
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