Ggra9975.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9975.t1
Unique NameGgra9975.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length220
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000213_piloncontigtig00000213_pilon:79749..80494 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9975Ggra9975Gracilaria gracilis GNS1m malegenetig00000213_pilon 79749..80494 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9975.t1Ggra9975.t1Gracilaria gracilis GNS1m malepolypeptidetig00000213_pilon 79749..80494 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9975.t1.stop1Ggra9975.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000213_pilon 79749..79751 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9975.t1.CDS1Ggra9975.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000213_pilon 79749..79759 -
Ggra9975.t1.CDS2Ggra9975.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000213_pilon 79846..80494 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9975.t1.exon1Ggra9975.t1.exon1Gracilaria gracilis GNS1m maleexontig00000213_pilon 79749..79759 -
Ggra9975.t1.exon2Ggra9975.t1.exon2Gracilaria gracilis GNS1m maleexontig00000213_pilon 79846..80494 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9975.t1.intron1Ggra9975.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000213_pilon 79760..79845 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9975.t1.start1Ggra9975.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000213_pilon 80492..80494 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9975.t1 ID=Ggra9975.t1|Name=Ggra9975.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=220bp
MARAPAAAALLRFSELLSSQNDRSLPYPVLKRLLRALRQYHPSYAAPRAA
AAAAALSQTQPPPLSQTQTQTLRRVEPPSPPSASPPPPSAPSAPPPPPPP
PLPPQARALKRRKRRHSRRAPLPAAAARRQQSSAPPANARRAGQVGQHVN
AVLCQLTRDAHGGEHVSWGQLRRALLQAASGYRPFCAALDELFGRGEPVA
LCESAQSSQRSKSSASSRW*
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spliced messenger RNA

>Ggra9975.t1 ID=Ggra9975.t1|Name=Ggra9975.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=660bp|location=Sequence derived from alignment at tig00000213_pilon:79749..80494- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCGCGCGCCCGCCGCCGCCGCGCTGCTGCGCTTCTCCGAGCTGCT
GTCGTCGCAGAACGACCGCTCGCTGCCGTACCCCGTGCTCAAGCGCCTGC
TGCGCGCGCTGCGCCAGTACCACCCGTCCTACGCCGCGCCGCGCGCCGCC
GCCGCAGCCGCCGCGCTCTCGCAGACGCAGCCGCCGCCGCTCTCGCAGAC
GCAGACGCAGACGCTGCGCCGCGTCGAGCCGCCTTCGCCGCCGTCCGCGT
CGCCGCCGCCGCCGTCCGCGCCGTCCGCGCCGCCGCCGCCGCCGCCGCCG
CCGCTGCCGCCGCAAGCGCGCGCTCTCAAGCGACGCAAGCGGCGCCACAG
CAGACGCGCGCCGCTGCCGGCCGCCGCGGCGCGGCGCCAGCAATCATCGG
CGCCGCCAGCCAACGCGCGCCGCGCCGGGCAGGTGGGGCAGCACGTGAAC
GCCGTGCTGTGCCAGCTCACTCGCGACGCGCACGGCGGCGAGCACGTCAG
CTGGGGCCAGCTTCGACGCGCGCTGCTGCAGGCCGCTTCGGGGTACCGCC
CGTTTTGCGCGGCGCTGGATGAGCTGTTTGGGCGCGGCGAGCCCGTGGCG
TTGTGTGAAAGCGCGCAGAGTAGCCAGCGCTCCAAGTCGTCCGCCAGCTC
GCGTTGGTGA
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protein sequence of Ggra9975.t1

>Ggra9975.t1 ID=Ggra9975.t1|Name=Ggra9975.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=220bp
MARAPAAAALLRFSELLSSQNDRSLPYPVLKRLLRALRQYHPSYAAPRAA
AAAAALSQTQPPPLSQTQTQTLRRVEPPSPPSASPPPPSAPSAPPPPPPP
PLPPQARALKRRKRRHSRRAPLPAAAARRQQSSAPPANARRAGQVGQHVN
AVLCQLTRDAHGGEHVSWGQLRRALLQAASGYRPFCAALDELFGRGEPVA
LCESAQSSQRSKSSASSRW*
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mRNA from alignment at tig00000213_pilon:79749..80494-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9975.t1 ID=Ggra9975.t1|Name=Ggra9975.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=746bp|location=Sequence derived from alignment at tig00000213_pilon:79749..80494- (Gracilaria gracilis GNS1m male)
ATGGCGCGCGCGCCCGCCGCCGCCGCGCTGCTGCGCTTCTCCGAGCTGCT
GTCGTCGCAGAACGACCGCTCGCTGCCGTACCCCGTGCTCAAGCGCCTGC
TGCGCGCGCTGCGCCAGTACCACCCGTCCTACGCCGCGCCGCGCGCCGCC
GCCGCAGCCGCCGCGCTCTCGCAGACGCAGCCGCCGCCGCTCTCGCAGAC
GCAGACGCAGACGCTGCGCCGCGTCGAGCCGCCTTCGCCGCCGTCCGCGT
CGCCGCCGCCGCCGTCCGCGCCGTCCGCGCCGCCGCCGCCGCCGCCGCCG
CCGCTGCCGCCGCAAGCGCGCGCTCTCAAGCGACGCAAGCGGCGCCACAG
CAGACGCGCGCCGCTGCCGGCCGCCGCGGCGCGGCGCCAGCAATCATCGG
CGCCGCCAGCCAACGCGCGCCGCGCCGGGCAGGTGGGGCAGCACGTGAAC
GCCGTGCTGTGCCAGCTCACTCGCGACGCGCACGGCGGCGAGCACGTCAG
CTGGGGCCAGCTTCGACGCGCGCTGCTGCAGGCCGCTTCGGGGTACCGCC
CGTTTTGCGCGGCGCTGGATGAGCTGTTTGGGCGCGGCGAGCCCGTGGCG
TTGTGTGAAAGCGCGCAGAGTAGCCAGCGCTCCAAGTCGTCCGCCAGCTG
TATGTTTTACTCCAACGCGTTTTGGGACGACGTTTGGCGCGATTACCTCG
CCTCTCAGCAGCGCACTGATTCGTGATTATCACAGCGCGTTGGTGA
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Coding sequence (CDS) from alignment at tig00000213_pilon:79749..80494-

>Ggra9975.t1 ID=Ggra9975.t1|Name=Ggra9975.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=660bp|location=Sequence derived from alignment at tig00000213_pilon:79749..80494- (Gracilaria gracilis GNS1m male)
ATGGCGCGCGCGCCCGCCGCCGCCGCGCTGCTGCGCTTCTCCGAGCTGCT
GTCGTCGCAGAACGACCGCTCGCTGCCGTACCCCGTGCTCAAGCGCCTGC
TGCGCGCGCTGCGCCAGTACCACCCGTCCTACGCCGCGCCGCGCGCCGCC
GCCGCAGCCGCCGCGCTCTCGCAGACGCAGCCGCCGCCGCTCTCGCAGAC
GCAGACGCAGACGCTGCGCCGCGTCGAGCCGCCTTCGCCGCCGTCCGCGT
CGCCGCCGCCGCCGTCCGCGCCGTCCGCGCCGCCGCCGCCGCCGCCGCCG
CCGCTGCCGCCGCAAGCGCGCGCTCTCAAGCGACGCAAGCGGCGCCACAG
CAGACGCGCGCCGCTGCCGGCCGCCGCGGCGCGGCGCCAGCAATCATCGG
CGCCGCCAGCCAACGCGCGCCGCGCCGGGCAGGTGGGGCAGCACGTGAAC
GCCGTGCTGTGCCAGCTCACTCGCGACGCGCACGGCGGCGAGCACGTCAG
CTGGGGCCAGCTTCGACGCGCGCTGCTGCAGGCCGCTTCGGGGTACCGCC
CGTTTTGCGCGGCGCTGGATGAGCTGTTTGGGCGCGGCGAGCCCGTGGCG
TTGTGTGAAAGCGCGCAGAGTAGCCAGCGCTCCAAGTCGTCCGCCAGCTC
GCGTTGGTGA
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