Ggra9973.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9973.t1
Unique NameGgra9973.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length268
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000213_piloncontigtig00000213_pilon:75872..76675 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog112098.XP_008612531.1
Preferred nameTMX2
PFAMsThioredoxin
Max annot lvl2759|Eukaryota
KEGG koko:K20030
Evalue9.99e-31
EggNOG OGsKOG0914@1|root,KOG0914@2759|Eukaryota
EC2.3.1.225
Descriptionthioredoxin-related transmembrane protein
COG categoryS
BRITEko00000,ko01000,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9973Ggra9973Gracilaria gracilis GNS1m malegenetig00000213_pilon 75872..76675 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9973.t1.start1Ggra9973.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000213_pilon 75872..75874 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9973.t1.CDS1Ggra9973.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000213_pilon 75872..76675 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9973.t1.exon1Ggra9973.t1.exon1Gracilaria gracilis GNS1m maleexontig00000213_pilon 75872..76675 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9973.t1.stop1Ggra9973.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000213_pilon 76673..76675 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9973.t1Ggra9973.t1Gracilaria gracilis GNS1m malepolypeptidetig00000213_pilon 75872..76675 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9973.t1 ID=Ggra9973.t1|Name=Ggra9973.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=268bp
MVPARFLHPYYVLNGALVLAYVGLRVKRLDARELQATDMFGITREAQIYF
CVALMLLTRALSAPTLDAYLSSAFMFLRVAIVTLLFFMDTQLVAVFLALW
VMIYAVCPQPRFKLPKSIITLNNVSYNERIARNTHKSVYVLWCHATWSAR
CSQLVPLLASLANAYNHPRIRFARVDVSKFPALADTLSVSVSPASKQLPT
VICYKQGKEVARIPRMDARGNLPSKWSRGFTAAHVAEALDLNTHFATAKQ
WEEQARQKYRQDRKKTN*
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spliced messenger RNA

>Ggra9973.t1 ID=Ggra9973.t1|Name=Ggra9973.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=804bp|location=Sequence derived from alignment at tig00000213_pilon:75872..76675+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGCCCGCGCGCTTCCTCCACCCGTACTACGTGCTCAACGGCGCGCT
GGTGCTGGCGTACGTCGGGCTGCGCGTCAAGCGCCTCGACGCGCGCGAGC
TGCAGGCCACCGACATGTTCGGCATCACACGCGAGGCGCAGATCTACTTT
TGCGTCGCGCTCATGCTGCTCACGCGCGCCTTGTCCGCGCCCACGCTGGA
CGCCTACCTCTCGTCCGCCTTCATGTTCCTGCGCGTCGCCATCGTCACGC
TGCTCTTCTTCATGGACACGCAGCTGGTGGCCGTCTTCCTCGCGCTGTGG
GTCATGATCTACGCCGTGTGTCCGCAGCCGCGCTTCAAGCTGCCAAAATC
CATCATCACGCTGAACAACGTCTCGTACAATGAGCGCATTGCGCGTAACA
CGCACAAGAGCGTGTACGTGCTGTGGTGCCACGCTACGTGGTCCGCGCGC
TGCTCGCAGCTTGTGCCGCTGCTGGCGTCGCTGGCCAACGCGTACAATCA
CCCGCGTATACGCTTTGCGCGCGTGGACGTGTCCAAGTTCCCGGCGCTGG
CCGACACGCTGTCGGTGTCGGTGTCGCCTGCGTCCAAGCAGCTGCCCACC
GTCATTTGCTACAAGCAGGGAAAGGAGGTTGCGCGAATTCCGCGCATGGA
CGCGCGCGGCAACCTGCCCTCCAAGTGGTCCAGAGGCTTCACTGCCGCCC
ATGTGGCAGAGGCGCTTGACTTGAATACCCACTTTGCTACCGCCAAGCAA
TGGGAGGAGCAGGCGCGTCAAAAGTATCGTCAAGACCGCAAGAAGACCAA
CTGA
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protein sequence of Ggra9973.t1

>Ggra9973.t1 ID=Ggra9973.t1|Name=Ggra9973.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=268bp
MVPARFLHPYYVLNGALVLAYVGLRVKRLDARELQATDMFGITREAQIYF
CVALMLLTRALSAPTLDAYLSSAFMFLRVAIVTLLFFMDTQLVAVFLALW
VMIYAVCPQPRFKLPKSIITLNNVSYNERIARNTHKSVYVLWCHATWSAR
CSQLVPLLASLANAYNHPRIRFARVDVSKFPALADTLSVSVSPASKQLPT
VICYKQGKEVARIPRMDARGNLPSKWSRGFTAAHVAEALDLNTHFATAKQ
WEEQARQKYRQDRKKTN*
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mRNA from alignment at tig00000213_pilon:75872..76675+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9973.t1 ID=Ggra9973.t1|Name=Ggra9973.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=804bp|location=Sequence derived from alignment at tig00000213_pilon:75872..76675+ (Gracilaria gracilis GNS1m male)
ATGGTGCCCGCGCGCTTCCTCCACCCGTACTACGTGCTCAACGGCGCGCT
GGTGCTGGCGTACGTCGGGCTGCGCGTCAAGCGCCTCGACGCGCGCGAGC
TGCAGGCCACCGACATGTTCGGCATCACACGCGAGGCGCAGATCTACTTT
TGCGTCGCGCTCATGCTGCTCACGCGCGCCTTGTCCGCGCCCACGCTGGA
CGCCTACCTCTCGTCCGCCTTCATGTTCCTGCGCGTCGCCATCGTCACGC
TGCTCTTCTTCATGGACACGCAGCTGGTGGCCGTCTTCCTCGCGCTGTGG
GTCATGATCTACGCCGTGTGTCCGCAGCCGCGCTTCAAGCTGCCAAAATC
CATCATCACGCTGAACAACGTCTCGTACAATGAGCGCATTGCGCGTAACA
CGCACAAGAGCGTGTACGTGCTGTGGTGCCACGCTACGTGGTCCGCGCGC
TGCTCGCAGCTTGTGCCGCTGCTGGCGTCGCTGGCCAACGCGTACAATCA
CCCGCGTATACGCTTTGCGCGCGTGGACGTGTCCAAGTTCCCGGCGCTGG
CCGACACGCTGTCGGTGTCGGTGTCGCCTGCGTCCAAGCAGCTGCCCACC
GTCATTTGCTACAAGCAGGGAAAGGAGGTTGCGCGAATTCCGCGCATGGA
CGCGCGCGGCAACCTGCCCTCCAAGTGGTCCAGAGGCTTCACTGCCGCCC
ATGTGGCAGAGGCGCTTGACTTGAATACCCACTTTGCTACCGCCAAGCAA
TGGGAGGAGCAGGCGCGTCAAAAGTATCGTCAAGACCGCAAGAAGACCAA
CTGA
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Coding sequence (CDS) from alignment at tig00000213_pilon:75872..76675+

>Ggra9973.t1 ID=Ggra9973.t1|Name=Ggra9973.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=804bp|location=Sequence derived from alignment at tig00000213_pilon:75872..76675+ (Gracilaria gracilis GNS1m male)
ATGGTGCCCGCGCGCTTCCTCCACCCGTACTACGTGCTCAACGGCGCGCT
GGTGCTGGCGTACGTCGGGCTGCGCGTCAAGCGCCTCGACGCGCGCGAGC
TGCAGGCCACCGACATGTTCGGCATCACACGCGAGGCGCAGATCTACTTT
TGCGTCGCGCTCATGCTGCTCACGCGCGCCTTGTCCGCGCCCACGCTGGA
CGCCTACCTCTCGTCCGCCTTCATGTTCCTGCGCGTCGCCATCGTCACGC
TGCTCTTCTTCATGGACACGCAGCTGGTGGCCGTCTTCCTCGCGCTGTGG
GTCATGATCTACGCCGTGTGTCCGCAGCCGCGCTTCAAGCTGCCAAAATC
CATCATCACGCTGAACAACGTCTCGTACAATGAGCGCATTGCGCGTAACA
CGCACAAGAGCGTGTACGTGCTGTGGTGCCACGCTACGTGGTCCGCGCGC
TGCTCGCAGCTTGTGCCGCTGCTGGCGTCGCTGGCCAACGCGTACAATCA
CCCGCGTATACGCTTTGCGCGCGTGGACGTGTCCAAGTTCCCGGCGCTGG
CCGACACGCTGTCGGTGTCGGTGTCGCCTGCGTCCAAGCAGCTGCCCACC
GTCATTTGCTACAAGCAGGGAAAGGAGGTTGCGCGAATTCCGCGCATGGA
CGCGCGCGGCAACCTGCCCTCCAAGTGGTCCAGAGGCTTCACTGCCGCCC
ATGTGGCAGAGGCGCTTGACTTGAATACCCACTTTGCTACCGCCAAGCAA
TGGGAGGAGCAGGCGCGTCAAAAGTATCGTCAAGACCGCAAGAAGACCAA
CTGA
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