Ggra9972.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9972.t1
Unique NameGgra9972.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length200
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000213_piloncontigtig00000213_pilon:74879..75478 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3055.EDO99784
PFAMsHAD_2
Max annot lvl3041|Chlorophyta
Evalue2.91e-48
EggNOG OGsCOG0637@1|root,KOG2914@2759|Eukaryota,37PX8@33090|Viridiplantae,34JGN@3041|Chlorophyta
DescriptionHAD-hyrolase-like
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9972Ggra9972Gracilaria gracilis GNS1m malegenetig00000213_pilon 74879..75478 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9972.t1.start1Ggra9972.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000213_pilon 74879..74881 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9972.t1.CDS1Ggra9972.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000213_pilon 74879..75478 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9972.t1.exon1Ggra9972.t1.exon1Gracilaria gracilis GNS1m maleexontig00000213_pilon 74879..75478 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9972.t1.stop1Ggra9972.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000213_pilon 75476..75478 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9972.t1Ggra9972.t1Gracilaria gracilis GNS1m malepolypeptidetig00000213_pilon 74879..75478 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9972.t1 ID=Ggra9972.t1|Name=Ggra9972.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=200bp
MRWYFDNYGWPTDYAQRDGDDAALQTRRTALIKRLHEQKTALYKALVEGG
QAAVRPGVLRLIDEAHARGVKLAVCSAANADAIELVLRRLVGQPRLRYFD
VVLAGDVVSRKKPHPMIYQLAQQRLRVAADRCVVIEDSHIGLRAALDAGM
NVVITHTPYTEKQRFDGAAAVYAGLGEPGRDAPCDVVTVDTLFPMLAAT*
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spliced messenger RNA

>Ggra9972.t1 ID=Ggra9972.t1|Name=Ggra9972.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=600bp|location=Sequence derived from alignment at tig00000213_pilon:74879..75478+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCTGGTACTTTGACAACTACGGCTGGCCGACCGACTACGCGCAGCG
CGACGGTGACGACGCCGCGCTGCAGACGCGCCGAACCGCGCTCATCAAAC
GACTGCATGAGCAGAAGACCGCGCTGTACAAGGCGCTCGTGGAGGGCGGA
CAGGCCGCAGTGCGCCCCGGCGTGCTGCGCCTCATCGACGAGGCGCACGC
GCGCGGCGTCAAGCTGGCAGTGTGCTCGGCCGCCAACGCGGACGCCATCG
AGCTGGTGCTGCGCCGGCTGGTGGGGCAGCCGCGTCTGCGCTACTTTGAC
GTGGTGCTGGCCGGCGACGTGGTCAGCCGCAAGAAGCCGCACCCCATGAT
CTATCAGCTGGCGCAACAGCGGCTGCGCGTGGCCGCTGACCGCTGCGTCG
TCATCGAGGACAGCCACATCGGCCTGCGCGCCGCGCTGGACGCCGGCATG
AACGTCGTCATCACGCATACGCCCTACACCGAGAAGCAGCGCTTTGACGG
CGCGGCCGCCGTGTACGCCGGGCTGGGCGAGCCCGGGCGCGACGCGCCGT
GCGACGTCGTCACCGTCGATACGCTCTTCCCGATGCTCGCCGCTACGTAA
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protein sequence of Ggra9972.t1

>Ggra9972.t1 ID=Ggra9972.t1|Name=Ggra9972.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=200bp
MRWYFDNYGWPTDYAQRDGDDAALQTRRTALIKRLHEQKTALYKALVEGG
QAAVRPGVLRLIDEAHARGVKLAVCSAANADAIELVLRRLVGQPRLRYFD
VVLAGDVVSRKKPHPMIYQLAQQRLRVAADRCVVIEDSHIGLRAALDAGM
NVVITHTPYTEKQRFDGAAAVYAGLGEPGRDAPCDVVTVDTLFPMLAAT*
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mRNA from alignment at tig00000213_pilon:74879..75478+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9972.t1 ID=Ggra9972.t1|Name=Ggra9972.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=600bp|location=Sequence derived from alignment at tig00000213_pilon:74879..75478+ (Gracilaria gracilis GNS1m male)
ATGCGCTGGTACTTTGACAACTACGGCTGGCCGACCGACTACGCGCAGCG
CGACGGTGACGACGCCGCGCTGCAGACGCGCCGAACCGCGCTCATCAAAC
GACTGCATGAGCAGAAGACCGCGCTGTACAAGGCGCTCGTGGAGGGCGGA
CAGGCCGCAGTGCGCCCCGGCGTGCTGCGCCTCATCGACGAGGCGCACGC
GCGCGGCGTCAAGCTGGCAGTGTGCTCGGCCGCCAACGCGGACGCCATCG
AGCTGGTGCTGCGCCGGCTGGTGGGGCAGCCGCGTCTGCGCTACTTTGAC
GTGGTGCTGGCCGGCGACGTGGTCAGCCGCAAGAAGCCGCACCCCATGAT
CTATCAGCTGGCGCAACAGCGGCTGCGCGTGGCCGCTGACCGCTGCGTCG
TCATCGAGGACAGCCACATCGGCCTGCGCGCCGCGCTGGACGCCGGCATG
AACGTCGTCATCACGCATACGCCCTACACCGAGAAGCAGCGCTTTGACGG
CGCGGCCGCCGTGTACGCCGGGCTGGGCGAGCCCGGGCGCGACGCGCCGT
GCGACGTCGTCACCGTCGATACGCTCTTCCCGATGCTCGCCGCTACGTAA
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Coding sequence (CDS) from alignment at tig00000213_pilon:74879..75478+

>Ggra9972.t1 ID=Ggra9972.t1|Name=Ggra9972.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=600bp|location=Sequence derived from alignment at tig00000213_pilon:74879..75478+ (Gracilaria gracilis GNS1m male)
ATGCGCTGGTACTTTGACAACTACGGCTGGCCGACCGACTACGCGCAGCG
CGACGGTGACGACGCCGCGCTGCAGACGCGCCGAACCGCGCTCATCAAAC
GACTGCATGAGCAGAAGACCGCGCTGTACAAGGCGCTCGTGGAGGGCGGA
CAGGCCGCAGTGCGCCCCGGCGTGCTGCGCCTCATCGACGAGGCGCACGC
GCGCGGCGTCAAGCTGGCAGTGTGCTCGGCCGCCAACGCGGACGCCATCG
AGCTGGTGCTGCGCCGGCTGGTGGGGCAGCCGCGTCTGCGCTACTTTGAC
GTGGTGCTGGCCGGCGACGTGGTCAGCCGCAAGAAGCCGCACCCCATGAT
CTATCAGCTGGCGCAACAGCGGCTGCGCGTGGCCGCTGACCGCTGCGTCG
TCATCGAGGACAGCCACATCGGCCTGCGCGCCGCGCTGGACGCCGGCATG
AACGTCGTCATCACGCATACGCCCTACACCGAGAAGCAGCGCTTTGACGG
CGCGGCCGCCGTGTACGCCGGGCTGGGCGAGCCCGGGCGCGACGCGCCGT
GCGACGTCGTCACCGTCGATACGCTCTTCCCGATGCTCGCCGCTACGTAA
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