Ggra9967.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9967.t1
Unique NameGgra9967.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length342
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000882_piloncontigtig00000882_pilon:97950..98975 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9967Ggra9967Gracilaria gracilis GNS1m malegenetig00000882_pilon 97950..98975 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9967.t1.stop1Ggra9967.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000882_pilon 97950..97952 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9967.t1.CDS1Ggra9967.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000882_pilon 97950..98975 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9967.t1.exon1Ggra9967.t1.exon1Gracilaria gracilis GNS1m maleexontig00000882_pilon 97950..98975 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9967.t1.start1Ggra9967.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000882_pilon 98973..98975 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9967.t1Ggra9967.t1Gracilaria gracilis GNS1m malepolypeptidetig00000882_pilon 97950..98975 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9967.t1 ID=Ggra9967.t1|Name=Ggra9967.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=342bp
MNSGIIRTVGATRRGVIPSISDCSLSTPIHTGSPYKAAAPEQLALQPPSH
TTFPQLIPPYYHTKPQTTTLPHPNPISHYTTHQSPTQPHFNPPQDPSHFP
TPQKHPAHFPTPSYLYNPSLRPTTTRYPRSTTQLPRYHPPLLVTPAPLMN
SVVTVLLQLHLYALSSRTVFSSGTSLYNDKDDKQLGAEANDLLQVLLWFS
DVVKGTCDQIRPFWAKHSNPLPRGIEKLKGDLLLNRVVEYGLEADQKYRH
AQAVAEIFLRGLGEPKAVDEATFEMLREADVEQCSDCRDVCRVPGEGSGT
DCERSAGRFAVACACHFLQHEGHTPTPGAGGRPCSAATSWR*
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spliced messenger RNA

>Ggra9967.t1 ID=Ggra9967.t1|Name=Ggra9967.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1026bp|location=Sequence derived from alignment at tig00000882_pilon:97950..98975- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATTCTGGCATCATCCGCACCGTGGGAGCAACCAGGAGAGGGGTGAT
CCCCTCAATTTCCGATTGCTCATTGTCAACACCGATCCACACTGGTTCGC
CGTACAAGGCGGCCGCACCTGAACAACTTGCTTTACAACCGCCCTCGCAC
ACCACATTTCCCCAACTTATCCCACCCTACTACCACACCAAACCTCAGAC
TACTACCCTACCTCACCCTAACCCAATTTCCCATTATACCACACATCAAT
CCCCCACCCAACCCCACTTCAATCCACCACAAGACCCCAGCCACTTCCCT
ACCCCCCAAAAGCACCCAGCCCACTTTCCTACTCCCTCATACCTCTACAA
TCCCTCACTACGCCCCACCACTACTCGTTACCCCCGCTCCACAACCCAAC
TGCCTCGCTACCACCCACCACTACTCGTTACTCCCGCTCCCCTAATGAAT
TCCGTCGTGACGGTGTTGCTACAACTTCACCTGTACGCATTGTCGTCGCG
CACAGTGTTCTCGAGCGGCACATCGTTGTACAACGACAAGGATGATAAGC
AGCTGGGTGCAGAAGCAAATGACCTGCTGCAGGTGTTGCTCTGGTTCAGC
GATGTGGTCAAAGGTACCTGCGATCAGATTCGGCCCTTTTGGGCGAAACA
TTCAAATCCATTGCCTCGCGGCATTGAAAAGTTGAAGGGCGATCTCCTAC
TGAATCGCGTTGTAGAGTACGGTCTTGAAGCGGACCAGAAGTACAGGCAC
GCGCAGGCCGTCGCCGAGATCTTCCTGAGGGGGCTCGGGGAACCAAAAGC
GGTGGACGAAGCCACATTTGAAATGCTGCGGGAAGCTGATGTCGAGCAGT
GCAGCGATTGCCGGGATGTGTGTCGCGTGCCTGGCGAAGGAAGCGGCACG
GACTGCGAAAGAAGCGCAGGACGGTTTGCAGTTGCTTGTGCGTGCCATTT
CCTGCAGCACGAAGGCCATACACCGACGCCAGGTGCGGGAGGACGACCAT
GCTCCGCGGCGACCAGCTGGAGGTAG
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protein sequence of Ggra9967.t1

>Ggra9967.t1 ID=Ggra9967.t1|Name=Ggra9967.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=342bp
MNSGIIRTVGATRRGVIPSISDCSLSTPIHTGSPYKAAAPEQLALQPPSH
TTFPQLIPPYYHTKPQTTTLPHPNPISHYTTHQSPTQPHFNPPQDPSHFP
TPQKHPAHFPTPSYLYNPSLRPTTTRYPRSTTQLPRYHPPLLVTPAPLMN
SVVTVLLQLHLYALSSRTVFSSGTSLYNDKDDKQLGAEANDLLQVLLWFS
DVVKGTCDQIRPFWAKHSNPLPRGIEKLKGDLLLNRVVEYGLEADQKYRH
AQAVAEIFLRGLGEPKAVDEATFEMLREADVEQCSDCRDVCRVPGEGSGT
DCERSAGRFAVACACHFLQHEGHTPTPGAGGRPCSAATSWR*
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mRNA from alignment at tig00000882_pilon:97950..98975-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9967.t1 ID=Ggra9967.t1|Name=Ggra9967.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1026bp|location=Sequence derived from alignment at tig00000882_pilon:97950..98975- (Gracilaria gracilis GNS1m male)
ATGAATTCTGGCATCATCCGCACCGTGGGAGCAACCAGGAGAGGGGTGAT
CCCCTCAATTTCCGATTGCTCATTGTCAACACCGATCCACACTGGTTCGC
CGTACAAGGCGGCCGCACCTGAACAACTTGCTTTACAACCGCCCTCGCAC
ACCACATTTCCCCAACTTATCCCACCCTACTACCACACCAAACCTCAGAC
TACTACCCTACCTCACCCTAACCCAATTTCCCATTATACCACACATCAAT
CCCCCACCCAACCCCACTTCAATCCACCACAAGACCCCAGCCACTTCCCT
ACCCCCCAAAAGCACCCAGCCCACTTTCCTACTCCCTCATACCTCTACAA
TCCCTCACTACGCCCCACCACTACTCGTTACCCCCGCTCCACAACCCAAC
TGCCTCGCTACCACCCACCACTACTCGTTACTCCCGCTCCCCTAATGAAT
TCCGTCGTGACGGTGTTGCTACAACTTCACCTGTACGCATTGTCGTCGCG
CACAGTGTTCTCGAGCGGCACATCGTTGTACAACGACAAGGATGATAAGC
AGCTGGGTGCAGAAGCAAATGACCTGCTGCAGGTGTTGCTCTGGTTCAGC
GATGTGGTCAAAGGTACCTGCGATCAGATTCGGCCCTTTTGGGCGAAACA
TTCAAATCCATTGCCTCGCGGCATTGAAAAGTTGAAGGGCGATCTCCTAC
TGAATCGCGTTGTAGAGTACGGTCTTGAAGCGGACCAGAAGTACAGGCAC
GCGCAGGCCGTCGCCGAGATCTTCCTGAGGGGGCTCGGGGAACCAAAAGC
GGTGGACGAAGCCACATTTGAAATGCTGCGGGAAGCTGATGTCGAGCAGT
GCAGCGATTGCCGGGATGTGTGTCGCGTGCCTGGCGAAGGAAGCGGCACG
GACTGCGAAAGAAGCGCAGGACGGTTTGCAGTTGCTTGTGCGTGCCATTT
CCTGCAGCACGAAGGCCATACACCGACGCCAGGTGCGGGAGGACGACCAT
GCTCCGCGGCGACCAGCTGGAGGTAG
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Coding sequence (CDS) from alignment at tig00000882_pilon:97950..98975-

>Ggra9967.t1 ID=Ggra9967.t1|Name=Ggra9967.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1026bp|location=Sequence derived from alignment at tig00000882_pilon:97950..98975- (Gracilaria gracilis GNS1m male)
ATGAATTCTGGCATCATCCGCACCGTGGGAGCAACCAGGAGAGGGGTGAT
CCCCTCAATTTCCGATTGCTCATTGTCAACACCGATCCACACTGGTTCGC
CGTACAAGGCGGCCGCACCTGAACAACTTGCTTTACAACCGCCCTCGCAC
ACCACATTTCCCCAACTTATCCCACCCTACTACCACACCAAACCTCAGAC
TACTACCCTACCTCACCCTAACCCAATTTCCCATTATACCACACATCAAT
CCCCCACCCAACCCCACTTCAATCCACCACAAGACCCCAGCCACTTCCCT
ACCCCCCAAAAGCACCCAGCCCACTTTCCTACTCCCTCATACCTCTACAA
TCCCTCACTACGCCCCACCACTACTCGTTACCCCCGCTCCACAACCCAAC
TGCCTCGCTACCACCCACCACTACTCGTTACTCCCGCTCCCCTAATGAAT
TCCGTCGTGACGGTGTTGCTACAACTTCACCTGTACGCATTGTCGTCGCG
CACAGTGTTCTCGAGCGGCACATCGTTGTACAACGACAAGGATGATAAGC
AGCTGGGTGCAGAAGCAAATGACCTGCTGCAGGTGTTGCTCTGGTTCAGC
GATGTGGTCAAAGGTACCTGCGATCAGATTCGGCCCTTTTGGGCGAAACA
TTCAAATCCATTGCCTCGCGGCATTGAAAAGTTGAAGGGCGATCTCCTAC
TGAATCGCGTTGTAGAGTACGGTCTTGAAGCGGACCAGAAGTACAGGCAC
GCGCAGGCCGTCGCCGAGATCTTCCTGAGGGGGCTCGGGGAACCAAAAGC
GGTGGACGAAGCCACATTTGAAATGCTGCGGGAAGCTGATGTCGAGCAGT
GCAGCGATTGCCGGGATGTGTGTCGCGTGCCTGGCGAAGGAAGCGGCACG
GACTGCGAAAGAAGCGCAGGACGGTTTGCAGTTGCTTGTGCGTGCCATTT
CCTGCAGCACGAAGGCCATACACCGACGCCAGGTGCGGGAGGACGACCAT
GCTCCGCGGCGACCAGCTGGAGGTAG
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