Ggra9961.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9961.t1
Unique NameGgra9961.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length247
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000882_piloncontigtig00000882_pilon:62444..63184 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9961Ggra9961Gracilaria gracilis GNS1m malegenetig00000882_pilon 62444..63184 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9961.t1.stop1Ggra9961.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000882_pilon 62444..62446 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9961.t1.CDS1Ggra9961.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000882_pilon 62444..63184 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9961.t1.exon1Ggra9961.t1.exon1Gracilaria gracilis GNS1m maleexontig00000882_pilon 62444..63184 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9961.t1.start1Ggra9961.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000882_pilon 63182..63184 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9961.t1Ggra9961.t1Gracilaria gracilis GNS1m malepolypeptidetig00000882_pilon 62444..63184 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9961.t1 ID=Ggra9961.t1|Name=Ggra9961.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=247bp
MTILTRLLALFFFSLLLHAAYAVPLAGEHQSLQTTTTTAQHASRVVPASS
WRLRPTLFYRRLARLVYNSAPLLSYALRNILSYAVNKHLPYALNNLPYPL
KELLSHALSECLSYALSKHIPYALKRLTIWAIRSDMSNTLPFPEYFELVT
FCMQLDDDQLLDTIFNSGGPWLTTSRLRQLQMYIPRFEQLYHDNNPYVSH
IFGILVRRAISDQYSSALPFSTLVDMVAHGLEAGNVQLAYNYLHRY*
back to top

spliced messenger RNA

>Ggra9961.t1 ID=Ggra9961.t1|Name=Ggra9961.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=741bp|location=Sequence derived from alignment at tig00000882_pilon:62444..63184- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCATCCTTACTCGCCTTCTTGCTCTTTTCTTCTTCTCGCTGCTGCT
ACACGCGGCCTACGCAGTGCCGCTAGCGGGTGAACACCAGTCGCTGCAAA
CCACCACTACAACAGCTCAACACGCCTCACGCGTCGTTCCGGCTTCTTCC
TGGCGACTTCGCCCGACCTTGTTCTATCGTCGCCTTGCTCGGCTCGTCTA
CAACTCTGCTCCGCTTCTTTCGTACGCTCTCAGGAACATTCTTTCATACG
CCGTCAACAAACATCTTCCGTACGCTCTCAACAATCTTCCCTACCCTCTC
AAGGAGCTCCTTTCGCATGCCCTCAGCGAGTGTCTTTCGTATGCCCTCAG
CAAGCATATTCCGTACGCGCTCAAGAGGCTTACCATTTGGGCAATCCGCT
CCGACATGTCGAACACACTGCCATTCCCGGAGTACTTTGAACTAGTCACC
TTCTGCATGCAGTTAGATGACGACCAGCTTCTGGATACTATATTCAATAG
TGGTGGCCCGTGGCTCACCACCTCCAGACTGCGTCAGTTGCAGATGTATA
TTCCGCGTTTTGAGCAGCTTTATCACGACAACAACCCGTATGTGTCGCAT
ATATTTGGCATCCTCGTTCGCCGCGCAATATCCGATCAGTATTCCAGCGC
TCTGCCTTTCTCCACGCTGGTGGACATGGTGGCGCACGGCCTGGAAGCGG
GCAATGTGCAGCTCGCGTATAACTATTTGCACCGTTACTAA
back to top

protein sequence of Ggra9961.t1

>Ggra9961.t1 ID=Ggra9961.t1|Name=Ggra9961.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=247bp
MTILTRLLALFFFSLLLHAAYAVPLAGEHQSLQTTTTTAQHASRVVPASS
WRLRPTLFYRRLARLVYNSAPLLSYALRNILSYAVNKHLPYALNNLPYPL
KELLSHALSECLSYALSKHIPYALKRLTIWAIRSDMSNTLPFPEYFELVT
FCMQLDDDQLLDTIFNSGGPWLTTSRLRQLQMYIPRFEQLYHDNNPYVSH
IFGILVRRAISDQYSSALPFSTLVDMVAHGLEAGNVQLAYNYLHRY*
back to top

mRNA from alignment at tig00000882_pilon:62444..63184-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9961.t1 ID=Ggra9961.t1|Name=Ggra9961.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=741bp|location=Sequence derived from alignment at tig00000882_pilon:62444..63184- (Gracilaria gracilis GNS1m male)
ATGACCATCCTTACTCGCCTTCTTGCTCTTTTCTTCTTCTCGCTGCTGCT
ACACGCGGCCTACGCAGTGCCGCTAGCGGGTGAACACCAGTCGCTGCAAA
CCACCACTACAACAGCTCAACACGCCTCACGCGTCGTTCCGGCTTCTTCC
TGGCGACTTCGCCCGACCTTGTTCTATCGTCGCCTTGCTCGGCTCGTCTA
CAACTCTGCTCCGCTTCTTTCGTACGCTCTCAGGAACATTCTTTCATACG
CCGTCAACAAACATCTTCCGTACGCTCTCAACAATCTTCCCTACCCTCTC
AAGGAGCTCCTTTCGCATGCCCTCAGCGAGTGTCTTTCGTATGCCCTCAG
CAAGCATATTCCGTACGCGCTCAAGAGGCTTACCATTTGGGCAATCCGCT
CCGACATGTCGAACACACTGCCATTCCCGGAGTACTTTGAACTAGTCACC
TTCTGCATGCAGTTAGATGACGACCAGCTTCTGGATACTATATTCAATAG
TGGTGGCCCGTGGCTCACCACCTCCAGACTGCGTCAGTTGCAGATGTATA
TTCCGCGTTTTGAGCAGCTTTATCACGACAACAACCCGTATGTGTCGCAT
ATATTTGGCATCCTCGTTCGCCGCGCAATATCCGATCAGTATTCCAGCGC
TCTGCCTTTCTCCACGCTGGTGGACATGGTGGCGCACGGCCTGGAAGCGG
GCAATGTGCAGCTCGCGTATAACTATTTGCACCGTTACTAA
back to top

Coding sequence (CDS) from alignment at tig00000882_pilon:62444..63184-

>Ggra9961.t1 ID=Ggra9961.t1|Name=Ggra9961.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=741bp|location=Sequence derived from alignment at tig00000882_pilon:62444..63184- (Gracilaria gracilis GNS1m male)
ATGACCATCCTTACTCGCCTTCTTGCTCTTTTCTTCTTCTCGCTGCTGCT
ACACGCGGCCTACGCAGTGCCGCTAGCGGGTGAACACCAGTCGCTGCAAA
CCACCACTACAACAGCTCAACACGCCTCACGCGTCGTTCCGGCTTCTTCC
TGGCGACTTCGCCCGACCTTGTTCTATCGTCGCCTTGCTCGGCTCGTCTA
CAACTCTGCTCCGCTTCTTTCGTACGCTCTCAGGAACATTCTTTCATACG
CCGTCAACAAACATCTTCCGTACGCTCTCAACAATCTTCCCTACCCTCTC
AAGGAGCTCCTTTCGCATGCCCTCAGCGAGTGTCTTTCGTATGCCCTCAG
CAAGCATATTCCGTACGCGCTCAAGAGGCTTACCATTTGGGCAATCCGCT
CCGACATGTCGAACACACTGCCATTCCCGGAGTACTTTGAACTAGTCACC
TTCTGCATGCAGTTAGATGACGACCAGCTTCTGGATACTATATTCAATAG
TGGTGGCCCGTGGCTCACCACCTCCAGACTGCGTCAGTTGCAGATGTATA
TTCCGCGTTTTGAGCAGCTTTATCACGACAACAACCCGTATGTGTCGCAT
ATATTTGGCATCCTCGTTCGCCGCGCAATATCCGATCAGTATTCCAGCGC
TCTGCCTTTCTCCACGCTGGTGGACATGGTGGCGCACGGCCTGGAAGCGG
GCAATGTGCAGCTCGCGTATAACTATTTGCACCGTTACTAA
back to top