Ggra9960.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9960.t1
Unique NameGgra9960.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length236
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000882_piloncontigtig00000882_pilon:36008..36715 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9960Ggra9960Gracilaria gracilis GNS1m malegenetig00000882_pilon 36008..36715 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9960.t1.stop1Ggra9960.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000882_pilon 36008..36010 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9960.t1.CDS1Ggra9960.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000882_pilon 36008..36715 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9960.t1.exon1Ggra9960.t1.exon1Gracilaria gracilis GNS1m maleexontig00000882_pilon 36008..36715 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9960.t1.start1Ggra9960.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000882_pilon 36713..36715 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9960.t1Ggra9960.t1Gracilaria gracilis GNS1m malepolypeptidetig00000882_pilon 36008..36715 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9960.t1 ID=Ggra9960.t1|Name=Ggra9960.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=236bp
MTSFPRLLLLMLLLHAAYAVPLTGEHQSLQTTTSEPARTSRVVPPFSWCL
CPTLFPLRLDRLREKSAPLLSYALSNILSYALNNHLPDPLSNLPYRLMKL
LSYAFKKLLPYALRKLTIWAIRSDLWDTLPFTEYFALVTFCMELDDHQLL
DIIFNNGGSWLTTSRLRQLQMRTPRFEQLYHESNPYVSHLFGILLRRALS
DQYSSSLPFSTLVDMVAHRLEAGNVQLAYNYLHLY*
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spliced messenger RNA

>Ggra9960.t1 ID=Ggra9960.t1|Name=Ggra9960.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=708bp|location=Sequence derived from alignment at tig00000882_pilon:36008..36715- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCAGCTTTCCTCGCCTTCTCTTGCTCATGCTGCTGCTACACGCTGC
CTATGCAGTGCCGCTAACGGGTGAACACCAGTCGCTGCAAACCACCACTT
CGGAACCCGCTCGTACATCCCGCGTCGTTCCGCCTTTCTCCTGGTGCCTT
TGCCCCACCTTGTTCCCTCTTCGTCTTGATCGACTGCGCGAAAAATCTGC
TCCACTTCTTTCGTACGCCCTCAGCAACATTCTTTCTTACGCTCTCAACA
ACCATCTTCCGGACCCTCTCAGCAACCTTCCCTACCGTCTCATGAAGCTT
CTCTCCTATGCTTTCAAGAAGCTTCTCCCGTACGCTCTCAGGAAGCTTAC
CATATGGGCAATCCGCTCCGACCTGTGGGACACACTGCCCTTCACGGAGT
ACTTTGCATTAGTCACCTTCTGCATGGAGCTGGATGACCACCAGCTCCTG
GATATTATCTTCAATAATGGTGGCTCGTGGCTTACCACTTCTAGACTGCG
TCAGTTGCAGATGCGTACACCGCGCTTTGAGCAACTTTATCACGAAAGCA
ATCCGTATGTGTCGCATTTATTCGGCATTCTCCTTCGTCGCGCCCTATCC
GATCAGTATTCCAGCTCTCTGCCTTTCTCTACGCTGGTGGACATGGTGGC
GCACCGGCTGGAAGCGGGAAATGTGCAGCTCGCGTATAACTATTTGCACC
TTTATTAA
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protein sequence of Ggra9960.t1

>Ggra9960.t1 ID=Ggra9960.t1|Name=Ggra9960.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=236bp
MTSFPRLLLLMLLLHAAYAVPLTGEHQSLQTTTSEPARTSRVVPPFSWCL
CPTLFPLRLDRLREKSAPLLSYALSNILSYALNNHLPDPLSNLPYRLMKL
LSYAFKKLLPYALRKLTIWAIRSDLWDTLPFTEYFALVTFCMELDDHQLL
DIIFNNGGSWLTTSRLRQLQMRTPRFEQLYHESNPYVSHLFGILLRRALS
DQYSSSLPFSTLVDMVAHRLEAGNVQLAYNYLHLY*
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mRNA from alignment at tig00000882_pilon:36008..36715-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9960.t1 ID=Ggra9960.t1|Name=Ggra9960.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=708bp|location=Sequence derived from alignment at tig00000882_pilon:36008..36715- (Gracilaria gracilis GNS1m male)
ATGACCAGCTTTCCTCGCCTTCTCTTGCTCATGCTGCTGCTACACGCTGC
CTATGCAGTGCCGCTAACGGGTGAACACCAGTCGCTGCAAACCACCACTT
CGGAACCCGCTCGTACATCCCGCGTCGTTCCGCCTTTCTCCTGGTGCCTT
TGCCCCACCTTGTTCCCTCTTCGTCTTGATCGACTGCGCGAAAAATCTGC
TCCACTTCTTTCGTACGCCCTCAGCAACATTCTTTCTTACGCTCTCAACA
ACCATCTTCCGGACCCTCTCAGCAACCTTCCCTACCGTCTCATGAAGCTT
CTCTCCTATGCTTTCAAGAAGCTTCTCCCGTACGCTCTCAGGAAGCTTAC
CATATGGGCAATCCGCTCCGACCTGTGGGACACACTGCCCTTCACGGAGT
ACTTTGCATTAGTCACCTTCTGCATGGAGCTGGATGACCACCAGCTCCTG
GATATTATCTTCAATAATGGTGGCTCGTGGCTTACCACTTCTAGACTGCG
TCAGTTGCAGATGCGTACACCGCGCTTTGAGCAACTTTATCACGAAAGCA
ATCCGTATGTGTCGCATTTATTCGGCATTCTCCTTCGTCGCGCCCTATCC
GATCAGTATTCCAGCTCTCTGCCTTTCTCTACGCTGGTGGACATGGTGGC
GCACCGGCTGGAAGCGGGAAATGTGCAGCTCGCGTATAACTATTTGCACC
TTTATTAA
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Coding sequence (CDS) from alignment at tig00000882_pilon:36008..36715-

>Ggra9960.t1 ID=Ggra9960.t1|Name=Ggra9960.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=708bp|location=Sequence derived from alignment at tig00000882_pilon:36008..36715- (Gracilaria gracilis GNS1m male)
ATGACCAGCTTTCCTCGCCTTCTCTTGCTCATGCTGCTGCTACACGCTGC
CTATGCAGTGCCGCTAACGGGTGAACACCAGTCGCTGCAAACCACCACTT
CGGAACCCGCTCGTACATCCCGCGTCGTTCCGCCTTTCTCCTGGTGCCTT
TGCCCCACCTTGTTCCCTCTTCGTCTTGATCGACTGCGCGAAAAATCTGC
TCCACTTCTTTCGTACGCCCTCAGCAACATTCTTTCTTACGCTCTCAACA
ACCATCTTCCGGACCCTCTCAGCAACCTTCCCTACCGTCTCATGAAGCTT
CTCTCCTATGCTTTCAAGAAGCTTCTCCCGTACGCTCTCAGGAAGCTTAC
CATATGGGCAATCCGCTCCGACCTGTGGGACACACTGCCCTTCACGGAGT
ACTTTGCATTAGTCACCTTCTGCATGGAGCTGGATGACCACCAGCTCCTG
GATATTATCTTCAATAATGGTGGCTCGTGGCTTACCACTTCTAGACTGCG
TCAGTTGCAGATGCGTACACCGCGCTTTGAGCAACTTTATCACGAAAGCA
ATCCGTATGTGTCGCATTTATTCGGCATTCTCCTTCGTCGCGCCCTATCC
GATCAGTATTCCAGCTCTCTGCCTTTCTCTACGCTGGTGGACATGGTGGC
GCACCGGCTGGAAGCGGGAAATGTGCAGCTCGCGTATAACTATTTGCACC
TTTATTAA
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