Ggra9959.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9959.t1
Unique NameGgra9959.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length288
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000882_piloncontigtig00000882_pilon:15693..16556 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9959Ggra9959Gracilaria gracilis GNS1m malegenetig00000882_pilon 15693..16556 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9959.t1.start1Ggra9959.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000882_pilon 15693..15695 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9959.t1.CDS1Ggra9959.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000882_pilon 15693..16556 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9959.t1.exon1Ggra9959.t1.exon1Gracilaria gracilis GNS1m maleexontig00000882_pilon 15693..16556 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9959.t1.stop1Ggra9959.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000882_pilon 16554..16556 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9959.t1Ggra9959.t1Gracilaria gracilis GNS1m malepolypeptidetig00000882_pilon 15693..16556 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9959.t1 ID=Ggra9959.t1|Name=Ggra9959.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=288bp
MEASLQLASVVLLLAVDAVPPPSQRWCTRTGASSTDPSARVVPPSAVVAF
IVCMLFPVICRFVIDLLDLYANPRPHNTFLPKAKLVILIVMFYASCLTGL
ALAVFAIIQHNVDMGGGAVGLLISVYASNLTRSSSSRLRMTLCCQLFHHL
PDASAPLLSYTLKRLTRMAISSDLWASLPFDQYLELVSFCVQLGDEQMLD
IMFNVGSSLYTTSRLRHLHTRMPHFQDLHDAGNPLVKHTFSALVRHGVRE
NYSSSLPFSERVDAAIHCMQTGETQLLNAILHFDSAH*
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spliced messenger RNA

>Ggra9959.t1 ID=Ggra9959.t1|Name=Ggra9959.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=864bp|location=Sequence derived from alignment at tig00000882_pilon:15693..16556+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAGCTTCGCTTCAGCTAGCCTCTGTCGTCTTGCTGCTCGCCGTCGA
CGCAGTACCACCTCCGTCTCAGCGTTGGTGCACCCGCACAGGAGCTTCAT
CCACTGACCCAAGCGCTCGAGTTGTACCACCATCAGCAGTCGTCGCTTTC
ATCGTCTGCATGCTCTTCCCCGTCATCTGTCGATTCGTCATCGACCTGTT
GGATCTCTATGCCAACCCTCGCCCGCACAACACCTTCCTTCCCAAAGCAA
AACTGGTCATCCTCATCGTCATGTTTTACGCCTCTTGCCTCACCGGCCTG
GCTCTCGCGGTGTTTGCAATCATTCAGCACAATGTCGACATGGGCGGTGG
CGCTGTCGGTCTTCTCATCTCCGTCTACGCCTCCAACCTGACTCGTAGCT
CTTCATCCAGGCTCCGAATGACCCTGTGCTGTCAACTGTTTCATCATCTT
CCAGATGCATCCGCCCCGCTCTTGTCGTACACTCTCAAGCGACTTACGCG
CATGGCCATCAGCTCCGATCTCTGGGCCAGTCTCCCGTTCGACCAATATC
TGGAACTCGTAAGCTTCTGTGTACAACTCGGCGACGAGCAAATGTTGGAC
ATCATGTTCAATGTCGGTAGCTCCTTGTACACCACATCCCGGCTGCGACA
CCTGCACACACGTATGCCACACTTTCAGGATCTTCATGATGCTGGTAACC
CATTGGTAAAACACACCTTCAGCGCTCTGGTCCGTCACGGGGTGAGAGAA
AACTATTCCAGCTCCCTGCCCTTTTCGGAGCGAGTGGATGCGGCCATACA
CTGCATGCAAACCGGTGAGACGCAGCTTCTCAACGCCATCCTGCATTTCG
ATTCAGCACATTGA
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protein sequence of Ggra9959.t1

>Ggra9959.t1 ID=Ggra9959.t1|Name=Ggra9959.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=288bp
MEASLQLASVVLLLAVDAVPPPSQRWCTRTGASSTDPSARVVPPSAVVAF
IVCMLFPVICRFVIDLLDLYANPRPHNTFLPKAKLVILIVMFYASCLTGL
ALAVFAIIQHNVDMGGGAVGLLISVYASNLTRSSSSRLRMTLCCQLFHHL
PDASAPLLSYTLKRLTRMAISSDLWASLPFDQYLELVSFCVQLGDEQMLD
IMFNVGSSLYTTSRLRHLHTRMPHFQDLHDAGNPLVKHTFSALVRHGVRE
NYSSSLPFSERVDAAIHCMQTGETQLLNAILHFDSAH*
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mRNA from alignment at tig00000882_pilon:15693..16556+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9959.t1 ID=Ggra9959.t1|Name=Ggra9959.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=864bp|location=Sequence derived from alignment at tig00000882_pilon:15693..16556+ (Gracilaria gracilis GNS1m male)
ATGGAAGCTTCGCTTCAGCTAGCCTCTGTCGTCTTGCTGCTCGCCGTCGA
CGCAGTACCACCTCCGTCTCAGCGTTGGTGCACCCGCACAGGAGCTTCAT
CCACTGACCCAAGCGCTCGAGTTGTACCACCATCAGCAGTCGTCGCTTTC
ATCGTCTGCATGCTCTTCCCCGTCATCTGTCGATTCGTCATCGACCTGTT
GGATCTCTATGCCAACCCTCGCCCGCACAACACCTTCCTTCCCAAAGCAA
AACTGGTCATCCTCATCGTCATGTTTTACGCCTCTTGCCTCACCGGCCTG
GCTCTCGCGGTGTTTGCAATCATTCAGCACAATGTCGACATGGGCGGTGG
CGCTGTCGGTCTTCTCATCTCCGTCTACGCCTCCAACCTGACTCGTAGCT
CTTCATCCAGGCTCCGAATGACCCTGTGCTGTCAACTGTTTCATCATCTT
CCAGATGCATCCGCCCCGCTCTTGTCGTACACTCTCAAGCGACTTACGCG
CATGGCCATCAGCTCCGATCTCTGGGCCAGTCTCCCGTTCGACCAATATC
TGGAACTCGTAAGCTTCTGTGTACAACTCGGCGACGAGCAAATGTTGGAC
ATCATGTTCAATGTCGGTAGCTCCTTGTACACCACATCCCGGCTGCGACA
CCTGCACACACGTATGCCACACTTTCAGGATCTTCATGATGCTGGTAACC
CATTGGTAAAACACACCTTCAGCGCTCTGGTCCGTCACGGGGTGAGAGAA
AACTATTCCAGCTCCCTGCCCTTTTCGGAGCGAGTGGATGCGGCCATACA
CTGCATGCAAACCGGTGAGACGCAGCTTCTCAACGCCATCCTGCATTTCG
ATTCAGCACATTGA
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Coding sequence (CDS) from alignment at tig00000882_pilon:15693..16556+

>Ggra9959.t1 ID=Ggra9959.t1|Name=Ggra9959.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=864bp|location=Sequence derived from alignment at tig00000882_pilon:15693..16556+ (Gracilaria gracilis GNS1m male)
ATGGAAGCTTCGCTTCAGCTAGCCTCTGTCGTCTTGCTGCTCGCCGTCGA
CGCAGTACCACCTCCGTCTCAGCGTTGGTGCACCCGCACAGGAGCTTCAT
CCACTGACCCAAGCGCTCGAGTTGTACCACCATCAGCAGTCGTCGCTTTC
ATCGTCTGCATGCTCTTCCCCGTCATCTGTCGATTCGTCATCGACCTGTT
GGATCTCTATGCCAACCCTCGCCCGCACAACACCTTCCTTCCCAAAGCAA
AACTGGTCATCCTCATCGTCATGTTTTACGCCTCTTGCCTCACCGGCCTG
GCTCTCGCGGTGTTTGCAATCATTCAGCACAATGTCGACATGGGCGGTGG
CGCTGTCGGTCTTCTCATCTCCGTCTACGCCTCCAACCTGACTCGTAGCT
CTTCATCCAGGCTCCGAATGACCCTGTGCTGTCAACTGTTTCATCATCTT
CCAGATGCATCCGCCCCGCTCTTGTCGTACACTCTCAAGCGACTTACGCG
CATGGCCATCAGCTCCGATCTCTGGGCCAGTCTCCCGTTCGACCAATATC
TGGAACTCGTAAGCTTCTGTGTACAACTCGGCGACGAGCAAATGTTGGAC
ATCATGTTCAATGTCGGTAGCTCCTTGTACACCACATCCCGGCTGCGACA
CCTGCACACACGTATGCCACACTTTCAGGATCTTCATGATGCTGGTAACC
CATTGGTAAAACACACCTTCAGCGCTCTGGTCCGTCACGGGGTGAGAGAA
AACTATTCCAGCTCCCTGCCCTTTTCGGAGCGAGTGGATGCGGCCATACA
CTGCATGCAAACCGGTGAGACGCAGCTTCTCAACGCCATCCTGCATTTCG
ATTCAGCACATTGA
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