Ggra995.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra995.t1
Unique NameGgra995.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length599
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000027_piloncontigtig00000027_pilon:98456..100380 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra995Ggra995Gracilaria gracilis GNS1m malegenetig00000027_pilon 98456..100380 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra995.t1Ggra995.t1Gracilaria gracilis GNS1m malepolypeptidetig00000027_pilon 98456..100380 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra995.t1.stop1Ggra995.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000027_pilon 98456..98458 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra995.t1.CDS1Ggra995.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000027_pilon 98456..99736 -
Ggra995.t1.CDS2Ggra995.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000027_pilon 99865..100380 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra995.t1.exon1Ggra995.t1.exon1Gracilaria gracilis GNS1m maleexontig00000027_pilon 98456..99736 -
Ggra995.t1.exon2Ggra995.t1.exon2Gracilaria gracilis GNS1m maleexontig00000027_pilon 99865..100380 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra995.t1.intron1Ggra995.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000027_pilon 99737..99864 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra995.t1.start1Ggra995.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000027_pilon 100378..100380 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra995.t1 ID=Ggra995.t1|Name=Ggra995.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=599bp
MEQDRAHSSMSDDDDDGDKDDATTTARHFVRFAKGEVRRHVEPQSDDGSH
AVTDERWRGVFDELEQQLAQHEQQQQQQQQQQQAAPALSQLQQAAAALIG
AAAAAAAAAAAAPGWAQQRELSGAFARRGRREQAAQLAQARRLCAFAQRW
LRGVARANGARGAARAARAADELRRRDARHARCRHDRDHDGAEEEEEEET
EPEQERVATVAVAAAQRVSVAREFVAHTLRFVRADGGVAGGERIRADVRA
LRAAFERAQLCVHQLVSAVNAAVRSAHRGALLEFDMYQHFTARRRSEHAA
AGDGDDGDHEDDDALARVEAAMTRGADERGAAAELGARIIAACSRLRGGV
QQGVARNAARRVAHAHSAAEVRAAVREWGGLDVLLLARLFAAVHALQQQR
RDAARAARVQRGVQRRRRRRRQRALMQATPPPLLPPRAALRELPLTAGVV
DLQREQSLLQRGAAEQPQHEGDDEREGGGGEALQQLRSECALDVRAVAQR
MRAAWQQQQQQQQQQPLRRDGARPPLLGARAAEALALGAHARAASVLAEL
SALRALLRAPRLDARVLAAAGAAAGWRAARRRRRHGAGWWRRSWRPRR*
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spliced messenger RNA

>Ggra995.t1 ID=Ggra995.t1|Name=Ggra995.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1797bp|location=Sequence derived from alignment at tig00000027_pilon:98456..100380- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGCAAGACAGAGCGCACAGCAGCATGAGCGACGACGACGACGACGG
CGACAAGGACGACGCGACGACGACGGCGCGGCACTTTGTGCGCTTTGCCA
AGGGCGAGGTGCGCAGACACGTCGAGCCGCAAAGCGACGACGGCTCGCAC
GCAGTGACGGACGAGCGGTGGCGCGGCGTGTTTGACGAGCTGGAGCAGCA
GCTCGCGCAGCACGAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGG
CGGCGCCCGCGCTGTCGCAGCTGCAGCAAGCGGCAGCAGCGCTGATAGGC
GCGGCGGCAGCGGCGGCGGCGGCGGCGGCGGCGGCTCCCGGGTGGGCGCA
GCAGCGCGAGCTATCGGGCGCGTTTGCGCGGCGCGGGCGGCGCGAGCAGG
CGGCGCAGCTGGCGCAGGCGCGGCGGCTGTGCGCGTTTGCGCAGCGCTGG
CTGCGCGGCGTGGCGCGCGCCAACGGCGCGCGCGGCGCGGCGCGCGCGGC
GCGAGCAGCCGACGAGCTGCGCCGCCGCGACGCGCGCCACGCGCGCTGCC
GCCACGACCGCGACCACGACGGCGCGGAGGAGGAGGAGGAGGAGGAGACG
GAGCCGGAGCAGGAGCGCGTGGCGACGGTGGCGGTGGCGGCGGCGCAGCG
CGTGAGCGTCGCGCGCGAGTTTGTGGCGCACACGCTGCGCTTTGTGCGCG
CCGACGGCGGCGTGGCGGGCGGCGAGCGCATCCGCGCCGACGTGCGCGCG
CTGCGCGCCGCGTTTGAACGCGCGCAGCTGTGCGTGCACCAGCTGGTCAG
CGCCGTCAACGCGGCGGTGCGCAGCGCCCATCGCGGCGCGCTGCTCGAGT
TTGACATGTACCAGCACTTTACGGCGCGCCGCCGCAGCGAGCACGCCGCC
GCCGGCGACGGCGACGACGGCGACCACGAGGACGACGACGCGCTGGCGCG
CGTCGAGGCGGCCATGACGCGCGGTGCGGACGAGCGCGGCGCGGCGGCCG
AGCTGGGCGCGCGCATCATCGCGGCGTGCAGCCGGCTGCGCGGCGGCGTG
CAGCAGGGCGTGGCGCGCAACGCGGCGCGGCGCGTGGCGCACGCGCACAG
CGCGGCGGAGGTGCGCGCCGCCGTGCGCGAGTGGGGCGGGCTGGACGTGC
TGCTGCTGGCGCGGCTGTTCGCCGCCGTGCACGCGCTGCAGCAGCAGCGG
CGCGACGCGGCGCGCGCGGCGCGCGTGCAGCGCGGCGTGCAGCGCCGCCG
CCGCCGCCGCCGACAGCGGGCGCTGATGCAAGCCACGCCGCCGCCGCTGC
TGCCGCCGCGCGCCGCGCTGCGCGAGCTGCCGCTCACGGCGGGCGTGGTG
GACCTGCAGCGCGAGCAGTCGCTGCTGCAGCGCGGCGCGGCCGAGCAGCC
CCAGCACGAAGGCGACGACGAGCGCGAGGGCGGCGGCGGCGAGGCGTTGC
AGCAGCTGCGGAGCGAGTGCGCGCTGGACGTGCGCGCAGTGGCGCAGCGC
ATGCGCGCCGCGTGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCCGCT
GCGACGCGACGGCGCGCGGCCGCCGCTGCTGGGCGCGCGCGCGGCGGAAG
CGCTGGCGCTGGGCGCGCACGCGCGCGCCGCCTCCGTGCTGGCGGAGCTG
AGCGCGCTACGCGCGCTGCTACGCGCGCCGCGGCTGGACGCGCGCGTGCT
GGCCGCGGCCGGCGCCGCCGCCGGCTGGCGCGCGGCGCGCCGCCGTCGCC
GCCACGGCGCCGGCTGGTGGCGCCGCAGCTGGCGCCCGCGCCGCTGA
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protein sequence of Ggra995.t1

>Ggra995.t1 ID=Ggra995.t1|Name=Ggra995.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=599bp
MEQDRAHSSMSDDDDDGDKDDATTTARHFVRFAKGEVRRHVEPQSDDGSH
AVTDERWRGVFDELEQQLAQHEQQQQQQQQQQQAAPALSQLQQAAAALIG
AAAAAAAAAAAAPGWAQQRELSGAFARRGRREQAAQLAQARRLCAFAQRW
LRGVARANGARGAARAARAADELRRRDARHARCRHDRDHDGAEEEEEEET
EPEQERVATVAVAAAQRVSVAREFVAHTLRFVRADGGVAGGERIRADVRA
LRAAFERAQLCVHQLVSAVNAAVRSAHRGALLEFDMYQHFTARRRSEHAA
AGDGDDGDHEDDDALARVEAAMTRGADERGAAAELGARIIAACSRLRGGV
QQGVARNAARRVAHAHSAAEVRAAVREWGGLDVLLLARLFAAVHALQQQR
RDAARAARVQRGVQRRRRRRRQRALMQATPPPLLPPRAALRELPLTAGVV
DLQREQSLLQRGAAEQPQHEGDDEREGGGGEALQQLRSECALDVRAVAQR
MRAAWQQQQQQQQQQPLRRDGARPPLLGARAAEALALGAHARAASVLAEL
SALRALLRAPRLDARVLAAAGAAAGWRAARRRRRHGAGWWRRSWRPRR*
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mRNA from alignment at tig00000027_pilon:98456..100380-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra995.t1 ID=Ggra995.t1|Name=Ggra995.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1925bp|location=Sequence derived from alignment at tig00000027_pilon:98456..100380- (Gracilaria gracilis GNS1m male)
ATGGAGCAAGACAGAGCGCACAGCAGCATGAGCGACGACGACGACGACGG
CGACAAGGACGACGCGACGACGACGGCGCGGCACTTTGTGCGCTTTGCCA
AGGGCGAGGTGCGCAGACACGTCGAGCCGCAAAGCGACGACGGCTCGCAC
GCAGTGACGGACGAGCGGTGGCGCGGCGTGTTTGACGAGCTGGAGCAGCA
GCTCGCGCAGCACGAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGG
CGGCGCCCGCGCTGTCGCAGCTGCAGCAAGCGGCAGCAGCGCTGATAGGC
GCGGCGGCAGCGGCGGCGGCGGCGGCGGCGGCGGCTCCCGGGTGGGCGCA
GCAGCGCGAGCTATCGGGCGCGTTTGCGCGGCGCGGGCGGCGCGAGCAGG
CGGCGCAGCTGGCGCAGGCGCGGCGGCTGTGCGCGTTTGCGCAGCGCTGG
CTGCGCGGCGTGGCGCGCGCCAACGGCGCGCGCGGCGCGGCGCGCGCGGC
GCGAGCAGCCGACGAGGTGCGCGCGGCGCTGGCGCACTTCGAGGCGGCGC
GCTGCGAGTGGCGCCAGCTGCTGGCGCGCGTGAACGACGCGGCGCGCCTC
GCTGGCGCCGCGCACCGCTGGCGGCCGCCTGTCTGCTGCGCGAGCTGCGC
CGCCGCGACGCGCGCCACGCGCGCTGCCGCCACGACCGCGACCACGACGG
CGCGGAGGAGGAGGAGGAGGAGGAGACGGAGCCGGAGCAGGAGCGCGTGG
CGACGGTGGCGGTGGCGGCGGCGCAGCGCGTGAGCGTCGCGCGCGAGTTT
GTGGCGCACACGCTGCGCTTTGTGCGCGCCGACGGCGGCGTGGCGGGCGG
CGAGCGCATCCGCGCCGACGTGCGCGCGCTGCGCGCCGCGTTTGAACGCG
CGCAGCTGTGCGTGCACCAGCTGGTCAGCGCCGTCAACGCGGCGGTGCGC
AGCGCCCATCGCGGCGCGCTGCTCGAGTTTGACATGTACCAGCACTTTAC
GGCGCGCCGCCGCAGCGAGCACGCCGCCGCCGGCGACGGCGACGACGGCG
ACCACGAGGACGACGACGCGCTGGCGCGCGTCGAGGCGGCCATGACGCGC
GGTGCGGACGAGCGCGGCGCGGCGGCCGAGCTGGGCGCGCGCATCATCGC
GGCGTGCAGCCGGCTGCGCGGCGGCGTGCAGCAGGGCGTGGCGCGCAACG
CGGCGCGGCGCGTGGCGCACGCGCACAGCGCGGCGGAGGTGCGCGCCGCC
GTGCGCGAGTGGGGCGGGCTGGACGTGCTGCTGCTGGCGCGGCTGTTCGC
CGCCGTGCACGCGCTGCAGCAGCAGCGGCGCGACGCGGCGCGCGCGGCGC
GCGTGCAGCGCGGCGTGCAGCGCCGCCGCCGCCGCCGCCGACAGCGGGCG
CTGATGCAAGCCACGCCGCCGCCGCTGCTGCCGCCGCGCGCCGCGCTGCG
CGAGCTGCCGCTCACGGCGGGCGTGGTGGACCTGCAGCGCGAGCAGTCGC
TGCTGCAGCGCGGCGCGGCCGAGCAGCCCCAGCACGAAGGCGACGACGAG
CGCGAGGGCGGCGGCGGCGAGGCGTTGCAGCAGCTGCGGAGCGAGTGCGC
GCTGGACGTGCGCGCAGTGGCGCAGCGCATGCGCGCCGCGTGGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCCGCTGCGACGCGACGGCGCGCGGCCG
CCGCTGCTGGGCGCGCGCGCGGCGGAAGCGCTGGCGCTGGGCGCGCACGC
GCGCGCCGCCTCCGTGCTGGCGGAGCTGAGCGCGCTACGCGCGCTGCTAC
GCGCGCCGCGGCTGGACGCGCGCGTGCTGGCCGCGGCCGGCGCCGCCGCC
GGCTGGCGCGCGGCGCGCCGCCGTCGCCGCCACGGCGCCGGCTGGTGGCG
CCGCAGCTGGCGCCCGCGCCGCTGA
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Coding sequence (CDS) from alignment at tig00000027_pilon:98456..100380-

>Ggra995.t1 ID=Ggra995.t1|Name=Ggra995.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1797bp|location=Sequence derived from alignment at tig00000027_pilon:98456..100380- (Gracilaria gracilis GNS1m male)
ATGGAGCAAGACAGAGCGCACAGCAGCATGAGCGACGACGACGACGACGG
CGACAAGGACGACGCGACGACGACGGCGCGGCACTTTGTGCGCTTTGCCA
AGGGCGAGGTGCGCAGACACGTCGAGCCGCAAAGCGACGACGGCTCGCAC
GCAGTGACGGACGAGCGGTGGCGCGGCGTGTTTGACGAGCTGGAGCAGCA
GCTCGCGCAGCACGAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGG
CGGCGCCCGCGCTGTCGCAGCTGCAGCAAGCGGCAGCAGCGCTGATAGGC
GCGGCGGCAGCGGCGGCGGCGGCGGCGGCGGCGGCTCCCGGGTGGGCGCA
GCAGCGCGAGCTATCGGGCGCGTTTGCGCGGCGCGGGCGGCGCGAGCAGG
CGGCGCAGCTGGCGCAGGCGCGGCGGCTGTGCGCGTTTGCGCAGCGCTGG
CTGCGCGGCGTGGCGCGCGCCAACGGCGCGCGCGGCGCGGCGCGCGCGGC
GCGAGCAGCCGACGAGCTGCGCCGCCGCGACGCGCGCCACGCGCGCTGCC
GCCACGACCGCGACCACGACGGCGCGGAGGAGGAGGAGGAGGAGGAGACG
GAGCCGGAGCAGGAGCGCGTGGCGACGGTGGCGGTGGCGGCGGCGCAGCG
CGTGAGCGTCGCGCGCGAGTTTGTGGCGCACACGCTGCGCTTTGTGCGCG
CCGACGGCGGCGTGGCGGGCGGCGAGCGCATCCGCGCCGACGTGCGCGCG
CTGCGCGCCGCGTTTGAACGCGCGCAGCTGTGCGTGCACCAGCTGGTCAG
CGCCGTCAACGCGGCGGTGCGCAGCGCCCATCGCGGCGCGCTGCTCGAGT
TTGACATGTACCAGCACTTTACGGCGCGCCGCCGCAGCGAGCACGCCGCC
GCCGGCGACGGCGACGACGGCGACCACGAGGACGACGACGCGCTGGCGCG
CGTCGAGGCGGCCATGACGCGCGGTGCGGACGAGCGCGGCGCGGCGGCCG
AGCTGGGCGCGCGCATCATCGCGGCGTGCAGCCGGCTGCGCGGCGGCGTG
CAGCAGGGCGTGGCGCGCAACGCGGCGCGGCGCGTGGCGCACGCGCACAG
CGCGGCGGAGGTGCGCGCCGCCGTGCGCGAGTGGGGCGGGCTGGACGTGC
TGCTGCTGGCGCGGCTGTTCGCCGCCGTGCACGCGCTGCAGCAGCAGCGG
CGCGACGCGGCGCGCGCGGCGCGCGTGCAGCGCGGCGTGCAGCGCCGCCG
CCGCCGCCGCCGACAGCGGGCGCTGATGCAAGCCACGCCGCCGCCGCTGC
TGCCGCCGCGCGCCGCGCTGCGCGAGCTGCCGCTCACGGCGGGCGTGGTG
GACCTGCAGCGCGAGCAGTCGCTGCTGCAGCGCGGCGCGGCCGAGCAGCC
CCAGCACGAAGGCGACGACGAGCGCGAGGGCGGCGGCGGCGAGGCGTTGC
AGCAGCTGCGGAGCGAGTGCGCGCTGGACGTGCGCGCAGTGGCGCAGCGC
ATGCGCGCCGCGTGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCCGCT
GCGACGCGACGGCGCGCGGCCGCCGCTGCTGGGCGCGCGCGCGGCGGAAG
CGCTGGCGCTGGGCGCGCACGCGCGCGCCGCCTCCGTGCTGGCGGAGCTG
AGCGCGCTACGCGCGCTGCTACGCGCGCCGCGGCTGGACGCGCGCGTGCT
GGCCGCGGCCGGCGCCGCCGCCGGCTGGCGCGCGGCGCGCCGCCGTCGCC
GCCACGGCGCCGGCTGGTGGCGCCGCAGCTGGCGCCCGCGCCGCTGA
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