Ggra9934.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9934.t1
Unique NameGgra9934.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length262
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000887_piloncontigtig00000887_pilon:130501..131455 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2903.EOD11616
Preferred nameNDUFA2
PFAMsL51_S25_CI-B8
Max annot lvl2759|Eukaryota
KEGG koko:K03946
KEGG TC3.D.1.6
KEGG Pathwayko00190,ko01100,ko04714,ko04723,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map04714,map04723,map04932,map05010,map05012,map05016
KEGG ModuleM00146
GOsGO:0003674,GO:0003824,GO:0003954,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005747,GO:0006091,GO:0006119,GO:0006120,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0007005,GO:0008137,GO:0008150,GO:0008152,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009987,GO:0010257,GO:0015980,GO:0016020,GO:0016043,GO:0016310,GO:0016491,GO:0016651,GO:0016655,GO:0017144,GO:0019637,GO:0019693,GO:0019866,GO:0022607,GO:0022900,GO:0022904,GO:0030964,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032981,GO:0032991,GO:0033108,GO:0034622,GO:0034641,GO:0042773,GO:0042775,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045271,GO:0045333,GO:0046034,GO:0046483,GO:0050136,GO:0055086,GO:0055114,GO:0065003,GO:0070469,GO:0071704,GO:0071840,GO:0072521,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:1901135,GO:1901360,GO:1901564,GO:1902494,GO:1990204
Evalue2.51e-68
EggNOG OGsCOG1720@1|root,KOG3446@1|root,KOG2942@2759|Eukaryota,KOG3446@2759|Eukaryota
Descriptionmitochondrial respiratory chain complex I assembly
COG categoryS
BRITEko00000,ko00001,ko00002
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9934Ggra9934Gracilaria gracilis GNS1m malegenetig00000887_pilon 130501..131455 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9934.t1Ggra9934.t1Gracilaria gracilis GNS1m malepolypeptidetig00000887_pilon 130501..131455 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9934.t1.start1Ggra9934.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000887_pilon 130501..130503 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9934.t1.CDS1Ggra9934.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000887_pilon 130501..130704 +
Ggra9934.t1.CDS2Ggra9934.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000887_pilon 130802..131165 +
Ggra9934.t1.CDS3Ggra9934.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000887_pilon 131238..131455 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9934.t1.exon1Ggra9934.t1.exon1Gracilaria gracilis GNS1m maleexontig00000887_pilon 130501..130704 +
Ggra9934.t1.exon2Ggra9934.t1.exon2Gracilaria gracilis GNS1m maleexontig00000887_pilon 130802..131165 +
Ggra9934.t1.exon3Ggra9934.t1.exon3Gracilaria gracilis GNS1m maleexontig00000887_pilon 131238..131455 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9934.t1.intron1Ggra9934.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000887_pilon 130705..130801 +
Ggra9934.t1.intron2Ggra9934.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000887_pilon 131166..131237 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9934.t1.stop1Ggra9934.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000887_pilon 131453..131455 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9934.t1 ID=Ggra9934.t1|Name=Ggra9934.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=262bp
MQKADAQDRDDRVHSPSQNDGQPLPSRRVSDQLAAKRREKPPMRYTEDFQ
TPETVTMRTIGVVRSPYKERFGTPRQPIVTQNTLGNEMQPATIELFKNCR
YELALRGLAQFEYCWVVSFFHLNQGFNPLVTPPRGPRQKQGVFATRSPHR
PNSIGLSCIRITSVDEKEGLVHLLGVDLLDGTPVLDIKPYVPYCDSFPNA
KSGWLDKLSEDMKAPDSLGYHPPPAHLMQGSSTKASEAQEEYEKREVESN
ANTSGLDTNKE*
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spliced messenger RNA

>Ggra9934.t1 ID=Ggra9934.t1|Name=Ggra9934.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=786bp|location=Sequence derived from alignment at tig00000887_pilon:130501..131455+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGAAAGCCGACGCTCAAGATCGCGATGACCGCGTCCATTCCCCGTC
TCAAAACGATGGTCAACCACTTCCGTCGCGAAGAGTGTCAGATCAATTAG
CCGCCAAACGTCGAGAAAAGCCACCCATGCGGTACACTGAAGATTTTCAA
ACTCCAGAGACCGTCACGATGCGCACAATCGGTGTCGTTCGATCTCCGTA
TAAGGAGCGATTTGGAACCCCCAGACAACCCATTGTGACCCAGAACACTC
TTGGCAACGAAATGCAGCCTGCCACAATCGAGCTCTTCAAGAACTGCAGG
TATGAACTCGCGCTTCGCGGTCTTGCGCAGTTCGAGTACTGCTGGGTTGT
GTCATTCTTCCATCTCAATCAAGGGTTTAACCCTCTTGTAACTCCTCCAC
GAGGTCCAAGACAGAAACAAGGCGTTTTCGCAACCCGTTCCCCCCATCGA
CCGAACTCAATAGGACTATCTTGTATTCGCATCACATCAGTTGATGAGAA
GGAAGGCTTGGTCCACCTCTTGGGTGTTGATCTGCTAGATGGTACCCCAG
TTCTGGATATAAAGCCTTACGTTCCGTACTGCGATAGCTTTCCAAACGCC
AAATCTGGCTGGTTGGACAAATTAAGTGAGGATATGAAAGCTCCAGATTC
TTTGGGGTATCACCCGCCACCTGCCCACCTTATGCAAGGCTCTTCCACAA
AGGCATCCGAAGCTCAAGAAGAGTACGAGAAACGTGAGGTCGAATCAAAT
GCAAATACGAGTGGCTTGGACACGAACAAGGAATAG
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protein sequence of Ggra9934.t1

>Ggra9934.t1 ID=Ggra9934.t1|Name=Ggra9934.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=262bp
MQKADAQDRDDRVHSPSQNDGQPLPSRRVSDQLAAKRREKPPMRYTEDFQ
TPETVTMRTIGVVRSPYKERFGTPRQPIVTQNTLGNEMQPATIELFKNCR
YELALRGLAQFEYCWVVSFFHLNQGFNPLVTPPRGPRQKQGVFATRSPHR
PNSIGLSCIRITSVDEKEGLVHLLGVDLLDGTPVLDIKPYVPYCDSFPNA
KSGWLDKLSEDMKAPDSLGYHPPPAHLMQGSSTKASEAQEEYEKREVESN
ANTSGLDTNKE*
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mRNA from alignment at tig00000887_pilon:130501..131455+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9934.t1 ID=Ggra9934.t1|Name=Ggra9934.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=955bp|location=Sequence derived from alignment at tig00000887_pilon:130501..131455+ (Gracilaria gracilis GNS1m male)
ATGCAGAAAGCCGACGCTCAAGATCGCGATGACCGCGTCCATTCCCCGTC
TCAAAACGATGGTCAACCACTTCCGTCGCGAAGAGTGTCAGATCAATTAG
CCGCCAAACGTCGAGAAAAGCCACCCATGCGGTACACTGAAGATTTTCAA
ACTCCAGAGACCGTCACGATGCGCACAATCGGTGTCGTTCGATCTCCGTA
TAAGGTTGGTTGCTTACAAAAGAAACGAAATGTAGCTACATCTGATCAGC
GCTAACAAAACTTTGCCCATACAACTCCTGCACTATGCGAACAAATCAAA
GGAGCGATTTGGAACCCCCAGACAACCCATTGTGACCCAGAACACTCTTG
GCAACGAAATGCAGCCTGCCACAATCGAGCTCTTCAAGAACTGCAGGTAT
GAACTCGCGCTTCGCGGTCTTGCGCAGTTCGAGTACTGCTGGGTTGTGTC
ATTCTTCCATCTCAATCAAGGGTTTAACCCTCTTGTAACTCCTCCACGAG
GTCCAAGACAGAAACAAGGCGTTTTCGCAACCCGTTCCCCCCATCGACCG
AACTCAATAGGACTATCTTGTATTCGCATCACATCAGTTGATGAGAAGGA
AGGCTTGGTCCACCTCTTGGGTGTTGATCTGCTAGATGGTACCCCAGTTC
TGGATATAAAGCCTTGTAAGTTCACAGCGTATTGTCCACGAAATCTTTAC
GTTATATCCAACTAACAAAACCACCGAACCTGCAAAGACGTTCCGTACTG
CGATAGCTTTCCAAACGCCAAATCTGGCTGGTTGGACAAATTAAGTGAGG
ATATGAAAGCTCCAGATTCTTTGGGGTATCACCCGCCACCTGCCCACCTT
ATGCAAGGCTCTTCCACAAAGGCATCCGAAGCTCAAGAAGAGTACGAGAA
ACGTGAGGTCGAATCAAATGCAAATACGAGTGGCTTGGACACGAACAAGG
AATAG
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Coding sequence (CDS) from alignment at tig00000887_pilon:130501..131455+

>Ggra9934.t1 ID=Ggra9934.t1|Name=Ggra9934.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=786bp|location=Sequence derived from alignment at tig00000887_pilon:130501..131455+ (Gracilaria gracilis GNS1m male)
ATGCAGAAAGCCGACGCTCAAGATCGCGATGACCGCGTCCATTCCCCGTC
TCAAAACGATGGTCAACCACTTCCGTCGCGAAGAGTGTCAGATCAATTAG
CCGCCAAACGTCGAGAAAAGCCACCCATGCGGTACACTGAAGATTTTCAA
ACTCCAGAGACCGTCACGATGCGCACAATCGGTGTCGTTCGATCTCCGTA
TAAGGAGCGATTTGGAACCCCCAGACAACCCATTGTGACCCAGAACACTC
TTGGCAACGAAATGCAGCCTGCCACAATCGAGCTCTTCAAGAACTGCAGG
TATGAACTCGCGCTTCGCGGTCTTGCGCAGTTCGAGTACTGCTGGGTTGT
GTCATTCTTCCATCTCAATCAAGGGTTTAACCCTCTTGTAACTCCTCCAC
GAGGTCCAAGACAGAAACAAGGCGTTTTCGCAACCCGTTCCCCCCATCGA
CCGAACTCAATAGGACTATCTTGTATTCGCATCACATCAGTTGATGAGAA
GGAAGGCTTGGTCCACCTCTTGGGTGTTGATCTGCTAGATGGTACCCCAG
TTCTGGATATAAAGCCTTACGTTCCGTACTGCGATAGCTTTCCAAACGCC
AAATCTGGCTGGTTGGACAAATTAAGTGAGGATATGAAAGCTCCAGATTC
TTTGGGGTATCACCCGCCACCTGCCCACCTTATGCAAGGCTCTTCCACAA
AGGCATCCGAAGCTCAAGAAGAGTACGAGAAACGTGAGGTCGAATCAAAT
GCAAATACGAGTGGCTTGGACACGAACAAGGAATAG
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