Ggra9933.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9933.t1
Unique NameGgra9933.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length170
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000887_piloncontigtig00000887_pilon:129062..129571 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9933Ggra9933Gracilaria gracilis GNS1m malegenetig00000887_pilon 129062..129571 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9933.t1.start1Ggra9933.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000887_pilon 129062..129064 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9933.t1.CDS1Ggra9933.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000887_pilon 129062..129571 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9933.t1.exon1Ggra9933.t1.exon1Gracilaria gracilis GNS1m maleexontig00000887_pilon 129062..129571 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9933.t1.stop1Ggra9933.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000887_pilon 129569..129571 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9933.t1Ggra9933.t1Gracilaria gracilis GNS1m malepolypeptidetig00000887_pilon 129062..129571 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9933.t1 ID=Ggra9933.t1|Name=Ggra9933.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=170bp
MTTAAARPSALQMALLWENRLSKDVGPSLQNLIPLSPTPLTPPPSPHSDD
HFFYPSTPRRPRRKVSASKPPVAPILAPNPITANVQEVTLPHRMLDASSP
VSSFHSSAPSSPPVLNPPRRITPPRHGFLAQLEQLQRDLAHCHQRMDTLE
TRFRVISAGMRNVRVYNIR*
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spliced messenger RNA

>Ggra9933.t1 ID=Ggra9933.t1|Name=Ggra9933.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=510bp|location=Sequence derived from alignment at tig00000887_pilon:129062..129571+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCACCGCCGCCGCCAGACCGTCCGCGCTGCAGATGGCCTTGCTGTG
GGAAAACCGTCTTTCTAAAGACGTCGGTCCCTCCCTCCAAAATCTCATAC
CGCTGTCGCCCACACCGCTCACTCCGCCTCCATCACCCCACTCTGACGAC
CACTTCTTCTACCCTTCAACGCCTCGTCGGCCCCGCAGAAAGGTTTCCGC
GAGCAAACCGCCCGTCGCCCCAATCCTTGCCCCAAATCCCATCACCGCCA
ATGTGCAGGAGGTCACACTACCACACCGCATGCTCGACGCCTCCTCGCCC
GTGTCCAGCTTTCATAGTTCGGCTCCGTCTTCGCCGCCAGTACTCAATCC
CCCGCGCCGTATCACTCCACCTAGACATGGTTTCCTCGCTCAGCTTGAAC
AACTGCAGCGCGACTTGGCTCATTGTCATCAACGAATGGACACACTGGAA
ACACGTTTTCGAGTAATCTCGGCTGGCATGCGAAACGTGCGAGTTTATAA
TATCCGTTGA
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protein sequence of Ggra9933.t1

>Ggra9933.t1 ID=Ggra9933.t1|Name=Ggra9933.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=170bp
MTTAAARPSALQMALLWENRLSKDVGPSLQNLIPLSPTPLTPPPSPHSDD
HFFYPSTPRRPRRKVSASKPPVAPILAPNPITANVQEVTLPHRMLDASSP
VSSFHSSAPSSPPVLNPPRRITPPRHGFLAQLEQLQRDLAHCHQRMDTLE
TRFRVISAGMRNVRVYNIR*
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mRNA from alignment at tig00000887_pilon:129062..129571+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9933.t1 ID=Ggra9933.t1|Name=Ggra9933.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=510bp|location=Sequence derived from alignment at tig00000887_pilon:129062..129571+ (Gracilaria gracilis GNS1m male)
ATGACCACCGCCGCCGCCAGACCGTCCGCGCTGCAGATGGCCTTGCTGTG
GGAAAACCGTCTTTCTAAAGACGTCGGTCCCTCCCTCCAAAATCTCATAC
CGCTGTCGCCCACACCGCTCACTCCGCCTCCATCACCCCACTCTGACGAC
CACTTCTTCTACCCTTCAACGCCTCGTCGGCCCCGCAGAAAGGTTTCCGC
GAGCAAACCGCCCGTCGCCCCAATCCTTGCCCCAAATCCCATCACCGCCA
ATGTGCAGGAGGTCACACTACCACACCGCATGCTCGACGCCTCCTCGCCC
GTGTCCAGCTTTCATAGTTCGGCTCCGTCTTCGCCGCCAGTACTCAATCC
CCCGCGCCGTATCACTCCACCTAGACATGGTTTCCTCGCTCAGCTTGAAC
AACTGCAGCGCGACTTGGCTCATTGTCATCAACGAATGGACACACTGGAA
ACACGTTTTCGAGTAATCTCGGCTGGCATGCGAAACGTGCGAGTTTATAA
TATCCGTTGA
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Coding sequence (CDS) from alignment at tig00000887_pilon:129062..129571+

>Ggra9933.t1 ID=Ggra9933.t1|Name=Ggra9933.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=510bp|location=Sequence derived from alignment at tig00000887_pilon:129062..129571+ (Gracilaria gracilis GNS1m male)
ATGACCACCGCCGCCGCCAGACCGTCCGCGCTGCAGATGGCCTTGCTGTG
GGAAAACCGTCTTTCTAAAGACGTCGGTCCCTCCCTCCAAAATCTCATAC
CGCTGTCGCCCACACCGCTCACTCCGCCTCCATCACCCCACTCTGACGAC
CACTTCTTCTACCCTTCAACGCCTCGTCGGCCCCGCAGAAAGGTTTCCGC
GAGCAAACCGCCCGTCGCCCCAATCCTTGCCCCAAATCCCATCACCGCCA
ATGTGCAGGAGGTCACACTACCACACCGCATGCTCGACGCCTCCTCGCCC
GTGTCCAGCTTTCATAGTTCGGCTCCGTCTTCGCCGCCAGTACTCAATCC
CCCGCGCCGTATCACTCCACCTAGACATGGTTTCCTCGCTCAGCTTGAAC
AACTGCAGCGCGACTTGGCTCATTGTCATCAACGAATGGACACACTGGAA
ACACGTTTTCGAGTAATCTCGGCTGGCATGCGAAACGTGCGAGTTTATAA
TATCCGTTGA
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