Ggra9931.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra9931.t1
Unique Name	Ggra9931.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	591

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000887_pilon	contig	tig00000887_pilon:120978..122750 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005706222.1
PFAMs	ATP_bind_1,MMR_HSR1
Max annot lvl	2759\|Eukaryota
Evalue	1.1e-113
EggNOG OGs	COG1161@1\|root,KOG1249@2759\|Eukaryota
Description	GTP binding
COG category	V

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra9931	Ggra9931	Gracilaria gracilis GNS1m male	gene	tig00000887_pilon 120978..122750 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9931.t1.stop1	Ggra9931.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000887_pilon 120978..120980 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9931.t1.CDS1	Ggra9931.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000887_pilon 120978..122750 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9931.t1.exon1	Ggra9931.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000887_pilon 120978..122750 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9931.t1.start1	Ggra9931.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000887_pilon 122748..122750 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9931.t1	Ggra9931.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000887_pilon 120978..122750 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000887_pilon:120978..122750-
coding sequence from alignment at tig00000887_pilon:120978..122750-

mRNA sequence

>Ggra9931.t1 ID=Ggra9931.t1|Name=Ggra9931.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=591bp
MNLTSGLLFQNVACFRSCFQPSFIRSISSSHCVRKLSTRRRVLVSASIHS
SNEDAFQSYENEKNVPKPPSNDVFSAFDNALDRIEQDIDSKSRSNTLKRK
VQHGDHDEHLRRLESLVSLPSELFVEATKDTCSGCGTVLQAESPDAPGFL
PPEVLAKQRLHAGFPATKVESNAEEEEILVEDVPKRVVCQRCYRLTHYNA
IEPNLRVPPSVSVESENLPSELSPGKFRRNLEALKKINSVIIYLVDIFDF
HGTFIPALRDIVGTKNPILLAANKVDLLPTDMKPNRVEAWIKQECEELGL
SDIARIHLISSTKGQNVRILLADAVRLAKKRRADIYVIGAANVGKSTFIN
QLMKLQNRKKTKVPGKKRGSVSSAREALTTSVVPGTTLDVIKIPLGSSTN
LYDTPGLMMPHQLTNYLDSKDLRAVLPSKAVERITFRLGEGKALYIGAMA
RIEVVSGKPFFFTSFFSPEVKVHPGKAEGALEFTEKHAGEFLKPPSSLDA
YEGFGEWTSKSFTAKGEGWRRSCADIVFSGLGWVALTGVGDINVRICVPR
GVGVFTRESLMPFETQKGVSSYTGATAVNKKQLRKKRRNY*

spliced messenger RNA

>Ggra9931.t1 ID=Ggra9931.t1|Name=Ggra9931.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1773bp|location=Sequence derived from alignment at tig00000887_pilon:120978..122750- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATTTAACATCAGGATTATTATTCCAGAACGTCGCCTGTTTTCGGAG
TTGTTTTCAGCCGTCTTTCATCCGCTCCATTTCCTCATCTCACTGCGTGC
GAAAACTCTCTACCAGACGACGTGTACTTGTTTCCGCTTCTATACATTCT
TCAAATGAGGATGCTTTTCAAAGTTATGAGAACGAAAAGAACGTCCCCAA
ACCACCGTCAAACGACGTATTTTCCGCCTTTGACAATGCTCTGGACCGCA
TAGAACAGGACATAGATTCAAAGTCGAGGTCAAATACGTTGAAACGCAAG
GTACAACATGGGGATCACGATGAACACCTCCGTCGTCTCGAATCTTTGGT
CTCTCTGCCGTCAGAGCTCTTTGTTGAAGCTACCAAGGACACTTGCTCAG
GGTGTGGAACAGTTCTGCAGGCCGAATCTCCAGATGCTCCAGGGTTTCTA
CCGCCGGAGGTTTTAGCCAAACAGCGACTACACGCAGGATTCCCTGCCAC
TAAGGTCGAGTCAAATGCTGAAGAGGAGGAAATTTTGGTAGAAGACGTAC
CAAAACGAGTAGTTTGTCAGAGATGTTATCGACTCACTCACTATAATGCC
ATTGAGCCCAACCTACGGGTGCCACCTTCTGTTTCTGTAGAAAGCGAGAA
TCTTCCTTCTGAGCTCTCACCAGGGAAATTTCGCCGCAACTTGGAAGCCT
TGAAGAAGATAAATTCTGTCATCATATATCTCGTTGACATTTTCGACTTT
CACGGCACCTTCATTCCTGCACTCCGAGATATAGTAGGGACTAAGAACCC
GATACTATTGGCAGCGAACAAGGTGGATCTACTTCCCACGGACATGAAAC
CAAACCGTGTTGAAGCATGGATCAAACAAGAATGTGAAGAGCTAGGTTTA
TCTGATATCGCCCGTATACATCTGATTTCTTCTACGAAGGGGCAGAACGT
CAGAATATTGCTGGCAGATGCGGTAAGACTTGCGAAGAAGCGTCGTGCCG
ACATCTATGTTATCGGGGCAGCGAATGTTGGAAAGTCAACGTTTATTAAT
CAGCTCATGAAACTACAGAATCGCAAGAAGACAAAGGTACCTGGCAAGAA
ACGCGGCAGTGTTTCATCAGCTCGAGAAGCCCTGACAACTAGTGTGGTTC
CCGGGACGACACTGGATGTTATCAAGATTCCGCTCGGGTCATCCACAAAC
TTATATGACACTCCAGGTTTGATGATGCCCCACCAACTGACCAATTATTT
GGATTCCAAGGATCTCCGGGCAGTACTTCCTTCCAAGGCTGTTGAACGCA
TTACCTTCCGGCTTGGGGAAGGGAAGGCATTATACATTGGCGCGATGGCA
CGAATCGAAGTAGTGTCGGGAAAGCCGTTCTTCTTCACATCATTTTTTTC
ACCAGAGGTCAAGGTTCATCCTGGGAAGGCCGAAGGCGCGCTGGAGTTCA
CTGAGAAACATGCTGGAGAGTTCCTGAAACCGCCATCATCATTAGACGCA
TATGAAGGCTTCGGGGAATGGACGTCAAAGTCTTTCACGGCCAAAGGTGA
AGGATGGAGGAGGTCGTGCGCAGACATAGTGTTTTCTGGATTAGGGTGGG
TGGCTTTGACAGGTGTTGGGGACATAAACGTTCGGATATGTGTCCCACGA
GGAGTTGGGGTGTTTACAAGAGAATCTCTGATGCCTTTTGAAACGCAAAA
GGGAGTAAGCTCGTATACAGGGGCAACAGCAGTTAACAAGAAGCAGCTTC
GGAAAAAGCGAAGAAATTACTAA

protein sequence of Ggra9931.t1

>Ggra9931.t1 ID=Ggra9931.t1|Name=Ggra9931.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=591bp
MNLTSGLLFQNVACFRSCFQPSFIRSISSSHCVRKLSTRRRVLVSASIHS
SNEDAFQSYENEKNVPKPPSNDVFSAFDNALDRIEQDIDSKSRSNTLKRK
VQHGDHDEHLRRLESLVSLPSELFVEATKDTCSGCGTVLQAESPDAPGFL
PPEVLAKQRLHAGFPATKVESNAEEEEILVEDVPKRVVCQRCYRLTHYNA
IEPNLRVPPSVSVESENLPSELSPGKFRRNLEALKKINSVIIYLVDIFDF
HGTFIPALRDIVGTKNPILLAANKVDLLPTDMKPNRVEAWIKQECEELGL
SDIARIHLISSTKGQNVRILLADAVRLAKKRRADIYVIGAANVGKSTFIN
QLMKLQNRKKTKVPGKKRGSVSSAREALTTSVVPGTTLDVIKIPLGSSTN
LYDTPGLMMPHQLTNYLDSKDLRAVLPSKAVERITFRLGEGKALYIGAMA
RIEVVSGKPFFFTSFFSPEVKVHPGKAEGALEFTEKHAGEFLKPPSSLDA
YEGFGEWTSKSFTAKGEGWRRSCADIVFSGLGWVALTGVGDINVRICVPR
GVGVFTRESLMPFETQKGVSSYTGATAVNKKQLRKKRRNY*

mRNA from alignment at tig00000887_pilon:120978..122750-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra9931.t1 ID=Ggra9931.t1|Name=Ggra9931.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1773bp|location=Sequence derived from alignment at tig00000887_pilon:120978..122750- (Gracilaria gracilis GNS1m male)
ATGAATTTAACATCAGGATTATTATTCCAGAACGTCGCCTGTTTTCGGAG
TTGTTTTCAGCCGTCTTTCATCCGCTCCATTTCCTCATCTCACTGCGTGC
GAAAACTCTCTACCAGACGACGTGTACTTGTTTCCGCTTCTATACATTCT
TCAAATGAGGATGCTTTTCAAAGTTATGAGAACGAAAAGAACGTCCCCAA
ACCACCGTCAAACGACGTATTTTCCGCCTTTGACAATGCTCTGGACCGCA
TAGAACAGGACATAGATTCAAAGTCGAGGTCAAATACGTTGAAACGCAAG
GTACAACATGGGGATCACGATGAACACCTCCGTCGTCTCGAATCTTTGGT
CTCTCTGCCGTCAGAGCTCTTTGTTGAAGCTACCAAGGACACTTGCTCAG
GGTGTGGAACAGTTCTGCAGGCCGAATCTCCAGATGCTCCAGGGTTTCTA
CCGCCGGAGGTTTTAGCCAAACAGCGACTACACGCAGGATTCCCTGCCAC
TAAGGTCGAGTCAAATGCTGAAGAGGAGGAAATTTTGGTAGAAGACGTAC
CAAAACGAGTAGTTTGTCAGAGATGTTATCGACTCACTCACTATAATGCC
ATTGAGCCCAACCTACGGGTGCCACCTTCTGTTTCTGTAGAAAGCGAGAA
TCTTCCTTCTGAGCTCTCACCAGGGAAATTTCGCCGCAACTTGGAAGCCT
TGAAGAAGATAAATTCTGTCATCATATATCTCGTTGACATTTTCGACTTT
CACGGCACCTTCATTCCTGCACTCCGAGATATAGTAGGGACTAAGAACCC
GATACTATTGGCAGCGAACAAGGTGGATCTACTTCCCACGGACATGAAAC
CAAACCGTGTTGAAGCATGGATCAAACAAGAATGTGAAGAGCTAGGTTTA
TCTGATATCGCCCGTATACATCTGATTTCTTCTACGAAGGGGCAGAACGT
CAGAATATTGCTGGCAGATGCGGTAAGACTTGCGAAGAAGCGTCGTGCCG
ACATCTATGTTATCGGGGCAGCGAATGTTGGAAAGTCAACGTTTATTAAT
CAGCTCATGAAACTACAGAATCGCAAGAAGACAAAGGTACCTGGCAAGAA
ACGCGGCAGTGTTTCATCAGCTCGAGAAGCCCTGACAACTAGTGTGGTTC
CCGGGACGACACTGGATGTTATCAAGATTCCGCTCGGGTCATCCACAAAC
TTATATGACACTCCAGGTTTGATGATGCCCCACCAACTGACCAATTATTT
GGATTCCAAGGATCTCCGGGCAGTACTTCCTTCCAAGGCTGTTGAACGCA
TTACCTTCCGGCTTGGGGAAGGGAAGGCATTATACATTGGCGCGATGGCA
CGAATCGAAGTAGTGTCGGGAAAGCCGTTCTTCTTCACATCATTTTTTTC
ACCAGAGGTCAAGGTTCATCCTGGGAAGGCCGAAGGCGCGCTGGAGTTCA
CTGAGAAACATGCTGGAGAGTTCCTGAAACCGCCATCATCATTAGACGCA
TATGAAGGCTTCGGGGAATGGACGTCAAAGTCTTTCACGGCCAAAGGTGA
AGGATGGAGGAGGTCGTGCGCAGACATAGTGTTTTCTGGATTAGGGTGGG
TGGCTTTGACAGGTGTTGGGGACATAAACGTTCGGATATGTGTCCCACGA
GGAGTTGGGGTGTTTACAAGAGAATCTCTGATGCCTTTTGAAACGCAAAA
GGGAGTAAGCTCGTATACAGGGGCAACAGCAGTTAACAAGAAGCAGCTTC
GGAAAAAGCGAAGAAATTACTAA

Coding sequence (CDS) from alignment at tig00000887_pilon:120978..122750-

>Ggra9931.t1 ID=Ggra9931.t1|Name=Ggra9931.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1773bp|location=Sequence derived from alignment at tig00000887_pilon:120978..122750- (Gracilaria gracilis GNS1m male)
ATGAATTTAACATCAGGATTATTATTCCAGAACGTCGCCTGTTTTCGGAG
TTGTTTTCAGCCGTCTTTCATCCGCTCCATTTCCTCATCTCACTGCGTGC
GAAAACTCTCTACCAGACGACGTGTACTTGTTTCCGCTTCTATACATTCT
TCAAATGAGGATGCTTTTCAAAGTTATGAGAACGAAAAGAACGTCCCCAA
ACCACCGTCAAACGACGTATTTTCCGCCTTTGACAATGCTCTGGACCGCA
TAGAACAGGACATAGATTCAAAGTCGAGGTCAAATACGTTGAAACGCAAG
GTACAACATGGGGATCACGATGAACACCTCCGTCGTCTCGAATCTTTGGT
CTCTCTGCCGTCAGAGCTCTTTGTTGAAGCTACCAAGGACACTTGCTCAG
GGTGTGGAACAGTTCTGCAGGCCGAATCTCCAGATGCTCCAGGGTTTCTA
CCGCCGGAGGTTTTAGCCAAACAGCGACTACACGCAGGATTCCCTGCCAC
TAAGGTCGAGTCAAATGCTGAAGAGGAGGAAATTTTGGTAGAAGACGTAC
CAAAACGAGTAGTTTGTCAGAGATGTTATCGACTCACTCACTATAATGCC
ATTGAGCCCAACCTACGGGTGCCACCTTCTGTTTCTGTAGAAAGCGAGAA
TCTTCCTTCTGAGCTCTCACCAGGGAAATTTCGCCGCAACTTGGAAGCCT
TGAAGAAGATAAATTCTGTCATCATATATCTCGTTGACATTTTCGACTTT
CACGGCACCTTCATTCCTGCACTCCGAGATATAGTAGGGACTAAGAACCC
GATACTATTGGCAGCGAACAAGGTGGATCTACTTCCCACGGACATGAAAC
CAAACCGTGTTGAAGCATGGATCAAACAAGAATGTGAAGAGCTAGGTTTA
TCTGATATCGCCCGTATACATCTGATTTCTTCTACGAAGGGGCAGAACGT
CAGAATATTGCTGGCAGATGCGGTAAGACTTGCGAAGAAGCGTCGTGCCG
ACATCTATGTTATCGGGGCAGCGAATGTTGGAAAGTCAACGTTTATTAAT
CAGCTCATGAAACTACAGAATCGCAAGAAGACAAAGGTACCTGGCAAGAA
ACGCGGCAGTGTTTCATCAGCTCGAGAAGCCCTGACAACTAGTGTGGTTC
CCGGGACGACACTGGATGTTATCAAGATTCCGCTCGGGTCATCCACAAAC
TTATATGACACTCCAGGTTTGATGATGCCCCACCAACTGACCAATTATTT
GGATTCCAAGGATCTCCGGGCAGTACTTCCTTCCAAGGCTGTTGAACGCA
TTACCTTCCGGCTTGGGGAAGGGAAGGCATTATACATTGGCGCGATGGCA
CGAATCGAAGTAGTGTCGGGAAAGCCGTTCTTCTTCACATCATTTTTTTC
ACCAGAGGTCAAGGTTCATCCTGGGAAGGCCGAAGGCGCGCTGGAGTTCA
CTGAGAAACATGCTGGAGAGTTCCTGAAACCGCCATCATCATTAGACGCA
TATGAAGGCTTCGGGGAATGGACGTCAAAGTCTTTCACGGCCAAAGGTGA
AGGATGGAGGAGGTCGTGCGCAGACATAGTGTTTTCTGGATTAGGGTGGG
TGGCTTTGACAGGTGTTGGGGACATAAACGTTCGGATATGTGTCCCACGA
GGAGTTGGGGTGTTTACAAGAGAATCTCTGATGCCTTTTGAAACGCAAAA
GGGAGTAAGCTCGTATACAGGGGCAACAGCAGTTAACAAGAAGCAGCTTC
GGAAAAAGCGAAGAAATTACTAA